Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  146  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49365450--49365510
30
2.0
30
83
0
77
32
22
6
37
1.80
49373060--49373283
40
5.6
40
91
3
328
24
22
26
26
2.00
49374966--49374993
13
2.2
13
100
0
56
78
7
14
0
0.95
49375794--49375833
2
20.0
2
100
0
80
0
0
50
50
1.00
49376403--49376452
21
2.3
21
89
6
73
14
26
26
34
1.94
49376414--49376477
21
3.0
21
86
0
83
14
23
26
35
1.93
49376639--49376679
19
2.2
19
87
12
59
46
0
24
29
1.53
49389720--49389784
18
3.6
18
80
0
76
43
15
21
20
1.88
49390097--49390202
27
4.0
27
82
1
142
43
16
14
25
1.86
49390095--49390205
54
2.1
53
87
1
159
43
17
13
26
1.86
49390319--49390352
18
1.9
17
88
5
50
14
38
26
20
1.91
49397665--49397748
43
2.0
43
90
0
132
28
29
21
20
1.98
49408444--49408535
43
2.1
43
82
7
107
26
27
18
28
1.98
49422237--49422407
48
3.6
48
78
7
204
26
19
27
26
1.99
49422188--49422416
97
2.4
97
87
2
318
27
19
26
26
1.99
49440357--49440391
18
1.9
18
94
0
61
14
40
8
37
1.76
49444093--49444317
40
5.7
40
87
5
305
24
22
27
25
2.00
49444093--49444350
119
2.2
119
82
6
301
25
21
27
25
2.00
49449958--49450174
40
5.6
39
82
10
223
24
21
28
25
1.99
49449958--49450174
75
2.8
77
82
10
262
24
21
28
25
1.99
49449962--49450174
115
1.9
115
84
5
288
25
21
27
26
1.99
49449966--49450206
40
6.2
40
80
10
209
25
21
26
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49454102--49454301
15
13.6
14
64
16
57
78
9
2
10
1.07
49454102--49454212
23
4.5
24
69
20
70
80
9
2
8
1.00
49454105--49454300
16
12.1
15
68
22
96
77
9
2
10
1.08
49454180--49454302
50
2.5
46
78
15
124
76
11
1
10
1.09
49454341--49454542
14
13.5
14
68
18
77
78
7
4
8
1.07
49454344--49454452
15
7.6
15
71
16
56
81
8
1
8
0.94
49454402--49454452
21
2.5
19
82
14
66
88
1
3
5
0.69
49454415--49454502
25
3.5
25
75
13
81
81
3
4
10
0.94
49454470--49454542
21
3.2
23
73
9
69
80
8
5
5
1.00
49454419--49454502
26
3.4
24
75
13
71
80
3
4
10
0.97
49454609--49454659
16
3.0
16
81
13
66
84
7
0
7
0.78
49454614--49454703
26
3.2
28
75
12
78
76
10
2
11
1.10
49454736--49454778
1
43.0
1
85
0
59
93
4
0
2
0.43
49454736--49454778
19
2.3
19
95
0
77
93
4
0
2
0.43
49454736--49454785
12
4.2
12
87
10
59
90
4
0
6
0.57
49454826--49454859
16
2.1
16
89
10
52
88
11
0
0
0.52
49454814--49454857
13
3.4
13
81
12
54
81
15
0
2
0.78
49456855--49456908
20
2.7
20
82
0
63
24
20
18
37
1.94
49456855--49456928
30
2.5
30
86
8
98
21
20
18
39
1.93
49456855--49456919
20
3.2
20
71
16
53
23
21
16
38
1.93
49461224--49461270
23
2.1
23
84
7
62
51
12
4
31
1.59
49469323--49469357
18
1.9
18
88
11
54
22
20
0
57
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49470284--49470322
11
3.6
10
89
10
51
12
0
2
84
0.72
49470301--49470329
12
2.3
13
94
5
51
17
3
6
72
1.21
49470740--49470802
21
3.0
21
86
6
83
31
3
31
33
1.74
49470751--49470783
11
3.1
11
82
8
50
33
0
36
30
1.58
49473807--49473860
20
2.7
20
82
0
63
24
20
18
37
1.94
49473807--49473880
30
2.5
30
86
8
98
21
20
18
39
1.93
49473807--49473871
20
3.2
20
71
16
53
23
21
16
38
1.93
49474485--49474524
20
1.9
20
85
10
53
82
2
5
10
0.91
49475438--49475472
18
1.9
18
88
11
54
57
0
20
22
1.41
49478967--49479013
20
2.3
20
85
0
67
29
36
12
21
1.91
49480552--49480583
8
3.9
8
92
8
55
87
0
9
3
0.64
49481610--49481715
48
2.2
47
85
9
135
59
1
24
14
1.45
49483385--49483431
20
2.3
20
85
0
67
29
36
12
21
1.91
49485362--49485479
55
2.1
55
84
6
159
25
22
13
38
1.90
49486071--49486125
20
2.8
20
80
0
65
27
18
29
25
1.98
49491190--49491268
37
2.1
37
88
0
113
26
31
17
24
1.97
49491387--49491674
47
6.1
47
93
3
474
28
30
9
31
1.88
49491387--49491674
96
3.1
96
92
4
473
28
30
9
31
1.88
49491387--49491674
143
2.1
138
92
3
468
28
30
9
31
1.88
49495147--49495342
40
4.9
40
84
3
243
25
28
21
25
1.99
49495317--49495460
40
3.6
40
81
8
168
23
27
23
25
2.00
49495147--49495380
79
2.9
78
77
8
240
24
28
21
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49495766--49495844
29
2.7
29
86
5
106
27
32
15
24
1.95
49495826--49495966
42
3.4
43
91
6
238
26
34
15
23
1.94
49497808--49497885
37
2.1
36
88
2
111
25
32
17
24
1.97
49498003--49498505
47
10.7
47
95
4
865
30
29
8
31
1.87
49513812--49513854
19
2.3
19
100
0
86
39
34
0
25
1.56
49514591--49514620
15
2.1
14
93
6
51
50
16
20
13
1.78
49515143--49515174
13
2.5
13
100
0
64
40
21
6
31
1.78
49522932--49522974
20
2.2
20
82
0
50
44
18
4
32
1.71
49523995--49524028
8
4.2
8
84
0
50
5
38
0
55
1.24
49529016--49529200
79
2.3
82
83
7
229
24
27
22
24
2.00
49528997--49529200
40
5.1
40
81
8
229
24
27
22
25
2.00
49535252--49535341
40
2.2
40
84
3
119
30
25
17
26
1.98
49547599--49547677
29
2.7
29
86
5
106
27
32
15
24
1.95
49555694--49555772
29
2.7
29
86
5
106
27
32
15
24
1.95
49562532--49562611
34
2.4
34
82
4
90
22
23
25
28
1.99
49563183--49563286
24
4.2
24
74
19
81
35
17
22
25
1.95
49564263--49564299
17
2.2
17
90
0
56
40
10
5
43
1.63
49566275--49566368
43
2.2
41
88
3
134
27
32
25
13
1.94
49567373--49567482
49
2.3
49
90
1
177
34
24
15
25
1.95
49567464--49567549
42
2.0
43
81
2
102
27
24
17
30
1.97
49571465--49571777
49
6.6
49
73
12
185
23
30
19
26
1.98
49571609--49571780
94
1.8
95
86
6
251
22
31
19
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49572437--49572487
20
2.7
18
82
14
59
37
21
0
41
1.54
49578794--49578942
40
3.7
40
87
5
212
27
26
21
24
1.99
49583836--49583960
42
3.0
42
78
10
146
28
24
18
28
1.98
49589576--49589796
40
5.6
40
93
2
340
26
28
22
23
1.99
49589543--49589796
79
3.2
77
87
7
334
25
27
22
24
1.99
49597625--49597853
40
5.8
40
93
2
347
26
27
22
23
1.99
49597599--49597853
79
3.2
78
89
6
347
26
27
22
23
2.00
49600088--49600191
39
2.6
40
90
1
174
27
23
24
25
2.00
49600052--49600214
40
4.1
40
81
5
163
26
22
25
25
2.00
49609979--49610062
22
3.9
22
74
13
77
27
13
5
53
1.62
49609979--49610060
41
2.0
42
90
7
132
28
13
6
52
1.64
49614536--49614795
129
2.0
129
99
0
511
34
13
6
45
1.70
49632168--49632223
28
2.0
28
100
0
112
32
10
21
35
1.88
49632214--49632253
21
1.9
21
94
0
71
62
7
22
7
1.47
49632909--49632981
36
2.0
36
100
0
146
58
8
10
21
1.58
49641912--49641949
16
2.4
16
95
0
67
34
5
18
42
1.73
49651287--49651323
2
18.5
2
94
0
65
0
45
2
51
1.15
49668249--49668280
13
2.5
13
94
0
55
31
21
3
43
1.68
49669779--49669845
33
2.0
33
97
0
125
38
8
19
32
1.83
49671828--49671903
23
3.3
22
75
15
82
19
14
18
47
1.83
49675780--49675879
40
2.5
40
88
3
148
29
16
21
34
1.94
49675780--49675960
40
4.5
40
79
5
141
28
14
23
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49678840--49678880
21
1.9
22
85
5
57
43
4
4
46
1.46
49681232--49681278
21
2.2
22
92
3
78
21
38
19
21
1.94
49684896--49684951
10
5.5
10
82
2
67
62
1
3
32
1.23
49690662--49690846
98
1.9
98
81
5
223
29
20
27
23
1.99
49690577--49690775
46
4.2
48
73
10
133
30
18
28
23
1.97
49702927--49702967
19
2.2
19
86
8
57
34
36
0
29
1.58
49708743--49708796
7
7.7
7
83
8
56
50
25
0
24
1.50
49708743--49708781
21
1.9
20
94
5
69
53
17
0
28
1.44
49708739--49708796
21
2.8
21
74
10
64
48
29
0
22
1.51
49715675--49715895
40
5.6
40
81
1
212
25
23
26
24
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345