genome.fa.s6.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  147  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49715691--49715895	80	2.6	79	82	3	234	25	23	26	24	2.00
49719381--49719473	29	3.2	29	86	1	116	27	31	15	25	1.95
49719362--49719486	58	2.2	57	80	7	137	29	29	14	26	1.95
49719703--49719739	16	2.3	16	90	0	56	10	24	16	48	1.77
49727110--49727203	29	3.3	29	74	4	84	28	27	14	28	1.96
49734689--49734729	22	1.9	21	85	14	57	2	24	4	68	1.22
49735886--49735960	27	2.8	27	89	0	114	34	20	20	25	1.96
49736310--49736411	28	3.5	28	77	15	98	25	21	25	27	1.99
49736338--49736408	33	2.1	34	89	2	108	25	22	26	25	2.00
49741604--49741650	21	2.2	21	85	7	60	44	8	27	19	1.79
49744366--49744413	20	2.4	20	96	0	87	43	12	8	35	1.73
49751014--49751238	40	5.7	40	87	5	287	25	27	22	24	2.00
49751014--49751238	119	1.9	120	84	6	305	25	27	22	24	2.00
49758999--49759183	79	2.3	82	84	7	238	25	27	22	24	2.00
49758980--49759183	40	5.1	40	82	8	238	25	27	22	25	2.00
49767685--49767727	22	2.0	22	86	9	61	46	20	4	27	1.71
49771859--49771932	25	3.0	23	69	11	58	20	22	28	28	1.99
49778219--49778403	79	2.3	81	83	7	227	24	22	27	24	2.00
49778220--49778403	40	4.6	40	82	9	207	25	22	27	24	2.00
49778272--49778436	79	2.1	79	83	6	201	26	21	27	24	1.99
49790230--49790357	39	3.2	40	81	9	163	27	25	21	26	1.99
49794047--49794267	39	5.6	39	86	5	261	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49794047--49794265	79	2.8	77	83	8	248	25	28	21	25	1.99
49794047--49794267	118	1.9	117	85	6	304	25	28	21	24	1.99
49794512--49794635	63	2.0	62	93	6	214	26	18	9	45	1.80
49806436--49806700	45	5.9	45	93	0	413	25	19	15	39	1.91
49806814--49806845	16	2.0	16	100	0	64	50	25	12	12	1.75
49810269--49810532	45	5.9	45	93	0	420	25	19	15	39	1.91
49810646--49810677	16	2.0	16	100	0	64	50	25	12	12	1.75
49814101--49814365	45	5.9	45	93	0	413	25	19	15	39	1.91
49814479--49814510	16	2.0	16	93	0	55	50	21	12	15	1.77
49822263--49822295	13	2.6	13	90	4	50	48	12	0	39	1.40
49823578--49823692	29	4.0	29	86	2	126	31	30	11	26	1.91
49825152--49825189	16	2.4	16	90	0	58	18	2	23	55	1.55
49826727--49826828	29	3.6	29	79	1	107	29	29	14	26	1.95
49828315--49828347	16	2.1	16	94	0	57	15	6	30	48	1.69
49829993--49830112	64	1.9	64	85	3	170	25	29	10	35	1.88
49830066--49830134	29	2.4	29	87	2	104	26	28	10	34	1.89
49833712--49833833	43	2.9	42	80	9	158	29	17	24	28	1.97
49834276--49834495	18	12.4	19	86	12	227	37	11	13	37	1.81
49834284--49834497	35	6.0	35	91	4	340	37	11	14	37	1.81
49834284--49834497	53	4.0	53	90	5	333	37	11	14	37	1.81
49837941--49838006	33	2.0	33	90	0	105	30	18	21	30	1.97
49841880--49842053	44	4.0	44	75	8	192	29	16	25	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49842128--49842220	34	2.7	34	88	0	132	32	20	15	32	1.93
49842445--49843329	83	10.7	83	93	0	1457	33	19	20	27	1.96
49844085--49844251	17	9.4	19	84	12	167	38	11	11	37	1.79
49844101--49844253	35	4.3	35	94	2	252	39	11	12	36	1.80
49863601--49863672	25	3.0	25	79	4	85	36	22	22	19	1.95
49865657--49865704	21	2.3	21	92	0	87	56	4	0	39	1.19
49871707--49871741	17	2.1	16	89	5	52	57	0	20	22	1.41
49874060--49874144	43	2.0	43	90	0	134	23	24	23	28	2.00
49877281--49877503	40	5.6	40	90	2	326	23	23	28	24	1.99
49885418--49885648	40	5.8	40	89	2	322	24	23	28	23	2.00
49889844--49889893	25	2.0	25	88	7	75	42	0	20	38	1.52
49890569--49890668	51	2.0	51	97	0	191	37	7	17	39	1.76
49892343--49892402	28	2.2	26	80	11	75	26	25	11	36	1.90
49892350--49892419	28	2.5	28	88	0	113	28	22	10	38	1.87
49903588--49903716	50	2.5	51	88	5	190	34	16	24	25	1.95
49903692--49903871	31	5.8	31	89	0	279	27	18	26	27	1.98
49903891--49904012	47	2.6	47	86	1	156	31	14	25	28	1.95
49905671--49905737	34	2.0	34	96	0	125	26	23	13	35	1.92
49915046--49915148	37	2.8	37	95	0	179	25	31	20	23	1.98
49915321--49915725	48	8.4	48	94	0	684	29	27	8	34	1.86
49919257--49919348	28	3.3	27	77	8	103	31	30	16	21	1.95
49919366--49919634	40	6.8	40	93	3	447	26	31	22	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49920916--49921017	37	2.8	37	95	1	179	24	31	20	23	1.98
49921190--49921543	48	7.4	48	95	1	642	29	27	7	34	1.85
49921190--49921540	94	3.7	95	95	1	641	29	27	7	34	1.85
49928480--49928514	18	1.9	18	88	0	52	40	20	0	40	1.52
49932217--49932255	19	2.1	19	95	0	69	15	38	23	23	1.92
49943036--49943074	17	2.3	17	95	0	69	61	2	0	35	1.10
49943631--49943711	31	2.7	29	76	5	72	35	4	9	49	1.58
49943896--49943930	16	2.2	16	89	0	52	54	8	2	34	1.46
49962722--49963649	305	3.0	307	87	3	1339	49	15	12	22	1.78
49970856--49970888	16	2.1	16	88	5	50	33	12	6	48	1.65
49975264--49975311	24	1.9	26	84	16	66	35	0	6	58	1.23
49982909--49982949	11	3.6	11	87	12	57	90	7	0	2	0.54
49985146--49985283	71	1.9	71	94	0	240	33	17	18	30	1.94
49985220--49985520	74	3.7	82	81	12	354	27	16	21	33	1.95
49984976--49986453	308	4.7	305	78	13	1428	28	15	21	34	1.94
49985661--49985691	16	1.9	16	93	0	53	16	12	6	64	1.47
49985588--49985834	89	2.8	88	84	5	320	28	18	20	32	1.96
49985585--49986491	87	11.3	82	69	20	428	28	15	21	35	1.93
49985775--49985927	72	2.1	73	88	1	227	26	15	23	34	1.94
49985821--49986393	149	3.7	147	82	9	554	27	14	22	36	1.93
49986071--49986474	73	5.3	73	74	15	339	28	15	21	34	1.94
49986316--49986477	84	1.9	84	82	7	204	29	14	22	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49986501--49986734	88	2.7	87	85	1	281	29	15	19	35	1.93
49987745--49987804	23	2.6	24	82	7	63	5	18	3	73	1.16
49988840--49988887	24	1.9	26	84	16	66	35	0	6	58	1.23
49996487--49996526	1	40.0	1	84	0	53	92	5	0	2	0.45
49997108--49997141	11	3.2	11	87	4	52	85	0	11	2	0.71
49998504--50000049	74	19.8	77	72	16	968	28	15	21	34	1.94
49998725--49998862	71	1.9	71	94	0	240	33	17	18	30	1.94
49998554--50000031	308	4.7	305	78	13	1421	28	15	21	34	1.94
49999240--49999270	16	1.9	16	93	0	53	16	12	6	64	1.47
49999167--49999413	89	2.8	88	84	5	320	28	18	20	32	1.96
49999164--50000069	87	11.3	82	69	21	430	27	15	21	35	1.93
49999354--49999506	72	2.1	73	88	1	227	26	15	23	34	1.94
49999400--49999972	149	3.7	147	82	9	554	27	14	22	36	1.93
49999650--50000052	73	5.3	73	75	14	319	28	15	21	34	1.94
49999895--50000055	83	1.9	83	82	7	202	29	14	22	32	1.94
50000080--50000313	88	2.7	87	85	1	281	29	15	19	35	1.93
50001325--50001384	23	2.6	24	82	7	63	5	18	3	73	1.16
50001950--50001975	3	8.7	3	100	0	52	30	0	0	69	0.89
50002424--50002471	24	1.9	26	84	16	66	35	0	6	58	1.23
50006278--50006397	60	2.0	60	98	0	231	23	27	15	34	1.94
50014332--50014375	20	2.1	21	83	4	54	20	0	18	61	1.35
50018716--50018766	19	2.7	19	96	0	93	23	5	13	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50020841--50020946	54	2.0	54	92	0	176	33	6	15	45	1.72
50032146--50032194	25	2.0	25	91	0	80	28	16	26	28	1.97
50034600--50034645	17	2.9	15	81	15	56	50	2	0	47	1.13
50034577--50034645	14	4.6	15	71	18	54	50	1	0	47	1.09
50034583--50034642	33	1.9	29	83	12	75	48	1	0	50	1.11
50035464--50035500	15	2.5	15	84	16	51	24	5	2	67	1.25
50036717--50036781	20	3.2	20	84	4	78	63	4	1	30	1.24
50036717--50036781	10	6.5	10	72	11	53	63	4	1	30	1.24
50036840--50036874	17	2.0	17	88	5	52	48	11	0	40	1.39
50039639--50039687	25	1.9	26	83	4	64	48	2	10	38	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345