genome.fa.s6.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  205  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69494761--69494927	46	3.6	45	78	12	178	28	28	20	22	1.98
69503935--69504018	29	2.9	28	81	8	98	16	20	44	19	1.87
69508626--69508688	20	3.0	21	68	9	65	19	9	26	44	1.81
69508603--69508688	42	2.0	43	90	2	138	23	10	23	43	1.84
69521443--69521509	21	3.2	20	71	10	62	20	10	26	41	1.85
69521440--69521525	42	2.0	43	90	2	138	22	9	24	44	1.82
69524021--69524597	47	12.3	47	90	0	913	32	8	31	27	1.87
69530450--69530474	13	1.9	13	100	0	50	52	0	8	40	1.31
69531033--69531082	20	2.4	21	86	6	75	44	0	34	22	1.53
69531254--69531293	15	2.4	18	80	19	52	42	0	17	40	1.49
69531571--69531742	43	4.0	43	72	13	138	25	18	23	32	1.97
69539216--69539364	43	3.5	42	73	11	115	26	19	23	30	1.98
69542211--69542240	15	1.9	16	93	6	53	43	0	0	56	0.99
69544134--69544240	52	2.1	52	96	0	196	28	23	11	36	1.89
69548906--69548975	29	2.4	29	90	0	104	37	10	25	27	1.88
69548967--69549037	29	2.4	29	81	9	74	33	12	35	18	1.89
69568267--69568380	43	2.7	44	77	8	119	34	21	16	27	1.95
69572322--69572417	34	2.8	34	72	12	88	27	25	23	23	2.00
69573310--69573357	18	2.7	18	73	0	51	62	6	2	29	1.31
69584598--69584788	29	6.6	28	78	8	129	36	12	28	23	1.90
69584592--69584788	58	3.4	57	69	17	154	36	12	27	23	1.90
69584558--69584755	87	2.3	86	81	6	229	36	12	26	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69584715--69584827	59	1.9	59	81	3	138	38	15	25	21	1.92
69587561--69587590	16	1.9	15	93	6	51	43	0	23	33	1.54
69595133--69595350	27	8.2	26	81	6	206	25	12	19	42	1.87
69595140--69595350	54	3.9	54	83	5	268	25	13	19	41	1.88
69595149--69595350	107	1.9	107	88	4	309	24	13	19	42	1.87
69595140--69595352	80	2.7	81	83	5	256	25	13	19	41	1.87
69595677--69595725	18	2.7	18	77	0	53	20	18	10	51	1.75
69597489--69597563	6	12.3	6	78	13	82	49	13	18	18	1.79
69597516--69597613	25	3.7	25	74	19	99	48	11	19	20	1.79
69597510--69597613	31	3.5	31	78	17	132	49	11	19	20	1.79
69597729--69597799	27	2.7	26	71	16	65	40	18	21	19	1.91
69597822--69597878	20	2.8	20	78	2	69	40	31	17	10	1.84
69599382--69599566	79	2.3	82	82	7	220	25	27	22	24	2.00
69599382--69599566	40	4.7	40	82	7	216	25	27	22	24	2.00
69607284--69607470	40	4.7	40	80	10	195	24	28	22	24	1.99
69611881--69612910	1	1030.0	1	84	0	1169	2	4	2	90	0.60
69622286--69622509	40	5.6	39	85	5	272	24	21	28	25	1.99
69622286--69622509	79	2.8	79	85	4	283	24	21	28	25	1.99
69627014--69627040	11	2.5	11	100	0	54	48	0	18	33	1.49
69629119--69629227	43	2.5	43	86	0	146	33	15	19	31	1.93
69631600--69631626	11	2.5	11	100	0	54	48	0	18	33	1.49
69635452--69635571	43	2.8	42	87	8	127	33	15	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69635480--69635571	43	2.1	43	96	4	168	29	17	21	31	1.96
69635501--69635635	72	1.9	72	92	3	227	28	14	22	34	1.94
69635573--69635666	43	2.2	43	90	0	152	29	14	22	32	1.94
69636829--69636907	28	2.8	28	84	0	104	36	11	22	29	1.89
69639225--69639300	24	3.2	24	92	0	125	32	2	40	23	1.69
69640692--69640749	27	2.1	27	87	0	80	15	22	24	37	1.93
69651628--69651705	6	12.7	6	75	10	68	79	1	3	15	0.94
69651611--69651705	28	3.4	29	77	15	101	75	2	5	16	1.08
69651629--69651704	38	2.0	39	85	12	104	78	1	3	15	0.96
69656544--69656602	31	1.9	31	100	0	118	28	15	20	35	1.93
69662667--69662915	45	5.3	48	78	13	211	28	17	30	24	1.97
69664169--69664208	21	2.0	20	85	5	53	15	40	25	20	1.90
69666501--69666544	18	2.4	18	96	0	79	31	4	20	43	1.72
69669926--69670016	42	2.1	43	87	2	130	30	12	26	30	1.92
69669936--69670047	43	2.6	42	81	2	116	30	14	25	30	1.95
69670321--69670350	15	1.9	16	93	6	53	30	3	6	60	1.39
69676658--69676691	7	4.9	7	92	0	59	0	29	0	70	0.87
69687037--69687246	103	2.0	103	87	3	298	35	17	18	28	1.94
69687039--69687258	27	8.3	27	82	6	245	36	16	19	27	1.93
69703443--69703680	27	8.8	27	93	0	368	25	23	19	31	1.98
69703701--69703765	27	2.4	27	86	0	94	38	9	26	26	1.86
69705817--69705855	12	3.2	12	92	7	62	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69706522--69706558	19	1.9	19	100	0	74	40	5	16	37	1.71
69711751--69711849	49	2.0	49	98	0	189	37	19	14	29	1.91
69712147--69712317	48	3.6	47	79	9	184	27	26	19	26	1.99
69712306--69712337	11	2.9	11	95	0	55	21	28	12	37	1.90
69712357--69712541	48	3.9	48	81	5	230	28	30	16	24	1.96
69712163--69712483	166	1.9	165	89	1	500	26	27	18	26	1.98
69712328--69712532	96	2.1	96	89	1	313	27	29	17	25	1.98
69712465--69712611	50	3.0	50	91	5	221	29	27	17	25	1.97
69722603--69722655	21	2.5	21	90	0	88	54	16	18	9	1.69
69737246--69737277	11	2.9	11	100	0	64	43	0	18	37	1.51
69742329--69742379	18	2.7	19	79	11	61	47	17	1	33	1.59
69742904--69742938	15	2.3	15	90	0	52	42	14	17	25	1.86
69749349--69749420	33	2.2	33	97	0	135	8	31	13	45	1.74
69749361--69749431	33	2.2	33	84	5	90	12	30	15	40	1.85
69749671--69749727	28	2.0	28	96	0	105	38	3	5	52	1.41
69751117--69751167	20	2.5	20	80	0	57	11	25	21	41	1.87
69752162--69752215	24	2.2	24	96	0	99	29	24	12	33	1.92
69754754--69754803	24	2.1	24	100	0	100	38	8	12	42	1.71
69755928--69755964	12	3.1	12	96	0	65	27	16	45	10	1.80
69759442--69759542	32	3.2	32	77	2	96	31	22	20	24	1.98
69759611--69759675	22	3.0	22	76	0	67	30	20	26	23	1.98
69760054--69760105	27	1.9	27	92	0	86	25	25	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69760090--69760349	27	9.7	26	76	7	191	28	8	23	40	1.83
69760090--69760341	54	4.7	54	79	4	258	28	8	22	39	1.84
69760116--69760355	80	3.0	80	82	4	288	30	7	22	40	1.81
69763502--69763972	238	2.0	238	94	0	834	32	11	20	35	1.88
69769967--69770060	41	2.3	41	96	0	170	25	43	19	11	1.84
69773300--69773525	40	5.7	40	84	4	305	23	20	30	25	1.99
69773299--69773518	80	2.8	80	95	0	388	24	20	29	25	1.99
69784021--69784145	43	2.9	43	82	4	128	34	24	15	25	1.94
69791856--69791880	13	1.9	13	100	0	50	48	0	8	44	1.32
69797414--69797455	21	2.0	21	100	0	84	38	23	0	38	1.55
69799637--69799732	27	3.4	28	88	5	124	26	12	28	33	1.92
69799665--69799748	27	3.0	27	85	5	87	29	10	25	34	1.90
69805942--69806115	43	4.1	43	77	12	151	24	16	25	33	1.96
69811631--69811713	40	2.1	40	100	0	166	34	15	14	34	1.88
69813594--69813750	44	3.7	42	76	9	138	26	17	23	33	1.96
69829563--69829756	40	4.9	40	93	0	318	22	27	22	26	1.99
69829536--69829756	80	2.8	80	88	2	322	21	27	23	27	1.99
69842963--69843089	43	3.0	42	77	10	118	24	18	25	32	1.97
69847429--69847479	13	4.2	12	78	9	50	29	13	1	54	1.50
69855695--69855848	27	5.7	27	87	4	197	25	25	18	30	1.98
69855844--69855914	26	2.7	27	86	6	92	39	14	11	35	1.81
69855839--69856111	27	10.2	26	78	7	190	30	9	21	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69855904--69856110	54	3.8	54	82	6	258	29	8	22	39	1.83
69855920--69856104	81	2.3	81	86	1	255	29	7	22	41	1.80
69862389--69862560	67	2.6	66	81	7	170	31	16	29	22	1.96
69862413--69862595	67	2.8	64	78	8	201	28	16	31	23	1.96
69865257--69865481	40	5.6	40	83	4	274	24	27	23	25	2.00
69873500--69873724	40	5.6	40	88	3	328	24	23	26	25	2.00
69878064--69878142	29	2.7	29	86	5	106	27	32	15	24	1.95
69878124--69878226	43	2.4	43	100	0	206	26	35	15	22	1.94
69880091--69880169	37	2.1	37	88	4	115	25	30	18	25	1.98
69880288--69880822	47	11.4	47	95	0	921	29	29	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345