Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  338  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112528775--112528810
17
2.1
18
89
5
56
55
2
16
25
1.55
112529488--112529527
20
2.0
20
95
0
71
67
2
10
20
1.31
112529875--112529929
28
2.0
28
85
3
76
54
7
12
25
1.63
112530132--112530192
17
3.5
17
77
16
70
39
9
16
34
1.82
112530132--112530185
17
2.9
19
89
10
94
38
11
14
35
1.82
112530147--112530194
19
2.5
19
75
25
55
41
8
16
33
1.78
112530475--112530509
17
2.0
18
88
5
54
28
0
0
71
0.86
112536491--112536517
14
1.9
14
100
0
54
22
3
0
74
0.98
112539404--112539433
15
2.0
15
93
0
51
36
0
16
46
1.47
112549717--112549745
14
2.1
14
100
0
58
37
20
20
20
1.94
112549837--112549898
24
2.6
24
89
0
88
38
4
25
30
1.77
112549978--112550038
30
2.0
30
100
0
122
40
6
16
36
1.74
112553117--112553150
9
3.8
9
92
0
59
23
2
0
73
0.97
112553121--112553156
18
2.0
18
88
0
54
25
5
2
66
1.27
112556131--112556173
13
3.4
12
78
9
50
81
4
11
2
0.93
112556152--112556196
23
1.9
23
86
4
63
73
4
17
4
1.17
112556456--112556510
20
2.8
20
82
0
83
3
0
45
50
1.19
112557196--112557855
87
7.6
85
73
13
435
35
17
16
30
1.92
112557412--112557444
14
2.4
14
94
0
57
63
6
12
18
1.48
112557196--112557609
180
2.3
179
80
8
461
35
17
17
28
1.93
112557522--112557663
76
1.9
74
86
2
203
30
20
16
31
1.95
112557627--112557833
83
2.4
84
81
12
237
34
16
15
33
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112557874--112557984
54
2.0
55
82
5
136
39
18
15
26
1.90
112557964--112557997
13
2.5
13
90
4
50
58
8
11
20
1.59
112557842--112558583
140
5.4
140
92
5
1236
36
20
17
25
1.94
112563355--112563390
12
3.0
12
95
0
63
41
5
25
27
1.77
112570756--112570808
26
2.0
26
100
0
106
28
15
18
37
1.91
112570944--112570994
26
2.0
26
84
3
68
54
7
7
29
1.57
112577247--112577287
19
2.1
19
86
4
55
68
0
2
29
1.03
112579145--112579183
21
1.9
20
85
15
53
38
0
0
61
0.96
112579488--112579520
17
2.0
17
88
5
50
48
0
0
51
1.00
112581028--112581073
23
2.0
24
86
4
67
73
2
8
15
1.16
112586075--112586184
6
18.5
6
70
9
64
33
5
3
57
1.39
112586360--112586407
9
5.1
10
80
19
59
35
0
2
62
1.07
112586360--112586421
18
3.5
18
83
14
67
32
1
3
62
1.20
112586568--112586606
20
2.0
20
85
10
53
33
7
0
58
1.26
112586754--112586806
27
2.0
27
84
0
70
26
7
5
60
1.46
112586918--112586964
3
16.3
3
86
8
71
31
2
0
65
1.04
112588872--112589048
47
3.6
47
71
15
160
38
14
22
25
1.91
112588872--112589078
101
2.0
102
91
0
335
38
14
22
25
1.91
112588872--112589117
101
2.4
100
85
5
273
36
15
22
25
1.93
112589029--112589164
55
2.5
55
78
7
152
35
17
22
24
1.95
112598439--112598532
23
4.1
23
85
0
134
22
25
4
47
1.69
112602941--112603034
23
4.1
23
85
0
134
22
25
4
47
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112603561--112603986
232
1.8
228
83
7
563
41
16
9
32
1.80
112606753--112606791
15
2.7
15
88
7
55
61
2
25
10
1.41
112606733--112606780
24
2.0
25
83
4
62
66
0
20
12
1.24
112606812--112606848
20
2.0
20
89
10
60
72
2
24
0
0.97
112611683--112611769
21
4.0
23
77
10
83
37
24
21
16
1.93
112613218--112613253
15
2.3
17
81
18
51
0
30
0
69
0.89
112618578--112618629
19
2.8
18
77
5
59
51
9
0
38
1.35
112628232--112628303
16
4.5
16
86
5
101
38
6
26
27
1.82
112628493--112628525
17
2.0
16
94
5
57
66
0
0
33
0.92
112643937--112643985
25
2.0
25
84
8
64
46
4
0
48
1.20
112653248--112653298
26
2.0
26
85
7
70
47
3
1
47
1.32
112653764--112653792
15
1.9
15
100
0
58
75
0
0
24
0.80
112657851--112657890
14
2.9
14
92
0
62
35
7
15
42
1.75
112657853--112657909
14
4.0
14
84
8
53
35
8
15
40
1.79
112659522--112659556
16
2.2
16
90
10
54
40
0
5
54
1.24
112662745--112662770
6
4.3
6
100
0
52
19
0
0
80
0.71
112662778--112662810
2
16.5
2
100
0
66
51
0
48
0
1.00
112666156--112666195
17
2.5
17
77
22
50
47
0
0
52
1.00
112666940--112666973
17
2.0
17
88
11
52
67
0
0
32
0.91
112668609--112668633
9
2.8
9
100
0
50
80
0
0
20
0.72
112688551--112688625
14
5.8
13
71
25
70
64
2
0
33
1.08
112688551--112688614
29
2.2
29
80
5
76
64
3
0
32
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112693865--112693908
19
2.2
21
84
8
56
27
2
2
68
1.14
112695561--112695607
23
2.1
22
88
4
67
23
23
4
48
1.68
112695895--112695943
23
2.1
23
82
14
57
32
0
2
65
1.04
112696841--112696933
39
2.5
37
80
7
98
27
29
22
20
1.98
112698023--112698056
17
2.1
16
88
5
50
2
14
5
76
1.09
112698045--112698095
14
3.6
14
76
7
50
17
13
0
68
1.21
112698245--112698281
14
2.4
17
86
13
53
51
0
0
48
1.00
112704816--112704860
23
1.9
24
81
4
56
35
35
6
22
1.80
112714978--112715153
46
3.8
46
81
10
232
19
21
30
28
1.97
112714974--112715145
93
1.8
93
96
0
317
19
22
31
27
1.97
112716389--112716421
16
2.1
16
100
0
66
39
6
12
42
1.67
112717818--112717903
40
2.2
40
83
6
104
46
1
0
52
1.08
112726434--112726486
26
2.0
26
96
0
97
45
18
24
11
1.82
112728088--112728123
12
3.0
12
91
0
63
88
0
11
0
0.50
112743345--112743389
4
11.2
4
95
0
81
51
22
0
26
1.49
112745860--112745911
23
2.3
23
83
6
61
38
13
13
34
1.84
112745993--112746037
19
2.3
20
85
11
58
55
11
0
33
1.35
112747218--112747255
20
1.9
20
84
10
51
18
7
36
36
1.80
112747812--112747848
17
2.1
18
85
14
51
59
2
5
32
1.34
112760076--112760117
22
1.9
22
90
0
66
66
2
7
23
1.28
112760178--112760244
35
1.9
34
81
3
80
58
4
11
25
1.52
112779665--112779694
15
2.0
15
100
0
60
46
6
6
40
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112784068--112784104
11
3.4
11
88
0
56
72
0
2
24
0.97
112784091--112784200
9
12.6
9
74
19
83
67
0
0
30
1.03
112784089--112784173
17
5.0
17
72
15
77
69
0
1
29
0.96
112784081--112784173
36
2.7
34
78
14
102
68
0
2
29
1.01
112784068--112784146
11
8.3
10
74
20
55
69
0
2
27
1.01
112784091--112784173
43
1.9
43
82
4
105
68
0
1
30
0.97
112784091--112784200
26
4.2
26
80
8
109
67
0
0
30
1.03
112784607--112784656
18
2.7
19
81
6
57
70
4
0
26
1.05
112784844--112784889
21
2.1
22
88
4
67
36
6
4
52
1.47
112786484--112786833
175
2.0
175
85
2
479
38
10
18
32
1.85
112790271--112790322
20
2.5
20
81
3
59
59
0
7
32
1.26
112802699--112802745
21
2.2
22
92
3
78
21
19
38
21
1.94
112804899--112804942
18
2.3
20
88
7
65
52
0
2
45
1.13
112805086--112805141
21
2.6
21
83
8
60
33
0
3
62
1.12
112806032--112806089
20
2.9
20
85
10
66
70
5
0
24
1.07
112809394--112809553
80
2.0
80
90
0
248
37
11
30
20
1.89
112811617--112811965
117
3.0
116
90
2
529
29
18
9
42
1.81
112812302--112812352
19
2.9
18
85
8
52
23
1
1
72
1.05
112816338--112816464
62
2.0
62
100
0
254
29
9
23
37
1.86
112818442--112818494
26
2.0
26
100
0
106
54
15
15
15
1.71
112822298--112822340
18
2.3
18
88
8
59
27
16
2
53
1.55
112822772--112822819
23
2.1
23
84
7
62
31
0
2
66
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112826122--112826146
9
2.8
9
100
0
50
0
0
8
92
0.40
112829288--112829378
42
2.2
42
93
0
155
42
5
0
51
1.25
112839087--112839133
22
2.1
23
84
11
62
21
17
10
51
1.75
112847397--112847442
22
2.1
21
88
4
65
71
0
2
26
0.97
112848522--112848587
31
2.1
31
83
5
80
27
13
12
46
1.78
112848683--112848802
60
2.0
60
85
0
159
45
17
11
25
1.82
112849658--112849706
22
2.2
23
92
3
82
36
0
4
59
1.17
112863061--112863085
10
2.5
10
100
0
50
92
0
0
8
0.40
112863517--112863551
12
2.9
12
91
0
52
48
11
2
37
1.54
112865855--112865882
13
2.2
13
100
0
56
7
21
28
42
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345