genome.fa.s6.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  98  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32278736--32278826	44	2.1	44	100	0	182	34	21	10	32	1.89
32286473--32286534	19	3.2	19	95	4	106	37	9	17	35	1.83
32293605--32293768	42	3.9	42	79	6	179	29	12	24	33	1.92
32293614--32293775	85	1.9	84	85	1	225	29	12	25	33	1.92
32296872--32296942	35	2.0	35	100	0	142	29	11	19	39	1.87
32297542--32297761	48	4.8	48	75	12	185	26	18	26	28	1.98
32297844--32297887	19	2.2	20	84	11	56	36	2	29	31	1.70
32306416--32306548	39	3.4	39	93	0	221	28	3	22	45	1.70
32312688--32313041	38	9.3	38	90	1	537	29	25	23	21	1.99
32312687--32313041	154	2.3	153	91	2	561	29	25	23	21	1.99
32318796--32318869	27	2.7	28	79	8	80	25	13	33	27	1.93
32323473--32323545	27	2.7	27	84	2	92	24	12	35	27	1.91
32328149--32328221	27	2.7	27	84	2	92	24	12	35	27	1.91
32333066--32333197	49	2.8	47	82	8	151	22	28	18	30	1.98
32339484--32339524	22	1.9	21	85	5	55	21	26	39	12	1.89
32340627--32340803	99	1.8	96	85	8	250	24	29	16	29	1.96
32345739--32345781	10	4.1	10	82	11	50	37	0	4	58	1.19
32345738--32345781	22	2.0	22	90	0	70	38	0	4	56	1.20
32356318--32356539	40	5.6	40	90	1	340	22	22	26	28	1.99
32364895--32365116	40	5.6	40	91	1	349	22	23	27	27	1.99
32379124--32379260	60	2.3	59	85	8	170	28	20	25	25	1.99
32382925--32383141	39	5.5	39	88	2	285	18	21	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32385199--32385262	32	2.0	32	96	0	119	34	26	12	26	1.92
32388735--32389017	48	5.9	48	88	4	383	26	28	16	28	1.97
32388702--32389017	144	2.2	144	85	3	422	26	28	16	28	1.97
32390273--32390593	48	6.6	48	77	2	153	26	29	19	24	1.98
32390273--32390593	144	2.2	145	81	5	355	26	29	19	24	1.98
32390327--32390608	48	5.9	48	82	3	282	29	29	17	23	1.97
32390782--32390843	31	2.0	31	100	0	124	35	22	12	29	1.91
32393260--32393327	15	4.4	15	71	17	50	54	13	16	16	1.71
32397008--32397147	48	2.9	48	84	2	174	24	27	20	27	1.99
32398804--32398871	32	2.1	34	86	5	95	32	0	1	66	1.01
32399049--32399187	44	3.2	44	66	25	125	32	9	11	46	1.72
32398997--32399283	84	3.4	84	87	1	364	30	9	11	48	1.72
32404147--32404362	46	4.6	46	77	6	184	26	17	30	25	1.97
32407828--32407865	16	2.4	16	86	4	51	23	15	15	44	1.85
32420161--32420267	48	2.2	48	83	3	126	25	16	32	25	1.96
32422392--32422477	32	2.6	33	83	10	113	32	0	0	67	0.91
32422398--32422476	12	6.7	12	83	9	83	30	0	0	69	0.89
32422398--32422476	18	4.4	18	78	12	83	30	0	0	69	0.89
32422828--32422860	13	2.4	14	85	10	50	45	0	12	42	1.41
32422828--32422867	20	2.0	21	90	5	64	45	0	12	42	1.42
32422828--32422860	7	4.9	7	85	7	50	45	0	12	42	1.41
32424301--32424590	145	2.0	145	100	0	580	26	17	11	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32430389--32430499	43	2.6	42	85	2	150	29	25	21	23	1.99
32433977--32434146	48	3.6	46	80	9	173	28	19	27	24	1.99
32433977--32434281	48	6.4	45	72	15	165	27	20	27	25	1.99
32434164--32434275	49	2.3	49	88	0	161	28	22	27	21	1.99
32440772--32440799	12	2.3	12	100	0	56	85	0	0	14	0.59
32440870--32440914	20	2.3	19	84	3	54	62	2	4	31	1.27
32445706--32445744	3	13.0	3	94	0	69	0	35	0	64	0.94
32449173--32449214	22	1.9	22	85	9	59	40	4	0	54	1.21
32449817--32449902	4	21.8	4	95	2	156	25	0	25	48	1.51
32450457--32450590	25	5.3	26	81	5	127	23	14	26	35	1.93
32450457--32450668	50	4.2	50	73	7	153	26	14	25	33	1.94
32451861--32451921	29	2.1	29	100	0	122	14	21	3	60	1.48
32452153--32452229	32	2.4	32	82	4	102	45	6	18	29	1.74
32453589--32453653	30	2.2	30	97	0	121	18	35	27	18	1.94
32457515--32457672	43	3.7	43	78	7	162	31	24	15	27	1.96
32459388--32459464	40	1.9	40	86	5	111	32	25	14	27	1.94
32462641--32462748	26	4.2	26	95	0	198	31	6	25	36	1.82
32464342--32464482	27	5.2	27	83	11	182	17	24	23	34	1.96
32464339--32464482	54	2.7	54	94	2	245	17	24	23	34	1.96
32464342--32464500	81	2.0	80	84	8	207	18	24	22	34	1.96
32467655--32468057	47	8.6	47	96	0	698	33	8	29	29	1.86
32473952--32474059	26	4.2	26	93	0	189	30	6	25	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32475655--32475795	27	5.2	28	80	11	161	19	24	21	34	1.96
32475652--32475795	54	2.7	54	91	2	218	19	24	21	34	1.96
32475655--32475813	81	2.0	80	82	8	198	20	24	20	34	1.96
32482626--32482803	46	3.8	46	79	7	184	22	30	19	28	1.98
32482631--32482844	93	2.3	92	80	9	233	22	29	18	28	1.98
32490184--32490405	46	4.8	46	83	8	265	22	30	19	27	1.98
32490184--32490405	94	2.4	92	85	8	283	22	30	19	27	1.98
32495089--32495267	27	6.6	27	83	3	171	28	29	15	26	1.96
32495089--32495267	54	3.3	54	84	3	216	28	29	15	26	1.96
32503215--32503393	27	6.6	27	84	3	180	29	29	15	26	1.96
32503215--32503393	54	3.3	54	85	3	225	29	29	15	26	1.96
32508457--32508510	26	2.1	26	96	0	99	37	22	12	27	1.91
32508464--32508516	26	2.0	26	92	0	88	37	24	13	24	1.91
32520291--32520403	46	2.5	44	87	7	147	27	16	30	25	1.97
32520369--32520509	48	2.8	50	82	6	153	27	17	29	25	1.97
32520379--32520509	50	2.7	48	84	4	147	28	17	29	25	1.97
32525411--32525442	17	1.9	16	93	6	55	34	0	53	12	1.39
32529010--32529040	16	1.9	16	100	0	62	32	25	3	38	1.72
32542905--32543011	27	3.9	27	83	9	128	37	22	22	17	1.94
32544429--32544479	24	2.1	24	88	0	75	23	37	1	37	1.66
32548074--32548185	27	4.2	26	84	7	134	38	23	22	16	1.93
32548074--32548185	54	2.1	54	86	3	154	38	23	22	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32549375--32549425	24	2.1	24	92	7	86	21	39	3	35	1.72
32551795--32551829	18	2.0	18	88	5	54	77	5	17	0	0.96
32552083--32552121	19	2.1	19	100	0	78	43	5	20	30	1.73
32556563--32556752	43	4.4	43	78	9	192	25	14	28	31	1.95
32558864--32558973	27	4.1	27	80	10	120	37	22	23	16	1.94
32560366--32560435	24	2.9	24	95	2	122	27	37	2	32	1.72
32566650--32566761	27	4.1	27	82	10	131	37	22	25	15	1.93
32566650--32566761	54	2.1	54	86	3	154	37	22	25	15	1.93
32568178--32568248	24	3.0	24	93	0	115	25	36	1	36	1.65
32570860--32570946	43	2.0	42	93	2	147	34	18	13	33	1.90
32571032--32571076	21	2.1	21	83	0	54	26	33	15	24	1.95
32572782--32572834	16	3.1	18	89	10	60	24	22	33	18	1.97
32572795--32572834	16	2.5	16	100	0	80	17	25	37	20	1.94
32573093--32573202	27	4.0	28	77	13	104	18	21	22	37	1.94
32582947--32582990	22	2.0	22	83	12	56	56	6	6	29	1.51
32583096--32583170	14	4.9	16	71	12	61	58	1	8	32	1.35
32583096--32583210	23	4.2	27	74	19	89	58	0	6	34	1.29
32583096--32583210	30	4.2	29	72	19	88	58	0	6	34	1.29
32583180--32583359	5	34.4	5	67	18	66	61	0	3	34	1.19
32583135--32583318	50	3.5	51	74	19	125	58	0	5	35	1.21
32583118--32583336	120	1.8	117	79	13	250	59	0	5	35	1.23
32583266--32583362	10	9.6	10	78	12	92	64	1	1	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32583285--32583372	10	7.4	12	78	15	69	68	1	0	30	0.97
32593569--32593828	45	5.9	45	85	2	332	28	28	18	25	1.98
32612409--32612463	26	2.0	27	82	13	67	40	0	12	47	1.42
32613486--32613533	21	2.3	21	86	10	64	60	4	16	18	1.51
32614484--32614542	30	1.9	31	89	3	93	47	1	20	30	1.60
32614739--32614814	31	2.5	30	74	8	73	38	0	5	56	1.22
32616649--32616806	46	3.4	46	97	0	289	37	15	23	23	1.93
32616748--32616863	57	2.0	57	94	0	205	40	12	24	22	1.89
32616805--32617025	46	4.8	46	90	1	300	41	13	23	21	1.89
32616702--32616902	103	2.0	103	94	0	357	38	14	23	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345