Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  336  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112022554--112022671
54
2.2
53
93
4
202
40
16
14
28
1.87
112022563--112022896
140
2.4
138
89
5
496
38
17
15
28
1.90
112022880--112022912
15
2.1
16
94
5
59
72
6
9
12
1.26
112022759--112023303
259
2.1
249
83
8
672
36
19
16
27
1.93
112022759--112023303
173
3.2
167
81
11
585
36
19
16
27
1.93
112023061--112023299
86
3.0
78
81
10
254
37
20
15
26
1.93
112024006--112024135
30
4.3
30
83
3
138
26
48
3
20
1.67
112024606--112024733
23
5.5
22
70
19
75
35
4
2
57
1.32
112024681--112024739
25
2.3
26
77
8
68
37
3
1
57
1.25
112024623--112024743
14
8.6
14
66
17
56
36
4
2
57
1.31
112024758--112024816
25
2.5
24
78
10
68
33
8
6
50
1.59
112024774--112024822
25
2.0
25
91
0
80
34
8
6
51
1.57
112024981--112025020
8
5.6
7
91
8
55
30
0
5
65
1.14
112024981--112025020
13
2.8
14
88
11
55
30
0
5
65
1.14
112024981--112025028
14
3.3
15
78
21
50
29
0
4
66
1.10
112024894--112025043
72
2.1
68
77
13
153
30
5
2
61
1.32
112026601--112026636
12
3.0
12
87
0
54
25
27
5
41
1.77
112026609--112026640
16
1.9
17
93
6
57
25
28
6
40
1.79
112034802--112035667
68
12.3
71
81
15
948
28
16
20
33
1.95
112034802--112035892
141
7.6
141
80
15
1128
28
17
20
33
1.95
112035436--112035812
77
5.0
77
78
19
368
27
18
19
34
1.95
112035579--112035822
73
3.1
83
82
17
315
27
19
18
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112035660--112035852
73
2.8
71
88
10
276
27
18
21
32
1.97
112035661--112035885
73
3.2
70
85
11
275
27
20
20
32
1.97
112035872--112035909
13
2.8
14
80
8
51
18
15
5
60
1.53
112035900--112035931
14
2.2
15
94
5
57
25
6
0
68
1.12
112036089--112036123
13
2.6
14
86
9
54
14
22
5
57
1.59
112036179--112036227
14
3.6
14
83
5
57
18
14
4
63
1.46
112036204--112036238
14
2.5
14
95
0
61
25
11
0
62
1.28
112036179--112036238
28
2.2
26
82
5
66
21
13
3
61
1.46
112037097--112037196
30
3.3
30
83
2
130
28
48
4
20
1.67
112037772--112037845
29
2.7
27
79
10
78
31
5
4
59
1.38
112038047--112038094
16
3.1
15
90
6
69
31
2
2
64
1.16
112038047--112038098
8
6.5
8
82
8
61
30
1
1
65
1.14
112050634--112050692
26
2.4
24
82
5
64
54
5
6
33
1.49
112050857--112050939
22
3.5
24
75
17
68
53
3
3
39
1.36
112051227--112051293
3
22.3
3
100
0
134
67
0
0
32
0.91
112051058--112051251
101
1.9
99
82
9
241
55
5
4
34
1.44
112051734--112051769
11
3.2
12
88
11
58
47
0
52
0
1.00
112051842--112051892
12
4.0
13
78
16
54
25
0
1
72
0.95
112051945--112051983
17
2.3
17
86
8
53
71
0
10
17
1.12
112055414--112055481
16
4.2
16
92
0
118
27
0
33
38
1.57
112055710--112055751
17
2.6
16
82
17
52
45
0
0
54
0.99
112055700--112056082
120
3.2
120
98
0
721
47
6
1
44
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112068441--112068489
24
2.0
24
100
0
98
55
12
28
4
1.55
112071467--112071496
3
10.0
3
100
0
60
33
0
0
66
0.92
112071674--112071738
21
3.1
21
80
6
62
35
4
4
55
1.41
112084471--112084879
74
5.5
74
83
5
472
29
18
21
31
1.96
112084467--112084879
149
2.8
148
84
5
525
29
18
20
31
1.96
112085736--112085780
3
15.0
3
100
0
90
33
0
0
66
0.92
112085957--112086021
21
3.1
21
80
6
62
35
4
4
55
1.41
112093610--112093693
26
3.2
25
91
6
132
36
23
4
34
1.76
112094244--112094572
129
2.6
128
84
5
396
36
20
17
26
1.94
112095613--112095675
31
2.0
31
82
11
76
60
4
3
31
1.33
112100798--112101664
434
2.0
434
98
0
1689
31
20
16
31
1.95
112104128--112104163
19
1.9
18
88
5
54
22
5
11
61
1.50
112108158--112108321
10
16.4
10
66
16
56
59
4
2
33
1.30
112108203--112108253
22
2.4
22
83
9
61
58
3
1
35
1.28
112108216--112108263
20
2.3
20
83
16
62
60
6
0
33
1.22
112108218--112108269
22
2.4
22
87
12
72
59
7
0
32
1.26
112108834--112108944
19
6.2
17
76
16
84
30
1
2
64
1.17
112108837--112108914
36
2.2
36
81
4
86
33
1
3
61
1.22
112121700--112121816
57
2.0
58
81
3
137
44
5
18
30
1.74
112129471--112129504
16
2.1
17
88
5
52
47
5
5
41
1.52
112130099--112130137
20
2.0
20
100
0
78
71
0
10
17
1.12
112144183--112144232
10
5.0
10
83
9
66
70
2
6
22
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112144867--112145049
95
1.9
96
88
1
278
33
26
13
26
1.93
112146244--112146294
5
10.4
5
80
19
63
80
0
1
17
0.81
112146240--112146293
9
5.8
9
85
12
65
79
0
1
18
0.82
112146244--112146294
14
3.5
14
80
17
59
80
0
1
17
0.81
112146237--112146296
16
3.6
16
80
14
68
78
0
1
20
0.84
112149255--112149288
18
1.9
18
94
5
61
58
5
8
26
1.51
112150017--112150066
10
5.0
10
83
9
66
70
2
6
22
1.20
112154069--112154123
25
2.2
24
90
3
83
27
14
20
38
1.91
112160225--112160488
132
2.0
133
85
0
359
28
23
19
28
1.98
112176548--112176676
61
2.1
62
83
1
170
22
23
26
27
1.99
112182721--112182772
26
2.0
27
92
7
90
23
3
11
61
1.46
112182727--112182781
26
2.2
25
86
3
74
23
7
10
58
1.57
112183558--112183606
22
2.0
25
85
14
68
63
14
2
20
1.40
112184273--112184315
16
2.8
16
82
3
52
39
23
4
32
1.75
112188993--112189026
16
2.1
17
88
5
52
38
0
2
58
1.13
112188993--112189081
17
5.1
16
72
24
65
35
3
1
59
1.21
112188950--112189104
54
2.9
53
75
15
133
32
4
1
61
1.24
112189018--112189061
20
2.0
21
83
12
54
34
2
0
63
1.07
112189002--112189061
3
19.0
3
74
16
50
35
1
1
61
1.16
112189032--112189078
20
2.3
21
82
13
55
34
6
0
59
1.23
112189823--112189856
17
2.1
17
88
5
52
23
8
8
58
1.56
112191958--112192005
16
3.1
16
81
3
62
43
25
2
29
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112196701--112196746
24
2.0
24
82
4
58
23
2
4
69
1.17
112199509--112199564
28
2.0
28
89
3
85
16
32
35
16
1.90
112201052--112201171
40
3.1
39
65
16
97
32
19
20
27
1.97
112201060--112201364
75
3.9
75
77
12
333
29
22
23
24
1.99
112201194--112201219
13
2.0
13
100
0
52
30
23
23
23
1.99
112201119--112201294
88
2.0
88
92
0
289
30
20
23
26
1.99
112201232--112201360
35
3.5
35
71
17
109
30
23
23
23
1.99
112201060--112201364
163
1.9
163
90
1
495
29
22
23
24
1.99
112202036--112202088
22
2.4
22
75
6
54
18
15
5
60
1.54
112202126--112202187
29
2.1
30
85
8
83
27
3
9
59
1.44
112210487--112210553
31
2.2
31
94
0
116
41
11
10
35
1.76
112212447--112212536
27
3.2
27
82
7
110
32
24
24
18
1.97
112212642--112212705
28
2.3
28
91
5
103
29
6
29
34
1.82
112216609--112216662
23
2.5
23
82
8
60
61
7
0
31
1.24
112216878--112216917
15
2.5
17
92
8
66
65
0
10
25
1.24
112216873--112216990
44
2.7
43
75
19
111
64
2
7
25
1.33
112216910--112216948
15
2.7
15
92
4
62
64
0
5
30
1.15
112216885--112216990
29
3.7
27
73
21
67
63
1
8
26
1.34
112220840--112222021
88
13.4
88
79
7
1013
23
23
19
33
1.97
112221696--112221796
50
2.0
50
90
0
157
24
17
20
36
1.94
112221461--112221873
138
3.1
132
86
4
578
23
21
20
34
1.97
112220933--112221966
44
23.5
44
61
13
196
23
22
19
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112221772--112222010
44
5.5
43
65
14
141
23
25
20
30
1.99
112221961--112222730
177
4.4
177
86
1
1076
27
21
18
32
1.97
112222358--112222444
44
2.0
45
82
11
108
25
22
16
35
1.94
112229588--112229633
15
2.9
15
83
6
56
69
0
6
23
1.11
112230858--112230916
32
1.9
30
86
6
82
35
5
5
54
1.45
112232599--112232631
16
2.1
16
88
11
50
60
12
6
21
1.53
112233864--112233893
15
1.9
16
93
6
53
10
3
33
53
1.51
112234220--112234302
43
1.9
44
85
2
114
25
27
16
30
1.97
112234265--112234811
205
2.7
205
90
0
853
28
21
18
30
1.97
112244724--112244769
18
2.8
18
84
15
64
0
30
41
28
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345