Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  144  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48742983--48743023
12
3.4
12
86
0
64
53
17
9
19
1.70
48742983--48743029
18
2.6
18
89
0
67
51
17
12
19
1.77
48746072--48746126
27
2.0
27
100
0
110
32
18
3
45
1.67
48749567--48749615
17
2.8
18
71
6
55
36
16
14
32
1.89
48749780--48749817
6
6.5
6
81
6
51
47
15
18
18
1.83
48751054--48751087
12
2.8
12
83
16
52
52
5
0
41
1.25
48752690--48752720
14
2.2
14
94
0
53
22
0
0
77
0.77
48757141--48757171
9
3.3
9
91
8
53
22
0
0
77
0.77
48762984--48763139
43
3.7
41
71
14
120
25
17
28
28
1.98
48769474--48769697
40
5.7
40
86
6
296
25
27
22
24
2.00
48769474--48769697
79
2.8
79
84
7
292
25
27
22
24
2.00
48777431--48777693
40
6.6
40
87
3
316
26
28
20
24
1.99
48787499--48787532
11
3.1
11
84
16
52
79
0
2
17
0.86
48798027--48798132
51
2.1
51
85
3
142
33
30
14
22
1.93
48804974--48805017
13
3.3
13
80
3
52
47
0
4
47
1.22
48805338--48805375
20
1.9
19
89
5
58
42
5
7
44
1.56
48809924--48810823
48
18.2
48
93
4
1408
36
5
26
31
1.80
48809924--48810823
100
9.1
96
93
4
1408
36
5
26
31
1.80
48810972--48811078
37
2.9
37
92
0
169
23
16
31
28
1.96
48824583--48824755
46
3.7
46
80
13
219
29
28
21
20
1.98
48828846--48828918
26
2.8
26
82
0
83
16
13
26
43
1.85
48831907--48832121
47
4.6
47
92
0
322
33
7
30
28
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48833533--48833844
40
7.8
40
91
0
480
23
20
28
26
1.99
48835421--48835599
40
4.5
40
83
5
150
25
26
20
27
1.99
48835453--48835599
41
3.7
40
86
7
174
25
26
21
26
2.00
48843327--48843550
40
5.7
40
87
4
278
26
26
21
25
2.00
48846448--48846709
47
5.6
47
93
0
416
33
8
29
29
1.86
48848395--48848441
18
2.5
20
76
20
55
40
2
0
57
1.11
48852146--48852236
46
2.0
46
86
0
128
27
31
6
34
1.83
48852250--48852541
47
6.2
47
88
0
413
26
27
11
34
1.91
48852216--48852541
94
3.5
94
88
0
438
26
28
11
34
1.90
48855389--48855490
29
3.6
29
80
7
118
29
31
16
22
1.96
48855365--48855522
57
2.8
57
90
1
228
31
29
17
22
1.96
48855365--48855518
28
5.4
27
75
10
130
31
29
17
22
1.96
48855530--48855963
40
10.9
40
93
0
701
25
27
23
24
2.00
48855608--48855674
23
3.2
23
60
24
56
23
25
23
26
2.00
48857402--48857492
46
2.0
46
86
0
128
27
31
6
34
1.83
48857506--48857797
47
6.2
47
88
0
413
26
27
11
34
1.91
48857472--48857797
94
3.5
94
88
0
438
26
28
11
34
1.90
48860973--48861006
5
6.8
5
100
0
68
82
0
0
17
0.67
48864734--48864892
41
3.7
42
75
12
128
32
27
15
24
1.95
48866488--48866671
78
2.3
81
81
8
209
24
23
27
24
2.00
48866488--48866671
40
4.7
40
80
8
207
24
23
27
24
2.00
48866540--48866704
79
2.1
78
80
7
183
26
21
27
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48875486--48875772
143
2.0
143
98
0
556
38
19
8
34
1.81
48876068--48876225
41
3.7
41
80
5
145
29
29
17
24
1.97
48876538--48876567
15
2.0
15
93
0
51
50
13
0
36
1.42
48886878--48886951
38
1.9
38
100
0
148
31
16
27
25
1.96
48887016--48887182
47
3.6
47
75
13
182
22
17
29
31
1.96
48887061--48887235
46
3.8
46
75
10
176
20
19
28
31
1.97
48887020--48887228
93
2.2
93
91
0
328
21
18
29
31
1.96
48896328--48896460
66
2.0
66
94
0
230
36
9
21
31
1.86
48899740--48899924
40
4.6
41
80
7
204
25
22
27
24
2.00
48899793--48899957
79
2.1
79
83
6
201
27
21
26
24
1.99
48901783--48901882
37
2.7
37
95
0
173
24
34
19
23
1.97
48902026--48902267
48
5.0
48
96
0
430
30
28
6
34
1.82
48909387--48909485
29
3.4
29
85
1
128
29
30
15
25
1.95
48909691--48909725
16
2.2
16
89
0
52
8
20
20
51
1.73
48909691--48909741
24
2.1
24
92
0
84
7
19
21
50
1.72
48913921--48914033
29
4.0
29
80
6
124
29
29
14
27
1.95
48915537--48915568
16
2.0
16
93
0
55
15
6
28
50
1.68
48929096--48929209
27
4.3
26
76
13
115
36
21
21
19
1.95
48935814--48935921
37
2.9
37
95
0
189
25
31
19
23
1.98
48937328--48937552
79
2.8
78
79
11
251
25
26
21
26
1.99
48937328--48937552
40
5.6
39
84
7
235
25
26
21
26
1.99
48937328--48937549
119
1.9
120
81
10
276
25
27
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48939207--48939389
48
3.8
48
91
2
314
31
26
6
35
1.82
48939359--48939552
47
4.1
47
89
1
273
27
28
10
32
1.90
48944139--48944252
27
4.2
27
76
15
94
36
21
21
21
1.95
48944163--48944253
28
3.3
28
81
4
96
37
21
19
20
1.95
48949595--48949696
43
2.4
41
82
11
109
25
19
24
30
1.98
48960177--48960214
20
1.9
20
89
10
60
39
10
7
42
1.69
48972490--48972555
6
10.7
6
90
6
78
68
1
6
24
1.21
48974221--48974263
22
2.0
22
95
0
77
30
32
27
9
1.88
48974514--48974569
27
2.1
27
83
6
69
26
12
25
35
1.91
48975333--48975526
100
1.9
99
93
1
334
36
36
7
19
1.81
48983017--48983238
40
5.6
39
86
6
256
24
22
27
25
2.00
48991484--48991531
12
3.8
13
86
10
55
66
0
33
0
0.92
48991489--48991531
3
15.0
3
81
18
56
65
0
34
0
0.93
48998700--48998876
27
6.6
27
82
5
196
26
15
28
29
1.96
48998701--48998855
82
1.9
81
86
5
224
26
15
28
29
1.96
48998697--48998876
81
2.2
81
82
3
220
26
15
27
30
1.96
49002722--49002771
20
2.6
19
75
25
59
44
10
20
26
1.82
49005771--49005821
19
2.7
19
93
0
84
37
11
13
37
1.82
49007264--49007366
34
3.1
34
83
6
95
27
23
22
27
1.99
49010550--49010587
14
2.6
15
83
8
51
18
0
2
78
0.86
49014649--49014700
24
2.2
24
82
6
61
44
9
30
15
1.78
49014658--49014708
24
2.1
24
85
0
66
47
5
27
19
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49019733--49019776
20
2.2
20
95
0
79
38
25
2
34
1.68
49024973--49025163
43
4.6
40
79
4
159
23
29
19
27
1.98
49025053--49025176
43
2.9
43
86
1
169
22
31
20
25
1.98
49027711--49027788
41
1.9
41
100
0
156
26
14
16
42
1.86
49030905--49031005
43
2.4
40
80
11
105
29
25
16
27
1.97
49031812--49031837
10
2.6
10
100
0
52
61
19
7
11
1.53
49033621--49033844
79
2.8
78
83
6
272
25
27
22
25
2.00
49033621--49033844
40
5.7
40
86
6
271
25
27
22
25
2.00
49041583--49041768
40
4.7
40
84
7
227
25
27
22
24
2.00
49041583--49041768
79
2.3
82
83
8
231
25
27
22
24
2.00
49048474--49048657
39
4.7
40
80
7
198
26
27
21
24
1.99
49048474--49048657
79
2.3
81
81
8
209
26
27
21
24
1.99
49051021--49051054
10
3.3
10
88
8
50
32
0
2
64
1.08
49054958--49054982
12
2.1
12
100
0
50
76
0
16
8
1.02
49056932--49056961
12
2.5
12
94
0
51
6
23
40
30
1.80
49057341--49057437
45
2.2
44
87
10
139
30
3
15
50
1.59
49074883--49074971
41
2.1
42
87
6
128
33
2
10
53
1.47
49076077--49076141
24
2.7
24
78
7
69
33
20
21
24
1.97
49082251--49082668
207
2.0
207
100
0
836
34
21
10
33
1.87
49082747--49082905
43
3.7
42
79
7
169
31
26
19
22
1.98
49082747--49082905
44
3.7
42
80
5
185
31
26
19
22
1.98
49082742--49082906
86
1.9
85
86
6
235
32
26
18
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49084191--49084321
35
3.7
35
85
0
172
29
3
31
35
1.75
49084191--49084345
35
4.5
35
85
0
168
28
3
32
35
1.73
49088399--49088545
42
3.5
42
86
8
194
21
21
24
32
1.98
49099536--49099742
29
7.1
29
73
7
132
22
27
13
37
1.91
49099533--49099617
30
2.9
29
83
1
107
17
30
16
35
1.92
49099606--49099735
58
2.2
59
81
6
149
25
26
9
39
1.86
49101045--49101157
26
4.3
26
76
5
84
38
19
11
30
1.87
49101096--49101157
26
2.3
26
88
2
88
38
16
12
32
1.86
49101138--49101740
27
22.3
27
84
3
649
27
22
9
40
1.84
49101745--49101939
54
3.6
54
82
3
223
37
17
18
26
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345