Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  322  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108363337--108363437
39
2.6
39
90
0
148
14
25
21
37
1.92
108366051--108366091
8
5.5
8
83
16
61
39
0
0
60
0.96
108366055--108366086
13
2.5
13
100
0
64
37
0
0
62
0.95
108366051--108366098
21
2.3
21
96
0
87
39
0
2
58
1.10
108366052--108366098
11
4.2
12
79
20
57
38
0
2
59
1.09
108368340--108368377
19
2.0
20
84
5
51
34
0
18
47
1.49
108380674--108380737
12
5.4
12
73
14
53
73
3
7
15
1.19
108380816--108381144
3
109.7
3
73
8
242
62
3
5
29
1.34
108381001--108381079
19
4.4
18
76
17
69
62
0
5
32
1.17
108381143--108381180
3
12.7
3
100
0
76
68
0
31
0
0.90
108382045--108382083
18
2.1
19
86
13
55
69
0
25
5
1.09
108385172--108385230
27
2.2
27
100
0
118
28
22
11
37
1.89
108385549--108385603
16
3.5
15
78
11
56
21
20
0
58
1.40
108386604--108386639
17
2.1
17
89
0
54
61
0
0
38
0.96
108386596--108386675
38
2.0
40
84
13
105
57
1
0
41
1.07
108399208--108399420
9
23.4
9
68
21
65
59
3
2
34
1.28
108399283--108399343
19
3.3
18
81
11
61
59
4
0
36
1.19
108399319--108399393
25
3.0
24
73
15
62
60
2
2
34
1.25
108405552--108405610
16
3.8
16
80
10
70
61
0
1
37
1.07
108406705--108406767
28
2.2
30
82
5
76
39
1
11
47
1.49
108408324--108408358
19
1.9
17
88
11
52
42
0
2
54
1.15
108416480--108416605
51
2.5
51
82
0
162
42
14
4
38
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108421678--108421813
51
2.7
51
77
6
159
41
14
5
37
1.70
108422349--108422430
38
2.2
36
81
16
96
17
6
4
71
1.24
108433196--108433242
20
2.3
21
78
14
53
12
36
19
31
1.89
108439360--108439417
30
1.9
30
89
6
91
15
27
34
22
1.94
108449229--108449390
11
14.1
11
73
12
67
22
39
16
20
1.92
108449244--108449330
23
3.8
23
79
7
97
22
41
14
20
1.89
108449244--108449349
34
3.1
34
78
5
99
24
38
16
20
1.92
108452916--108452946
16
1.9
16
93
0
53
35
3
6
54
1.42
108454651--108454704
21
2.6
20
82
5
63
64
0
0
35
0.94
108454667--108454704
10
3.7
10
96
3
67
71
0
0
28
0.87
108454650--108454706
10
5.6
10
84
10
62
61
0
0
38
0.96
108459686--108459745
28
2.0
31
84
9
81
35
3
1
60
1.23
108459751--108459782
16
2.0
16
93
0
55
56
0
3
40
1.15
108460749--108460786
14
2.7
14
91
0
58
36
7
18
36
1.80
108460761--108460799
14
2.9
14
88
3
53
41
2
17
38
1.64
108460789--108460866
33
2.4
32
81
8
86
25
7
20
46
1.77
108464744--108464872
16
7.9
16
68
11
91
36
33
8
21
1.84
108464747--108464874
33
3.8
35
78
10
126
36
32
8
21
1.84
108464747--108464874
66
1.9
66
84
6
170
36
32
8
21
1.84
108464822--108464884
33
1.9
33
90
0
99
38
33
9
19
1.84
108468020--108468187
46
3.6
46
74
13
164
29
24
21
24
1.99
108474263--108474438
46
3.8
45
78
15
189
30
28
19
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108477985--108478035
24
2.0
27
85
11
72
47
0
7
45
1.32
108482502--108482534
17
1.9
17
100
0
66
45
24
6
24
1.75
108492903--108492944
22
1.9
22
90
0
66
28
16
28
26
1.97
108495588--108495836
50
4.8
50
85
4
284
20
29
24
26
1.99
108495587--108495836
100
2.4
104
88
6
357
20
29
24
26
1.99
108495931--108495962
13
2.5
13
94
0
55
56
12
0
31
1.37
108496174--108496231
30
1.9
30
89
0
89
31
24
3
41
1.71
108503178--108503426
50
4.8
50
85
4
284
20
29
24
26
1.99
108503177--108503426
100
2.4
104
88
6
357
20
29
24
26
1.99
108503521--108503552
13
2.5
13
94
0
55
56
12
0
31
1.37
108503764--108503821
30
1.9
30
89
0
89
31
24
3
41
1.71
108505409--108505459
20
2.5
20
87
0
75
17
41
19
21
1.91
108514696--108514767
26
2.8
26
80
0
81
63
6
4
25
1.37
108514987--108515057
33
2.1
34
87
7
101
60
2
12
23
1.45
108514987--108515041
18
3.2
18
80
19
73
61
3
10
23
1.44
108516813--108516839
13
2.1
13
100
0
54
14
37
33
14
1.88
108533309--108533336
14
2.0
14
100
0
56
50
21
7
21
1.72
108537345--108537402
29
2.0
29
100
0
116
37
24
3
34
1.72
108544579--108544649
35
2.0
35
100
0
142
47
15
5
30
1.68
108549904--108549961
25
2.3
25
87
0
80
44
17
6
31
1.75
108560317--108560544
46
5.0
46
91
1
323
39
14
23
21
1.91
108564322--108564368
22
2.2
22
85
7
62
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108564335--108564379
21
2.3
19
84
7
54
62
0
0
37
0.96
108567076--108567113
19
2.0
19
94
0
67
34
10
23
31
1.89
108567985--108568017
5
6.8
5
86
6
50
78
0
3
18
0.87
108568262--108568312
8
6.5
8
78
13
52
7
7
0
84
0.78
108570191--108570221
11
2.8
11
90
0
53
32
0
0
67
0.91
108570413--108570452
11
3.6
11
82
0
53
57
5
15
22
1.57
108570859--108570909
24
2.2
23
82
10
59
52
1
1
43
1.23
108572581--108572619
15
2.7
15
88
4
53
66
0
0
33
0.92
108577055--108577105
19
3.2
15
73
21
50
43
0
1
54
1.11
108577173--108577228
22
2.6
22
83
5
62
51
0
0
48
1.00
108577844--108577884
19
2.2
19
86
0
55
34
12
14
39
1.84
108578052--108578080
6
4.8
6
100
0
58
13
0
0
86
0.58
108578549--108578681
40
3.3
40
84
5
119
36
24
19
19
1.95
108578576--108578681
40
2.6
41
87
3
160
32
26
20
20
1.98
108578736--108578786
16
3.2
16
79
17
61
50
35
1
11
1.50
108579900--108579951
8
6.9
8
82
12
74
67
0
0
32
0.91
108579900--108579951
23
2.3
23
96
3
97
67
0
0
32
0.91
108579900--108579958
15
3.9
15
80
6
66
64
0
0
35
0.94
108583420--108583635
23
9.4
23
74
8
158
33
6
21
38
1.78
108583420--108583640
46
4.8
46
71
9
175
33
5
21
38
1.77
108584571--108585870
23
56.8
23
76
8
920
31
6
23
38
1.81
108584561--108585684
229
4.9
227
90
2
1291
31
6
23
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108584915--108585425
183
2.8
182
89
1
754
31
6
23
38
1.80
108584686--108585868
412
2.8
410
90
3
1765
31
6
23
38
1.81
108585574--108585821
137
1.8
138
81
9
319
31
7
23
37
1.82
108584571--108585868
229
5.7
223
87
5
1086
31
6
23
38
1.81
108589426--108589494
25
2.7
26
73
6
70
33
1
11
53
1.46
108598426--108598634
98
2.1
99
92
0
348
53
5
4
36
1.43
108609317--108609348
3
10.7
3
100
0
64
0
34
0
65
0.93
108613638--108613676
10
3.7
10
83
10
51
0
17
0
82
0.68
108613638--108613679
21
2.0
21
95
4
75
0
16
0
83
0.65
108613638--108613679
22
2.1
19
86
13
57
0
16
0
83
0.65
108613638--108613678
15
2.6
16
88
11
66
0
17
0
82
0.66
108621198--108621235
19
2.0
19
89
0
58
52
2
0
44
1.14
108627094--108627122
4
7.2
4
100
0
58
0
24
0
75
0.80
108630277--108630336
31
1.9
31
89
0
93
30
23
8
38
1.84
108630682--108630719
17
2.2
18
85
4
51
28
0
2
68
1.03
108630838--108630886
21
2.3
22
82
10
57
44
0
0
55
0.99
108633946--108634067
10
12.2
10
70
22
71
28
4
3
63
1.28
108633973--108634012
8
4.6
8
82
17
53
22
5
0
72
1.04
108633962--108634003
18
2.2
20
83
8
52
23
7
0
69
1.13
108633961--108634007
19
2.4
18
86
10
58
25
6
0
68
1.13
108636527--108636676
61
2.5
60
87
8
214
26
24
11
38
1.89
108639843--108639886
20
2.2
21
84
12
65
47
2
0
50
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108639843--108639894
20
2.6
19
82
11
50
48
1
0
50
1.12
108639921--108639957
17
2.2
18
85
9
51
18
10
0
70
1.16
108647107--108647286
63
2.9
63
80
5
184
30
6
33
30
1.83
108650792--108650856
29
2.2
29
86
2
85
58
6
0
35
1.23
108650830--108650877
23
2.0
23
88
4
69
60
2
0
37
1.09
108651697--108651780
43
1.9
44
92
2
143
51
2
9
36
1.48
108651677--108651780
43
2.5
42
86
7
126
50
1
8
39
1.44
108652381--108652425
21
2.0
23
83
8
58
44
2
2
51
1.26
108662976--108663005
14
2.1
14
93
0
51
66
0
3
30
1.07
108663579--108663630
26
2.0
26
96
0
95
19
32
7
40
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345