Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  326  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109602842--109602892
15
3.5
15
86
2
77
35
0
11
52
1.38
109606013--109606057
20
2.2
21
84
4
56
37
17
2
42
1.62
109607732--109607959
46
5.0
46
92
1
305
40
14
23
21
1.90
109609003--109609042
19
2.1
19
85
0
53
62
12
12
12
1.55
109611946--109611972
14
1.9
14
100
0
54
74
7
3
14
1.18
109612032--109612089
19
3.1
18
80
11
71
62
0
0
37
0.96
109613047--109613122
37
2.1
37
92
0
125
27
28
9
34
1.88
109613446--109613498
19
2.6
20
76
11
54
56
7
13
22
1.62
109613454--109613497
19
2.2
20
88
4
63
56
4
13
25
1.56
109616050--109616083
17
2.0
17
94
0
59
50
0
0
50
1.00
109620132--109620183
15
3.6
15
80
12
56
44
0
1
53
1.11
109620248--109620282
18
2.0
17
88
5
52
40
0
0
60
0.97
109620077--109620419
120
2.9
120
96
0
632
42
2
5
49
1.38
109620080--109620387
61
5.1
60
68
16
242
42
1
6
49
1.39
109620368--109620402
18
2.0
17
88
5
52
45
0
0
54
0.99
109620356--109620630
147
1.9
149
96
1
509
47
2
3
46
1.33
109620515--109620549
18
2.0
17
88
5
52
45
0
0
54
0.99
109620698--109620802
44
2.5
40
76
15
113
31
26
3
38
1.74
109620711--109620805
45
2.1
45
90
1
147
33
25
4
36
1.75
109620786--109620837
16
3.2
16
94
0
86
34
36
0
28
1.58
109621628--109621814
103
1.8
103
100
0
374
24
10
24
40
1.87
109627095--109627162
33
2.1
33
85
0
91
38
20
20
20
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109628194--109628236
20
2.2
20
86
0
59
62
0
37
0
0.95
109633366--109633391
12
2.2
12
100
0
52
34
7
0
57
1.27
109633454--109633483
15
1.9
16
93
6
53
66
13
13
6
1.43
109633485--109633530
19
2.4
19
81
0
65
67
0
32
0
0.91
109638741--109638766
12
2.2
12
100
0
52
34
7
0
57
1.27
109638829--109638858
15
1.9
16
93
6
53
66
13
13
6
1.43
109638806--109638856
20
2.7
19
74
14
52
72
9
11
5
1.27
109638862--109638895
4
8.5
4
87
12
52
76
0
23
0
0.79
109643135--109643188
3
18.3
3
80
3
56
57
0
7
35
1.27
109643306--109643354
15
2.7
19
70
29
52
63
0
8
28
1.23
109643316--109643421
43
2.4
45
82
6
137
63
0
6
30
1.20
109645190--109645271
41
2.0
41
97
0
155
24
13
17
45
1.84
109646813--109646853
15
2.7
15
85
14
57
68
4
19
7
1.32
109646858--109646903
20
2.3
20
81
3
58
67
0
32
0
0.91
109648039--109648085
24
2.0
24
83
8
60
36
4
19
40
1.71
109649665--109649753
33
2.7
32
80
15
99
25
2
29
42
1.67
109652963--109653000
15
2.5
15
84
12
51
47
7
0
44
1.32
109660343--109660402
20
3.1
19
83
9
59
51
1
1
45
1.21
109660371--109660476
20
5.2
19
71
18
70
58
2
0
37
1.19
109662472--109662522
19
2.7
18
84
9
57
58
0
1
39
1.09
109668817--109668841
9
2.8
9
100
0
50
44
0
0
56
0.99
109669209--109669255
18
2.7
18
81
15
55
2
23
0
74
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109670636--109670665
15
2.0
15
93
0
51
50
13
16
20
1.78
109672306--109672500
49
3.9
49
80
5
239
26
18
25
28
1.98
109672308--109672495
100
1.9
100
93
0
322
26
19
25
29
1.99
109676018--109676129
45
2.4
46
81
12
131
35
18
23
22
1.96
109676004--109676166
23
6.8
24
73
10
113
31
19
23
25
1.98
109687344--109687373
15
2.1
14
93
6
51
56
6
16
20
1.62
109687484--109687539
21
2.6
20
83
13
67
50
0
10
39
1.37
109687509--109687560
25
2.1
24
85
3
68
53
3
3
38
1.37
109688408--109688452
17
2.7
16
86
10
63
24
0
0
75
0.80
109689740--109689787
14
3.5
14
82
5
62
58
10
14
16
1.63
109689739--109689778
13
3.0
13
85
3
53
55
10
15
20
1.68
109689767--109690268
86
6.0
83
81
8
572
35
20
15
28
1.93
109689770--109690270
85
6.0
84
80
8
544
36
20
15
27
1.93
109690226--109690335
54
2.0
55
94
1
195
39
17
14
29
1.89
109690409--109690440
15
2.2
14
94
5
55
65
3
12
18
1.38
109690280--109690508
90
2.6
90
84
8
294
34
19
16
30
1.93
109690056--109690513
232
2.0
223
85
8
602
36
20
15
28
1.93
109703107--109703157
21
2.4
21
86
0
66
49
0
11
39
1.40
109703128--109703177
25
2.0
24
84
3
64
54
4
4
38
1.38
109704018--109704066
18
2.6
19
84
12
66
24
2
0
73
0.94
109704025--109704066
16
2.5
17
88
7
59
26
0
0
73
0.83
109706860--109706897
19
2.0
19
85
10
51
68
0
10
21
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109714936--109714975
18
2.1
20
86
9
57
55
2
15
27
1.53
109715631--109715668
18
2.1
19
95
5
69
52
0
26
21
1.47
109718293--109718321
15
1.9
15
100
0
58
34
0
0
65
0.93
109718882--109718937
27
2.1
27
96
0
103
37
0
12
50
1.41
109719458--109719530
29
2.6
29
82
2
94
21
15
26
36
1.93
109720626--109721194
285
2.0
286
92
0
960
30
15
22
31
1.95
109724821--109724858
5
7.8
5
88
5
60
78
0
2
18
0.86
109724815--109724857
19
2.3
19
87
0
68
76
0
2
20
0.89
109737862--109737897
16
2.3
15
86
9
54
36
0
0
63
0.94
109738582--109738681
41
2.6
39
73
9
105
23
20
29
28
1.98
109738584--109738678
37
2.4
41
75
8
99
23
20
29
27
1.98
109739388--109739476
42
2.1
42
97
2
171
34
6
14
43
1.72
109741700--109741807
26
4.2
26
90
0
180
32
7
24
36
1.83
109743293--109743345
26
2.0
26
82
7
63
39
20
15
24
1.91
109747868--109747903
16
2.3
15
86
9
54
36
0
0
63
0.94
109748224--109748265
16
2.7
16
78
14
52
42
0
0
57
0.99
109749068--109749103
18
2.1
18
89
5
56
41
0
25
33
1.55
109749719--109749821
38
2.6
39
77
7
111
25
20
25
29
1.99
109751060--109751096
8
4.6
8
100
0
74
10
0
0
89
0.49
109751044--109751101
21
2.8
20
84
7
62
12
0
5
82
0.82
109763783--109763822
21
2.0
21
90
5
64
22
42
10
25
1.84
109771266--109771481
6
36.0
6
95
0
306
33
5
16
44
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109775276--109775328
24
2.2
25
89
6
90
64
1
3
30
1.22
109776492--109776543
27
2.0
25
88
7
77
21
3
7
67
1.32
109783473--109783587
44
2.6
44
85
2
149
35
13
22
27
1.92
109783473--109783606
46
3.0
45
82
4
153
35
14
23
26
1.93
109790845--109790959
44
2.6
44
85
2
149
35
13
22
27
1.92
109790845--109790978
46
3.0
45
82
4
153
35
14
23
26
1.93
109794151--109794269
58
2.1
58
95
0
211
42
19
10
28
1.83
109797303--109797328
11
2.4
11
100
0
52
50
0
7
42
1.31
109797336--109797396
28
2.1
30
84
6
81
27
0
3
68
1.05
109797354--109797398
19
2.4
18
75
7
54
31
0
4
64
1.13
109798008--109798138
59
2.2
59
84
8
160
51
0
2
45
1.19
109798181--109798218
10
3.9
10
89
3
51
52
2
0
44
1.14
109814016--109814074
11
5.7
11
76
17
56
71
1
0
27
0.96
109814011--109814073
10
6.6
10
77
18
64
71
1
0
26
0.95
109814016--109814063
21
2.3
21
92
3
80
72
2
0
25
0.95
109814011--109814073
19
3.3
18
83
16
83
71
1
0
26
0.95
109814012--109814074
21
3.2
20
85
12
78
73
1
0
25
0.93
109813998--109814073
30
2.7
26
75
16
71
67
1
0
31
0.99
109820427--109820506
31
2.6
30
80
5
81
46
11
7
35
1.68
109820598--109820663
30
2.2
30
83
5
80
43
3
12
40
1.57
109821586--109821643
30
1.9
31
89
3
91
36
6
3
53
1.45
109824225--109824276
11
4.9
11
83
9
72
28
28
0
42
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109824219--109824276
20
2.7
21
86
10
82
31
27
0
41
1.56
109826072--109826114
18
2.4
18
92
0
68
16
27
11
44
1.82
109826499--109826824
116
2.8
116
98
0
625
39
3
8
47
1.52
109826780--109826857
33
2.4
34
93
4
133
39
2
5
52
1.37
109826867--109827144
54
4.9
60
69
22
179
41
3
8
46
1.51
109826664--109826970
146
2.1
150
95
3
561
40
3
8
47
1.51
109826813--109827140
113
2.9
113
90
4
502
40
3
8
47
1.50
109826548--109827085
262
2.0
265
94
2
951
40
3
8
47
1.51
109826969--109827143
52
3.2
52
69
19
131
42
3
7
46
1.48
109830158--109830685
126
4.2
126
91
1
862
26
21
18
33
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345