genome.fa.s6.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  110  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36472747--36472875	64	2.0	64	95	0	231	22	30	18	28	1.97
36475087--36475163	13	5.9	13	85	0	100	35	27	7	29	1.85
36475087--36475163	39	2.0	39	89	0	118	35	27	7	29	1.85
36478824--36478902	37	2.1	37	90	0	122	25	31	18	24	1.98
36479021--36479745	47	15.1	47	91	4	1128	28	29	9	32	1.88
36479032--36479742	145	4.9	143	92	3	1117	28	30	9	32	1.89
36479021--36479745	192	3.8	192	93	2	1190	28	29	9	32	1.88
36489994--36490031	2	19.0	2	100	0	76	0	0	50	50	1.00
36492561--36492638	40	1.9	41	89	7	124	71	0	0	28	0.86
36492561--36492628	8	8.5	8	81	4	75	75	0	0	25	0.81
36496265--36496446	78	2.3	81	83	6	230	26	26	21	24	2.00
36496265--36496448	40	4.7	40	83	6	232	26	26	22	24	2.00
36504284--36504468	79	2.3	81	82	7	218	25	27	22	24	2.00
36504284--36504468	40	4.7	40	82	6	216	25	27	22	24	2.00
36506295--36506340	24	1.9	24	86	8	67	45	4	36	13	1.63
36514971--36515025	25	2.2	26	86	3	76	29	7	1	61	1.33
36521425--36521466	22	2.1	19	86	13	57	45	2	0	52	1.13
36521492--36521559	15	4.2	16	72	12	50	45	0	2	51	1.16
36521504--36521539	17	2.2	17	90	5	56	44	0	0	55	0.99
36526011--36526227	79	2.7	78	81	8	226	24	26	22	26	2.00
36526044--36526227	40	4.7	40	81	7	207	25	26	22	25	2.00
36529311--36529341	3	10.3	3	100	0	62	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36530173--36530217	14	3.3	14	96	3	83	20	6	13	60	1.55
36542449--36542670	40	5.6	39	78	7	189	24	26	21	27	1.99
36542414--36542670	40	6.5	38	76	10	166	24	26	21	27	1.99
36542447--36542610	79	2.1	78	80	5	195	25	26	21	26	1.99
36550698--36550895	39	5.2	39	75	10	169	22	28	21	28	1.99
36550731--36550895	76	2.2	78	79	8	180	23	28	21	27	1.99
36553916--36553992	37	2.1	35	88	4	109	24	31	19	24	1.98
36554111--36554729	47	13.1	47	94	3	1057	29	29	8	32	1.87
36564962--36564999	2	19.0	2	100	0	76	0	0	50	50	1.00
36567094--36567136	12	3.5	12	82	14	52	39	2	4	53	1.34
36567546--36567634	8	10.6	8	77	11	81	69	1	0	29	0.95
36567781--36567820	20	2.1	19	85	4	53	27	2	0	70	1.01
36569262--36569821	241	2.3	241	82	8	654	31	9	13	45	1.76
36573761--36573791	9	3.6	9	95	4	55	19	0	22	58	1.40
36583400--36583487	31	2.9	31	75	6	83	44	10	6	38	1.65
36586715--36586813	29	3.3	31	77	5	80	44	9	17	29	1.79
36592482--36592524	20	2.1	21	95	4	79	60	0	9	30	1.28
36592492--36592535	20	2.2	20	87	4	61	65	2	4	27	1.23
36595039--36595152	44	2.7	43	81	9	133	18	20	24	36	1.94
36595051--36595167	42	2.7	43	80	7	105	20	19	26	33	1.97
36600701--36600769	28	2.5	28	97	0	129	21	21	40	15	1.91
36604481--36604600	44	2.8	43	78	13	113	20	20	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36606244--36606488	89	2.8	89	84	1	294	32	17	24	24	1.97
36607871--36607932	6	10.0	6	82	6	70	75	0	3	20	0.94
36607871--36607945	19	4.0	18	73	13	62	74	2	2	20	1.06
36610030--36610222	89	2.2	89	83	1	244	34	18	24	23	1.96
36610030--36610252	89	2.5	89	81	1	223	35	17	22	23	1.95
36612547--36612830	40	7.1	40	84	3	374	22	21	27	27	1.99
36612547--36612830	120	2.4	120	96	0	514	22	21	27	27	1.99
36613071--36613112	22	1.9	22	85	9	59	33	9	14	42	1.78
36620697--36620980	40	7.1	40	85	1	390	22	21	28	27	1.99
36620697--36620980	120	2.4	120	96	0	514	22	21	28	27	1.99
36621221--36621262	22	1.9	22	85	9	59	33	9	14	42	1.78
36623203--36623234	16	2.0	16	100	0	64	43	6	18	31	1.75
36628012--36628069	7	8.3	7	100	0	116	58	0	0	41	0.98
36628005--36628082	21	3.6	21	91	3	111	60	0	0	39	0.97
36627985--36628094	21	5.7	20	77	19	85	61	0	0	38	0.96
36630644--36630886	129	1.9	129	89	3	382	34	19	20	25	1.96
36632481--36632519	17	2.3	17	86	8	53	43	15	17	23	1.87
36637649--36637739	18	4.9	18	76	17	96	56	9	14	19	1.66
36637627--36637753	57	2.2	58	95	2	229	50	14	14	21	1.77
36640111--36640156	21	2.3	20	78	14	51	45	17	6	30	1.73
36640975--36641018	22	2.0	22	86	0	61	54	2	0	43	1.12
36657829--36657861	16	2.1	16	100	0	66	30	12	12	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36661399--36661425	2	13.5	2	100	0	54	51	0	48	0	1.00
36668029--36668088	30	2.0	30	96	0	111	25	31	16	26	1.96
36670218--36670272	25	2.1	25	83	6	65	21	23	20	34	1.97
36670236--36670378	24	5.8	24	76	9	94	16	25	22	34	1.95
36670288--36670411	25	5.0	25	75	15	98	17	24	22	35	1.95
36670299--36670411	50	2.3	49	77	7	122	17	23	23	34	1.96
36675746--36675787	21	2.0	21	100	0	84	28	9	9	52	1.65
36682192--36682304	43	2.6	43	77	13	117	23	17	29	29	1.97
36687129--36687188	25	2.3	25	80	8	66	25	1	5	68	1.19
36695095--36695175	34	2.4	33	80	15	85	41	1	1	55	1.15
36695153--36695194	22	2.0	20	86	9	57	47	0	0	52	1.00
36695107--36695181	20	4.0	20	67	22	63	41	1	1	56	1.16
36695479--36695872	212	1.9	212	95	0	707	40	11	6	41	1.67
36696243--36696300	21	2.7	24	77	17	65	34	0	3	62	1.12
36696572--36696638	18	3.8	17	74	5	62	52	1	4	41	1.31
36696621--36696673	14	3.8	14	82	0	61	60	1	0	37	1.08
36697108--36697193	40	2.1	41	86	2	120	37	6	3	52	1.46
36697118--36697207	40	2.2	40	80	3	101	40	6	3	50	1.45
36697256--36697408	71	2.1	72	90	2	236	50	3	3	41	1.39
36697464--36697534	17	4.1	17	75	8	63	53	1	2	42	1.24
36700657--36700685	13	2.1	14	93	6	51	51	0	3	44	1.18
36701137--36701187	23	2.2	23	82	6	59	43	5	11	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36701670--36701713	15	2.9	15	82	0	61	36	2	13	47	1.56
36702353--36702393	19	2.2	19	87	12	59	46	0	24	29	1.53
36704076--36704139	22	2.9	22	77	11	69	56	0	3	40	1.15
36704087--36704174	21	4.6	20	70	24	73	57	1	3	37	1.23
36704104--36704169	34	1.9	35	90	9	100	60	1	3	34	1.21
36704267--36704295	11	2.6	11	100	0	58	82	0	10	6	0.83
36704442--36704487	10	4.5	10	75	24	51	63	0	0	36	0.95
36704520--36704586	21	3.1	21	82	8	73	53	0	1	44	1.09
36704520--36704581	22	2.9	22	83	11	83	54	0	0	45	0.99
36704534--36704600	20	3.3	21	83	4	75	58	1	1	38	1.17
36713542--36713603	32	2.0	30	84	12	81	61	12	1	24	1.41
36718206--36718249	6	7.3	6	87	10	63	45	0	36	18	1.49
36718471--36718664	75	2.6	74	82	4	212	42	8	5	44	1.56
36721144--36721178	18	1.9	18	88	0	52	34	28	2	34	1.72
36722204--36722229	6	4.3	6	100	0	52	19	0	46	34	1.50
36728637--36728674	20	1.9	20	84	10	51	26	5	18	50	1.68
36737078--36737116	20	2.0	20	90	5	62	46	2	0	51	1.14
36737702--36737736	14	2.5	14	90	9	54	40	5	22	31	1.78
36738651--36738733	33	2.5	34	74	7	89	31	25	18	25	1.97
36740355--36740494	12	11.7	12	66	11	72	22	38	3	35	1.71
36740350--36740494	24	6.0	24	92	0	236	21	38	4	35	1.73
36743403--36743430	14	2.0	14	100	0	56	42	21	7	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36743986--36744034	6	8.3	6	84	2	64	48	0	48	2	1.12
36748205--36748264	30	2.0	30	100	0	120	30	30	6	33	1.83
36756904--36757059	33	4.8	32	76	4	105	27	23	16	33	1.95
36756937--36757109	33	5.3	33	81	3	134	30	21	12	34	1.91
36757003--36757109	33	3.3	33	87	5	137	29	22	10	37	1.87
36764449--36764525	40	1.9	40	86	5	111	16	14	32	36	1.89
36772487--36772604	29	4.2	29	77	16	104	31	15	23	29	1.95
36772514--36772630	55	2.1	56	85	1	164	30	15	23	30	1.95
36774554--36774682	62	2.1	62	86	0	177	31	24	19	24	1.98
36782395--36782460	27	2.4	27	82	0	69	25	21	15	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345