genome.fa.s6.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  116  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38391280--38391320	17	2.5	17	84	11	50	46	2	9	41	1.50
38393699--38393756	28	2.1	28	93	0	98	36	18	27	17	1.94
38397460--38397561	43	2.4	43	78	3	107	28	16	23	31	1.96
38400851--38400914	18	3.6	18	80	0	83	32	10	14	42	1.80
38400839--38400926	36	2.4	36	86	0	131	36	12	12	38	1.81
38411175--38411286	46	2.4	46	82	2	127	28	21	15	34	1.94
38416335--38416360	10	2.6	10	100	0	52	26	0	0	73	0.84
38417433--38417488	28	1.9	29	85	7	78	50	10	5	33	1.60
38418204--38418290	31	2.8	31	79	10	97	40	8	11	40	1.71
38429033--38429098	33	2.0	33	100	0	132	33	18	18	30	1.94
38430198--38430464	103	2.6	104	88	4	414	18	20	29	31	1.96
38442385--38442464	38	2.1	38	97	0	151	30	15	11	43	1.81
38442632--38442685	22	2.5	22	71	0	54	62	5	7	24	1.42
38448625--38448658	9	3.7	9	84	7	50	76	0	0	23	0.79
38450783--38450845	30	2.1	30	93	0	108	28	3	11	57	1.49
38459513--38459598	40	2.2	40	93	0	145	40	20	15	23	1.90
38466886--38466922	17	2.2	17	100	0	74	48	0	0	51	1.00
38466925--38467008	6	13.7	6	68	20	50	75	3	20	1	1.03
38466925--38467008	11	6.8	12	70	18	50	75	3	20	1	1.03
38467652--38467698	24	2.0	24	84	16	62	31	0	17	51	1.46
38469770--38469825	25	2.2	25	84	6	69	33	26	14	25	1.94
38469813--38469933	25	4.8	25	73	2	89	38	26	13	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38469875--38469930	26	2.2	26	80	6	60	39	26	12	21	1.89
38473247--38473308	22	3.0	21	70	15	56	51	12	19	16	1.76
38473292--38473333	22	1.9	22	90	0	66	40	16	23	19	1.91
38474715--38474753	19	2.1	19	85	0	51	0	30	2	66	1.05
38478330--38478368	19	2.1	19	85	0	51	2	30	0	66	1.05
38481917--38481967	17	3.0	17	76	0	57	70	7	5	15	1.30
38484157--38484234	38	2.1	38	97	0	147	39	17	2	39	1.64
38485926--38486006	40	2.0	40	100	0	162	32	14	7	45	1.73
38496864--38496903	19	2.0	20	85	4	55	40	10	22	27	1.86
38497689--38497753	32	2.0	32	96	0	121	29	13	27	29	1.95
38498149--38498224	30	2.5	30	81	8	84	13	13	13	60	1.59
38500631--38500803	46	3.8	46	74	17	169	20	17	30	31	1.96
38504556--38505239	44	15.5	44	88	0	990	29	13	27	28	1.94
38506894--38506930	12	3.0	12	84	7	56	35	5	0	59	1.20
38507086--38507154	10	7.2	10	76	17	51	31	5	0	62	1.19
38507158--38507202	21	2.3	21	85	11	60	24	8	0	66	1.20
38510251--38510277	14	1.9	14	100	0	54	29	3	22	44	1.70
38514660--38514725	13	5.5	13	72	20	63	45	18	0	36	1.49
38514660--38514734	23	3.3	23	88	0	114	46	17	0	36	1.48
38518744--38518822	31	2.5	31	95	0	140	27	25	18	27	1.98
38518846--38518937	42	2.2	42	94	0	157	39	20	11	28	1.88
38519045--38519167	26	4.8	26	90	1	187	26	22	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38519033--38519167	52	2.7	51	91	4	222	26	22	22	28	1.99
38519217--38519292	20	3.9	20	86	8	104	32	19	10	36	1.86
38519217--38519272	11	5.5	11	75	16	66	30	19	12	37	1.89
38520085--38520417	27	12.3	27	78	5	199	30	8	20	40	1.82
38520105--38520241	56	2.5	54	78	10	143	32	6	17	43	1.75
38520198--38520403	54	3.8	53	80	4	243	29	8	20	42	1.81
38520196--38520403	80	2.6	81	84	2	276	29	8	20	41	1.81
38520087--38520417	54	6.1	53	75	8	227	30	8	20	40	1.81
38520396--38520712	27	11.7	27	87	0	391	41	8	21	29	1.82
38520730--38520883	78	2.0	78	97	0	290	38	24	18	18	1.92
38522579--38522607	11	2.5	12	88	11	51	24	0	27	48	1.51
38523961--38524034	29	2.6	29	84	4	87	25	32	16	25	1.96
38527974--38528264	47	6.1	47	91	1	456	27	29	8	34	1.87
38527974--38528260	96	3.0	96	89	2	452	26	29	9	34	1.87
38532749--38532773	13	1.9	13	100	0	50	16	32	36	16	1.90
38538980--38539043	8	8.1	8	80	13	71	51	3	1	43	1.26
38539001--38539042	22	2.0	21	86	13	59	50	2	0	47	1.14
38540567--38540608	19	2.2	19	95	0	75	23	14	9	52	1.71
38546540--38546591	16	3.3	16	76	12	54	15	28	1	53	1.52
38552470--38552614	42	3.3	41	83	10	164	29	26	13	30	1.94
38552521--38552657	49	2.9	48	86	4	179	31	27	12	29	1.93
38552536--38552704	47	3.6	46	84	3	176	30	27	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38552495--38552704	95	2.3	94	82	8	236	30	26	14	28	1.95
38552726--38552843	31	3.8	31	93	0	191	24	27	20	27	1.99
38558255--38558395	49	2.8	49	82	2	183	26	19	24	28	1.99
38558250--38558382	51	2.6	51	84	2	180	25	19	26	28	1.99
38563863--38564050	50	3.8	49	82	2	214	26	17	26	30	1.97
38563910--38563993	28	3.2	28	62	25	74	25	16	28	29	1.97
38563863--38564049	99	1.9	100	85	1	259	25	17	26	30	1.97
38566822--38566855	17	1.9	18	94	5	61	35	14	17	32	1.91
38568760--38568856	4	23.8	4	78	15	92	69	3	25	2	1.14
38569915--38569974	6	9.8	6	75	1	57	16	21	16	45	1.86
38569915--38569972	12	4.8	12	82	2	71	17	22	17	43	1.88
38570111--38570145	18	1.9	18	88	0	52	45	11	11	31	1.76
38582979--38583046	33	2.1	33	94	0	118	20	20	25	33	1.97
38583735--38584128	126	3.2	126	84	3	510	30	17	15	36	1.91
38584187--38584284	35	2.9	34	82	8	119	45	13	0	40	1.43
38584333--38584415	42	2.0	42	90	4	132	44	27	2	25	1.66
38587993--38588025	16	2.1	16	100	0	66	33	0	18	48	1.48
38588422--38588531	52	2.1	52	98	0	211	20	4	28	47	1.69
38592019--38592123	47	2.2	47	82	0	138	20	10	20	48	1.78
38593358--38593535	47	3.8	47	82	5	200	32	26	19	21	1.97
38600688--38600766	29	2.7	29	86	5	106	27	32	15	24	1.95
38604125--38604247	27	4.6	27	90	2	133	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38607960--38608142	40	4.6	40	86	2	251	25	24	25	24	2.00
38608405--38608448	22	2.0	22	82	8	54	31	11	13	43	1.80
38611305--38611482	27	6.6	27	83	3	196	27	14	28	29	1.95
38611305--38611482	54	3.3	55	82	4	218	27	14	28	29	1.95
38613366--38613511	43	3.4	43	94	3	267	22	15	34	26	1.94
38613493--38613566	29	2.6	29	85	8	89	25	16	32	25	1.96
38621818--38622152	47	7.1	47	92	2	537	32	9	30	28	1.88
38621818--38622152	142	2.4	142	91	2	539	32	9	30	28	1.88
38624146--38624291	43	3.4	43	98	0	283	23	15	34	26	1.94
38624273--38624346	29	2.6	29	89	4	105	25	16	32	25	1.96
38624656--38624835	40	4.5	39	78	8	168	25	22	27	24	2.00
38624656--38624852	80	2.5	79	79	9	193	25	22	27	24	2.00
38628534--38628962	47	9.1	47	92	1	669	31	9	30	28	1.88
38640945--38641120	46	3.8	46	71	12	162	21	19	27	30	1.98
38640942--38641113	93	1.8	93	88	0	263	22	20	27	29	1.98
38644806--38644897	28	3.3	28	89	0	148	25	35	16	22	1.94
38657979--38658183	27	7.6	27	82	2	223	40	19	7	32	1.79
38657979--38658184	54	3.8	54	88	1	297	40	19	7	32	1.79
38657979--38658184	81	2.5	80	85	1	268	40	19	7	32	1.79
38658151--38658218	34	2.0	34	91	0	109	38	22	8	30	1.84
38658097--38658272	88	2.0	88	83	2	219	39	19	7	33	1.80
38658185--38658306	27	4.5	27	82	2	120	37	20	9	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38658087--38658299	115	1.9	115	81	2	266	39	20	7	31	1.81
38658043--38658298	142	1.8	142	81	1	325	39	20	7	32	1.81
38658338--38658667	27	12.3	27	84	0	383	35	20	19	24	1.95
38659097--38659158	22	2.8	22	85	7	81	22	22	20	33	1.97
38659317--38659418	27	3.8	27	84	5	125	19	23	20	36	1.95
38661601--38661916	27	11.7	26	82	5	299	39	20	8	31	1.83
38661591--38661862	54	5.0	54	87	2	375	39	19	8	32	1.82
38661845--38661970	27	4.7	27	78	7	103	38	22	7	31	1.83
38661961--38662210	27	9.3	27	88	4	353	35	20	20	24	1.96
38662655--38662719	22	3.0	22	77	8	69	20	21	23	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345