Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  120  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40215273--40215340
24
2.8
23
80
4
73
22
25
16
36
1.94
40216305--40216420
39
3.0
39
94
0
196
28
29
19
22
1.98
40221268--40221400
67
2.0
67
90
0
212
39
9
22
28
1.86
40229588--40229648
25
2.5
26
80
17
76
57
1
6
34
1.34
40230301--40230358
28
2.1
28
83
0
71
50
10
5
34
1.59
40230660--40230711
26
2.0
26
96
0
95
23
9
15
51
1.72
40240628--40240832
40
5.2
40
79
9
215
25
22
25
25
2.00
40240612--40240832
80
2.8
80
84
4
270
25
22
25
26
2.00
40241060--40241101
22
1.9
22
85
9
59
33
9
14
42
1.78
40242188--40242280
24
3.8
23
76
13
80
24
23
19
32
1.98
40243972--40244045
29
2.6
29
86
4
96
25
31
16
27
1.96
40244845--40244880
15
2.4
15
90
0
54
41
27
5
25
1.77
40248852--40248888
18
2.1
18
89
0
56
29
13
0
56
1.37
40262255--40262614
27
13.6
27
86
5
439
32
13
15
38
1.87
40262268--40262610
183
1.9
183
88
2
519
31
13
15
39
1.86
40262473--40262643
80
2.1
81
80
5
186
36
16
14
32
1.89
40276680--40276793
48
2.4
48
85
2
151
30
21
13
34
1.92
40276795--40276819
5
5.0
5
100
0
50
0
40
20
40
1.52
40280947--40281164
40
5.5
40
89
2
298
24
28
23
22
1.99
40282421--40282450
10
2.9
10
95
5
51
0
20
0
80
0.72
40284253--40284372
48
2.5
48
83
2
145
28
21
15
35
1.93
40284368--40284392
5
5.0
5
100
0
50
0
40
20
40
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40288535--40288654
48
2.6
46
81
2
123
28
20
14
36
1.92
40294918--40295073
43
3.6
43
76
9
147
29
22
17
30
1.96
40303177--40303208
15
2.0
17
88
11
50
25
0
31
43
1.55
40304733--40304777
11
3.9
11
81
18
56
60
17
2
20
1.47
40314561--40314682
46
2.6
47
84
5
147
26
22
14
36
1.93
40317687--40317718
12
2.5
13
90
10
57
37
15
0
46
1.46
40318069--40318124
21
2.7
21
75
5
60
35
25
21
17
1.95
40319365--40319404
21
2.0
20
85
14
55
0
15
5
80
0.88
40319876--40319905
11
2.8
11
95
5
53
53
0
0
46
1.00
40324272--40324313
21
2.0
21
90
0
66
66
0
7
26
1.17
40326182--40326221
20
2.0
21
90
5
64
40
5
0
55
1.22
40330646--40330689
21
2.1
21
95
0
79
27
25
13
34
1.93
40333256--40333293
12
3.2
12
81
7
51
26
2
0
71
1.00
40341737--40341855
62
1.9
62
94
0
211
34
5
27
32
1.79
40343518--40343648
50
2.6
50
84
5
169
25
29
18
26
1.98
40343577--40343693
48
2.4
50
81
5
132
26
33
13
26
1.94
40348827--40349008
40
4.6
40
89
1
249
25
29
21
23
1.99
40348827--40349009
79
2.3
80
87
0
251
25
28
22
22
1.99
40348827--40349049
40
5.6
39
81
6
191
26
29
21
22
1.99
40354507--40354868
48
7.6
47
74
11
237
24
28
19
27
1.98
40356842--40356929
30
2.9
30
89
0
131
13
30
34
21
1.92
40358208--40358339
50
2.6
51
85
3
185
34
15
12
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40359859--40359990
50
2.6
52
85
6
189
37
12
15
34
1.86
40364383--40364433
20
2.6
20
90
3
86
58
0
15
25
1.37
40365313--40365358
14
3.4
14
76
11
51
73
0
17
8
1.07
40367245--40367363
50
2.3
52
88
5
172
33
16
12
36
1.87
40387296--40387363
16
4.0
17
74
12
68
47
20
0
32
1.51
40387286--40387358
35
2.1
35
100
0
146
49
20
0
30
1.49
40387285--40387341
16
3.2
18
71
14
64
52
19
0
28
1.46
40387304--40387363
17
3.5
17
73
13
68
46
21
0
31
1.52
40388718--40388796
42
1.9
42
86
2
115
34
26
13
25
1.94
40388721--40388906
40
4.6
40
80
6
187
33
26
14
24
1.94
40388719--40388906
81
2.3
80
82
4
216
33
27
14
25
1.94
40389100--40389157
31
1.9
30
93
6
100
58
5
0
36
1.20
40392682--40392756
37
2.0
37
97
0
141
50
16
16
17
1.78
40393791--40393904
57
2.0
57
82
0
138
30
28
21
20
1.98
40401458--40401505
22
2.2
22
85
3
62
31
4
2
62
1.26
40403680--40403739
2
30.5
2
83
3
77
46
3
3
46
1.35
40403684--40403741
16
3.6
16
95
0
98
44
3
5
46
1.42
40403883--40403952
2
35.5
2
79
2
70
42
2
5
48
1.41
40403543--40403940
203
2.0
201
92
1
661
32
20
14
33
1.92
40405663--40405769
52
2.1
52
100
0
214
34
13
3
48
1.60
40420119--40420144
13
2.0
13
100
0
52
38
30
7
23
1.83
40432237--40433422
597
2.0
583
82
5
1436
34
17
13
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40433680--40433783
52
2.0
52
100
0
208
44
11
9
34
1.73
40440711--40440749
16
2.4
16
91
4
60
58
15
0
25
1.37
40444074--40444147
38
1.9
38
91
0
121
20
16
22
40
1.91
40444946--40444983
13
3.0
12
85
14
58
26
47
26
0
1.52
40451915--40451957
17
2.5
17
96
0
77
25
30
32
11
1.91
40452588--40452613
6
4.3
6
100
0
52
19
15
15
50
1.79
40456843--40456917
38
2.0
38
94
0
132
50
5
9
34
1.57
40457744--40457804
29
2.1
30
96
3
115
40
9
22
26
1.85
40458027--40458120
47
2.0
47
97
0
179
47
17
10
24
1.78
40459072--40459159
47
2.0
45
86
8
126
57
15
19
6
1.60
40460068--40460120
26
2.0
26
100
0
106
47
11
3
37
1.58
40461417--40461574
80
2.0
78
88
4
237
37
13
9
39
1.77
40462305--40462333
3
10.0
3
92
7
51
65
0
0
34
0.93
40463896--40463927
12
2.7
12
100
0
64
18
18
31
31
1.95
40469587--40469620
18
1.9
18
88
5
52
64
5
0
29
1.17
40475040--40475107
34
2.0
34
94
0
118
55
1
16
26
1.49
40482806--40482861
28
2.0
28
100
0
112
21
25
21
32
1.98
40484790--40484834
22
2.0
23
82
4
56
68
4
2
24
1.19
40485745--40485795
26
2.0
26
84
7
68
35
0
1
62
1.06
40486395--40486434
21
1.9
21
85
10
55
50
0
0
50
1.00
40486965--40487015
15
3.5
15
79
15
70
33
0
1
64
1.05
40486991--40487028
20
1.9
20
89
10
60
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40487127--40487196
34
2.1
34
91
0
113
52
0
4
42
1.20
40487127--40487172
18
2.8
16
84
12
65
54
0
0
45
0.99
40490779--40490898
58
2.1
58
90
3
188
26
11
30
31
1.92
40496459--40496500
22
1.9
22
90
0
66
76
7
16
0
1.00
40499264--40499303
21
1.9
21
84
0
53
27
32
17
22
1.96
40500808--40500837
12
2.5
12
94
0
51
43
6
6
43
1.57
40503656--40503710
28
2.0
28
96
0
101
36
10
23
29
1.89
40503656--40503728
28
2.6
27
85
10
94
36
9
24
28
1.87
40506485--40506578
46
2.0
46
89
0
143
42
5
14
37
1.69
40507593--40507661
35
2.0
34
86
11
95
49
7
5
37
1.55
40508411--40508479
34
2.0
34
97
0
129
50
14
21
13
1.76
40512301--40512390
23
3.8
24
85
5
121
17
22
21
38
1.93
40512301--40512390
47
1.9
47
84
4
119
17
22
21
38
1.93
40512298--40512426
23
5.5
23
81
9
111
23
20
18
37
1.94
40516718--40516850
40
3.3
40
75
4
108
34
22
16
26
1.95
40519496--40519546
19
2.8
18
69
16
50
58
15
0
25
1.37
40523965--40524028
22
2.9
23
76
9
60
23
0
25
51
1.48
40525159--40525822
330
2.0
333
93
1
1136
25
15
15
43
1.86
40529541--40529587
19
2.5
19
78
0
58
19
2
4
74
1.09
40529513--40529589
6
12.5
6
71
5
55
22
3
2
71
1.15
40529848--40529961
43
2.7
43
83
2
140
22
13
28
35
1.92
40533912--40533958
21
2.2
21
85
7
60
44
0
4
51
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40538613--40538881
46
5.8
46
79
5
299
21
20
30
27
1.98
40538609--40538827
47
4.7
47
79
5
239
21
21
30
26
1.98
40538609--40538873
93
2.8
93
95
0
476
21
21
30
27
1.98
40541791--40541859
15
4.6
15
83
0
84
11
17
13
57
1.64
40541782--40541869
30
3.0
30
81
8
99
10
17
15
56
1.66
40544244--40544416
46
3.8
44
81
7
204
20
21
30
27
1.98
40554536--40554768
38
6.0
38
88
2
277
32
26
20
21
1.97
40554541--40554768
114
2.0
118
85
5
313
32
26
20
21
1.98
40558547--40558702
43
3.7
43
71
9
113
25
15
27
32
1.95
40560023--40560127
50
2.1
50
100
0
210
40
7
13
39
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345