genome.fa.s6.2.7.7.80.10.50.1000.284.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  284  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96896229--96896682	227	2.0	227	98	0	872	27	17	21	33	1.95
96897631--96897656	7	3.7	7	100	0	52	61	0	15	23	1.33
96910615--96910652	7	5.4	7	100	0	76	13	15	13	57	1.65
96913779--96914225	50	8.9	50	76	3	387	26	18	25	29	1.98
96913830--96914061	101	2.3	100	84	2	286	27	18	24	29	1.98
96913779--96914219	151	2.9	151	89	1	634	26	18	24	29	1.98
96913981--96914170	101	1.9	101	85	0	263	27	21	24	27	1.99
96914423--96914452	16	1.9	15	93	6	51	43	0	23	33	1.54
96920711--96921138	50	8.5	50	75	6	319	24	17	26	32	1.97
96920707--96921146	151	2.9	151	86	2	591	24	17	25	31	1.97
96920909--96921089	101	1.8	100	91	1	299	25	19	24	29	1.99
96926540--96926711	49	3.5	48	80	7	188	29	22	26	22	1.99
96929057--96929229	45	3.9	44	79	8	170	19	18	13	47	1.82
96933906--96934038	55	2.4	55	86	3	180	21	20	30	27	1.98
96933910--96934057	55	2.7	55	82	4	156	22	20	32	24	1.98
96938971--96939119	29	5.2	29	87	0	210	28	29	14	26	1.95
96954180--96954239	30	2.0	30	96	0	111	18	36	15	30	1.91
96961928--96962103	46	3.8	46	76	12	198	22	20	26	30	1.98
96961925--96962095	93	1.8	93	93	0	297	22	21	26	29	1.99
96966367--96966542	46	3.8	45	81	10	212	21	21	29	28	1.98
96966363--96966534	93	1.8	93	94	0	308	20	21	30	27	1.98
96969478--96969546	15	4.6	15	83	0	84	11	17	13	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96969469--96969556	30	3.0	30	81	8	99	10	17	15	56	1.66
96972436--96972560	22	5.4	22	64	29	64	36	12	26	24	1.90
96972530--96972605	22	3.3	22	68	22	66	36	10	28	23	1.88
96972223--96972608	47	8.2	47	90	0	556	34	10	27	26	1.90
96972622--96972712	46	2.0	46	86	0	128	34	6	31	27	1.83
96974159--96974552	40	9.9	40	93	0	657	24	22	26	25	2.00
96974368--96974474	23	5.2	23	60	25	67	25	22	27	25	2.00
96974592--96974720	29	4.5	28	78	8	118	21	17	30	31	1.96
96974560--96974727	57	2.9	57	89	0	246	22	17	29	30	1.97
96974564--96974720	28	5.6	27	77	8	143	21	18	29	30	1.97
96976307--96976489	79	2.3	81	83	9	225	24	27	23	24	2.00
96976305--96976489	40	4.7	40	82	7	225	24	28	23	23	2.00
96984382--96984564	79	2.3	81	83	9	225	24	27	23	24	2.00
96984380--96984564	40	4.7	40	79	10	209	24	28	23	23	2.00
96989819--96989942	22	5.4	22	64	27	69	33	13	28	24	1.93
96989912--96990034	22	5.3	22	65	30	69	36	11	26	25	1.90
96989746--96990037	47	6.2	47	92	0	440	34	11	28	26	1.91
96989785--96990071	47	6.1	46	89	4	282	35	11	28	25	1.90
96989785--96990071	94	3.1	93	86	4	373	35	11	28	25	1.90
96989785--96990071	141	2.0	141	87	1	405	35	11	28	25	1.90
96990051--96990141	46	2.0	46	88	0	137	35	6	30	27	1.82
96993336--96993508	46	3.8	44	78	10	177	22	19	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96993329--96993500	93	1.8	93	89	0	272	22	19	29	28	1.98
96996667--96996735	34	2.0	34	97	0	129	33	14	21	30	1.93
97004167--97004214	21	2.2	22	77	3	53	45	2	8	43	1.45
97007710--97007742	17	1.9	17	93	0	57	21	0	3	75	0.93
97010166--97010266	30	3.4	30	78	0	112	16	17	25	39	1.91
97011649--97011747	40	2.5	39	80	6	110	26	19	19	35	1.95
97011801--97011911	40	2.8	37	78	16	109	28	21	20	28	1.98
97012191--97012223	17	1.9	17	100	0	66	45	0	0	54	0.99
97012237--97012367	21	6.1	21	66	12	61	23	0	28	47	1.57
97012298--97012367	7	9.9	7	72	9	52	21	0	31	47	1.51
97012298--97012362	15	4.5	15	77	7	64	21	0	33	44	1.53
97012237--97012367	14	9.2	14	68	14	54	23	0	28	47	1.57
97013467--97013575	52	2.1	52	91	0	173	24	14	41	19	1.89
97014501--97014568	34	2.0	34	94	0	118	19	22	8	50	1.75
97017736--97017803	22	3.0	21	75	16	57	57	1	1	39	1.17
97017733--97017793	21	2.8	21	76	14	61	60	1	1	36	1.16
97017800--97017911	43	2.6	43	85	0	152	22	12	29	35	1.91
97033915--97034034	25	4.8	25	94	0	204	27	23	23	25	2.00
97034239--97034400	27	6.0	27	90	0	234	25	20	18	34	1.96
97034403--97034759	27	13.2	27	79	7	262	31	8	20	40	1.82
97034427--97034739	81	3.9	81	80	5	348	30	8	20	40	1.83
97034452--97034759	54	5.7	54	77	5	311	30	8	20	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97038899--97038974	40	1.9	40	86	5	109	15	14	32	36	1.88
97041300--97041591	57	5.1	57	74	10	163	36	20	16	26	1.94
97041418--97041515	29	3.4	29	87	1	144	35	20	18	25	1.95
97041300--97041591	28	10.3	28	75	6	178	36	20	16	26	1.94
97042877--97043001	57	2.2	58	81	7	139	29	16	24	28	1.97
97051818--97051893	22	3.3	22	68	28	68	36	10	27	25	1.89
97051590--97051930	187	1.8	188	87	1	506	34	12	28	25	1.91
97051559--97051896	47	7.2	47	89	0	489	34	11	27	26	1.91
97051910--97052000	46	2.0	46	88	0	137	35	6	30	27	1.82
97051580--97051939	140	2.6	140	84	2	382	34	11	28	25	1.91
97053443--97053755	40	7.9	40	90	1	488	24	21	27	26	1.99
97053443--97053755	119	2.6	120	92	2	515	24	21	27	26	1.99
97053793--97053921	29	4.5	28	78	8	118	21	17	30	31	1.96
97053761--97053928	57	2.9	57	88	0	237	23	17	28	30	1.97
97053766--97053921	28	5.5	27	76	8	141	21	18	28	30	1.97
97057822--97057897	22	3.3	22	68	28	68	36	10	27	25	1.89
97057562--97057900	47	7.2	47	90	0	498	34	11	27	26	1.90
97057908--97058013	46	2.2	48	80	10	126	33	5	29	31	1.81
97067197--97067260	31	2.1	31	87	0	92	23	20	15	40	1.90
97067475--97067593	23	5.1	23	95	1	211	30	21	21	26	1.98
97067644--97067708	20	3.2	20	93	0	112	32	21	12	33	1.90
97067644--97067697	11	5.3	11	70	17	53	31	20	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97070185--97070228	19	2.4	18	85	7	54	40	9	0	50	1.34
97074077--97074115	18	2.2	19	90	9	64	69	5	15	10	1.34
97074535--97074568	17	1.9	18	88	5	52	41	0	23	35	1.55
97086732--97086756	13	1.9	13	100	0	50	32	4	24	40	1.73
97091785--97091905	28	4.4	28	67	6	86	35	19	16	28	1.94
97093593--97093653	29	2.1	30	82	14	74	47	13	6	32	1.68
97097282--97097390	45	2.5	45	85	8	136	29	29	21	20	1.98
97098665--97098700	18	2.0	18	100	0	72	38	16	5	38	1.72
97100426--97100483	30	1.9	31	82	3	73	15	31	5	48	1.67
97100683--97100754	36	2.0	36	94	0	126	18	18	31	31	1.94
97101259--97101338	27	3.0	27	84	0	97	25	15	17	42	1.88
97108425--97108455	15	2.0	16	93	6	55	77	0	12	9	0.99
97110536--97110583	25	1.9	25	83	8	62	41	2	6	50	1.39
97117349--97117381	6	5.5	6	96	0	57	15	3	0	81	0.80
97117349--97117388	18	2.2	18	86	0	53	17	5	0	77	0.94
97124370--97124579	47	4.5	47	96	0	366	33	7	30	29	1.84
97125994--97126384	40	9.8	40	90	0	586	24	21	28	26	1.99
97129906--97130162	47	5.5	47	95	0	424	32	7	30	28	1.85
97135218--97135320	34	3.1	33	77	14	95	25	18	23	33	1.97
97142073--97142176	42	2.5	41	82	4	109	30	25	18	25	1.98
97154766--97154902	56	2.4	56	93	0	229	33	24	15	27	1.95
97155070--97155112	21	2.0	21	90	0	68	25	27	9	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97156772--97156931	31	5.2	31	94	0	275	30	25	16	28	1.97
97157157--97157247	25	3.7	25	91	1	139	24	23	27	25	2.00
97158055--97158159	27	3.9	27	80	12	117	21	20	21	36	1.95
97158190--97158242	27	2.0	27	84	0	70	35	13	15	35	1.86
97158199--97158496	27	11.0	27	77	7	84	30	8	19	42	1.80
97158265--97158509	81	3.0	80	83	2	258	28	7	21	42	1.79
97158265--97158509	27	9.1	26	79	5	220	28	7	21	42	1.79
97158486--97158617	27	4.9	27	84	1	149	40	7	21	30	1.81
97158290--97158536	134	1.8	134	80	3	291	30	8	21	39	1.82
97158461--97158593	54	2.5	54	83	0	149	40	6	19	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345