genome.fa.s6.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  17  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5239274--5239585	92	3.4	92	87	2	432	35	16	17	30	1.92
5239920--5239945	12	2.2	12	100	0	52	46	46	0	7	1.31
5240422--5240459	15	2.3	18	86	13	55	34	15	0	50	1.45
5240626--5240686	15	3.8	16	80	10	72	22	8	1	67	1.27
5240634--5240717	30	2.8	31	81	15	104	23	10	2	63	1.39
5240780--5240832	25	2.2	23	90	6	79	32	7	0	60	1.25
5240944--5240978	15	2.2	16	90	5	54	25	8	0	65	1.21
5240943--5240979	16	2.3	17	81	13	51	24	8	0	67	1.17
5240996--5241257	125	2.1	127	83	3	323	35	12	15	37	1.85
5244580--5244619	20	2.0	21	90	5	64	62	5	10	22	1.46
5244753--5244777	3	8.3	3	100	0	50	32	0	0	68	0.90
5245919--5246057	60	2.3	60	83	6	165	26	25	20	27	1.99
5246050--5246105	19	2.9	19	81	2	58	32	23	17	26	1.97
5249654--5249700	23	2.0	25	83	8	62	25	8	6	59	1.50
5249806--5249836	14	2.2	14	94	0	53	32	0	0	67	0.91
5249795--5249834	18	2.2	19	86	13	57	30	0	2	67	1.04
5250150--5250223	27	2.8	25	84	6	85	29	5	5	59	1.42
5250195--5250245	22	2.3	22	83	6	59	27	3	1	66	1.20
5250230--5250279	26	1.9	26	87	0	73	32	6	2	60	1.32
5254312--5254387	38	2.0	38	100	0	152	34	5	23	36	1.78
5255399--5255437	10	3.9	10	80	12	53	69	2	7	20	1.26
5255455--5255487	13	2.8	12	90	9	50	51	12	0	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5257410--5257497	5	17.6	5	75	17	69	78	0	4	17	0.91
5257410--5257496	25	3.5	25	84	12	106	78	0	4	17	0.92
5257411--5257496	19	4.6	18	75	15	68	77	0	4	17	0.93
5257424--5257500	32	2.3	34	88	6	113	79	0	3	16	0.88
5262653--5262691	10	3.9	10	80	12	53	69	2	7	20	1.26
5266190--5266223	17	2.0	17	94	0	59	55	0	0	44	0.99
5269533--5269569	18	2.1	18	89	0	56	62	5	0	32	1.18
5270926--5271094	27	6.3	27	86	0	239	40	17	7	34	1.78
5271089--5271202	27	4.2	27	89	0	174	35	18	19	26	1.95
5270926--5271185	54	4.8	54	86	1	229	39	18	11	31	1.85
5270978--5271202	81	2.8	79	80	10	224	37	18	14	29	1.90
5271089--5271205	54	2.2	54	93	0	198	35	18	19	25	1.95
5271656--5271720	22	3.0	22	77	8	69	21	23	21	33	1.97
5271878--5271980	54	1.9	53	84	2	134	20	22	21	35	1.96
5271879--5271980	27	3.8	26	84	5	114	19	22	21	36	1.95
5272116--5272235	6	19.3	6	71	19	77	20	17	13	49	1.80
5272116--5272251	31	4.4	31	81	3	141	19	16	13	50	1.78
5274186--5274391	27	7.6	27	86	2	279	40	18	7	33	1.79
5274186--5274447	54	4.8	53	84	5	285	40	18	9	31	1.83
5274210--5274488	27	10.4	27	83	5	178	38	17	12	30	1.87
5274186--5274445	81	3.2	80	85	6	328	40	18	9	31	1.83
5274187--5274488	54	5.6	54	82	6	197	38	17	12	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5274238--5274490	81	3.1	80	82	5	224	38	18	13	29	1.89
5274238--5274490	27	9.4	27	86	3	203	38	18	13	29	1.89
5274919--5274980	22	2.8	22	82	7	72	24	22	19	33	1.97
5275139--5275240	27	3.8	27	83	5	107	19	22	21	36	1.95
5275412--5275475	25	2.6	25	87	0	83	20	18	14	46	1.83
5275376--5275447	31	2.3	31	92	2	126	19	13	15	51	1.76
5275376--5275495	6	19.3	6	71	19	68	20	16	14	49	1.80
5276581--5276609	15	1.9	15	100	0	58	34	17	6	41	1.76
5276941--5277042	28	3.5	27	71	19	80	24	28	20	26	1.99
5276940--5277069	60	2.2	59	82	9	156	26	26	20	26	1.99
5284565--5284614	14	3.8	14	74	15	61	46	14	20	20	1.84
5284564--5284618	25	2.2	25	80	0	65	43	16	21	18	1.88
5286256--5286326	28	2.5	28	82	8	83	28	16	26	28	1.97
5294366--5294403	20	1.9	20	88	0	58	44	23	13	18	1.85
5295065--5295184	61	2.0	61	100	0	240	30	13	15	40	1.86
5299166--5299217	21	2.5	20	81	9	59	61	5	21	11	1.50
5299637--5299666	3	10.0	3	100	0	60	33	0	0	66	0.92
5300514--5300581	33	2.1	33	100	0	136	44	8	20	26	1.81
5321354--5321401	25	1.9	25	82	0	60	37	22	12	27	1.90
5321445--5321488	20	2.2	20	95	0	79	34	11	20	34	1.88
5321534--5321708	25	7.1	25	92	2	284	32	19	19	29	1.96
5321534--5321728	49	4.0	49	90	3	295	30	20	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5321534--5321728	24	8.0	24	89	4	284	30	20	20	28	1.97
5324045--5324078	17	2.0	17	88	11	52	67	0	0	32	0.91
5324331--5324457	19	6.5	21	81	10	69	40	15	7	36	1.77
5324371--5324457	19	4.7	19	90	8	144	39	14	9	36	1.79
5324371--5324457	35	2.4	36	90	9	140	39	14	9	36	1.79
5328542--5328585	23	2.0	21	82	8	52	31	2	22	43	1.66
5335365--5335537	93	1.9	93	92	0	292	39	6	15	38	1.74
5335947--5335995	25	1.9	26	91	4	82	44	14	12	28	1.81
5336804--5336839	18	1.9	19	88	5	56	44	13	0	41	1.44
5344289--5344355	5	13.2	5	73	20	59	61	2	1	34	1.20
5344298--5344331	17	1.9	18	88	5	52	58	5	2	32	1.37
5344274--5344356	14	6.0	14	75	18	66	60	2	1	36	1.18
5344395--5344600	60	3.3	61	73	17	151	61	2	2	32	1.25
5344424--5344535	31	3.5	30	72	19	77	59	4	1	33	1.28
5344396--5344548	63	2.4	63	78	13	147	60	3	1	34	1.24
5344477--5344523	14	3.2	14	77	19	51	65	4	0	29	1.11
5344487--5344557	16	4.4	16	75	18	58	63	1	2	32	1.18
5344451--5344554	36	2.8	35	78	19	97	62	1	1	33	1.17
5344490--5344574	11	7.4	11	75	14	66	62	1	2	34	1.16
5344482--5344524	14	3.0	14	80	12	52	65	2	0	32	1.06
5344506--5344550	23	1.9	24	95	4	83	60	0	4	35	1.17
5344458--5344574	39	3.3	36	76	14	93	61	1	1	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5344484--5344598	19	6.2	18	69	26	57	64	1	3	30	1.20
5345796--5345844	16	2.9	17	84	9	55	6	8	38	46	1.58
5345851--5345946	48	2.0	48	95	0	174	25	8	32	34	1.85
5346321--5346498	93	2.0	88	84	7	232	38	20	10	31	1.86
5352515--5352567	26	2.0	26	88	0	79	43	15	9	32	1.78
5352513--5352577	26	2.3	28	76	15	71	43	15	10	30	1.81
5354857--5354903	12	3.9	12	77	8	51	27	4	0	68	1.08
5354857--5354903	24	2.0	24	83	8	60	27	4	0	68	1.08
5354975--5355020	22	2.1	22	84	8	58	17	10	4	67	1.37
5355059--5355116	3	19.0	3	85	3	80	27	3	3	65	1.25
5358029--5358055	14	1.9	14	100	0	54	66	11	7	14	1.43
5378839--5378885	19	2.5	19	86	6	60	25	25	10	38	1.88
5382725--5382772	23	2.1	23	88	0	69	58	0	18	22	1.39
5384834--5385226	44	8.6	44	75	10	295	31	17	20	30	1.96
5384921--5385285	96	3.9	96	80	7	356	33	16	20	30	1.95
5384966--5385226	51	5.5	49	76	12	201	31	16	20	31	1.95
5386995--5387021	4	6.8	4	100	0	54	22	0	0	77	0.76
5387097--5387142	22	2.1	22	84	8	58	17	10	4	67	1.37
5388424--5388463	3	13.3	3	100	0	80	67	0	32	0	0.91
5389340--5389381	21	2.0	21	81	9	50	28	23	16	30	1.96
5391288--5391345	28	2.0	29	83	9	75	62	0	6	31	1.22
5391686--5391735	24	2.0	24	84	7	64	58	0	4	38	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5391785--5391836	21	2.3	23	84	15	74	71	0	0	28	0.87
5393491--5394172	197	3.4	201	88	4	971	28	21	18	32	1.96
5393471--5394172	205	3.5	206	88	4	1039	28	21	18	32	1.96
5399418--5399526	37	2.9	37	95	0	191	26	31	19	22	1.98
5399673--5399811	48	2.8	48	90	5	197	28	28	8	33	1.87
5399737--5399926	47	4.0	47	86	5	213	25	28	11	33	1.91
5403870--5404211	40	8.6	40	94	0	585	25	28	22	23	1.99
5405373--5405481	37	2.9	37	95	0	191	26	31	19	22	1.98
5405629--5405733	48	2.2	48	92	1	174	30	27	8	33	1.87
5405691--5405880	47	4.0	47	88	5	231	25	30	11	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345