genome.fa.s6.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  204  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69167807--69167839	17	1.9	17	100	0	66	48	0	12	39	1.40
69181998--69182128	27	4.8	27	78	5	122	36	9	23	30	1.86
69182008--69182128	54	2.2	54	79	5	138	35	9	24	29	1.88
69187428--69187576	42	3.5	42	78	6	140	24	17	25	32	1.97
69187428--69187583	43	3.6	42	77	10	174	23	17	26	32	1.96
69189713--69189895	40	4.6	40	99	0	357	22	22	27	26	1.99
69191447--69191706	39	6.7	40	86	7	331	25	21	27	26	1.99
69191447--69191704	76	3.3	77	84	7	317	25	21	27	25	2.00
69199136--69199311	47	3.7	50	79	14	187	28	28	21	22	1.99
69199141--69199311	94	1.8	92	93	2	297	28	29	21	21	1.98
69199727--69199786	30	2.0	30	90	0	93	30	25	8	36	1.85
69206693--69206860	46	3.6	45	78	7	185	28	28	20	22	1.98
69206694--69206864	93	1.8	93	92	0	288	28	28	20	22	1.98
69207282--69207341	30	2.0	30	87	3	86	30	25	6	38	1.81
69212581--69212618	19	2.0	20	85	15	53	39	23	0	36	1.55
69212848--69213018	93	1.8	93	91	2	281	29	27	20	22	1.99
69212843--69213015	46	3.7	46	76	11	183	30	26	20	23	1.98
69213438--69213497	30	2.0	30	83	0	75	33	25	3	38	1.72
69215573--69215694	43	2.9	41	80	7	136	30	17	24	27	1.97
69235174--69235611	47	9.3	47	95	0	741	31	8	30	28	1.88
69240287--69240487	101	2.0	99	86	1	276	28	25	19	26	1.99
69241293--69241353	30	2.0	30	87	0	86	29	22	8	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69246398--69246460	28	2.2	28	85	0	90	26	34	12	25	1.92
69249867--69249902	18	2.1	18	89	5	56	16	33	22	27	1.95
69253105--69253129	8	3.1	8	100	0	50	0	36	48	16	1.46
69261577--69261627	16	3.2	16	78	10	68	21	23	0	54	1.44
69269758--69269954	40	4.9	40	81	1	225	24	23	26	25	2.00
69269758--69269942	80	2.3	81	85	2	257	25	23	25	24	2.00
69273194--69273227	17	2.0	17	100	0	68	29	35	11	23	1.90
69276138--69276187	20	2.5	20	86	3	64	36	12	2	50	1.51
69278988--69279195	45	4.6	45	84	0	263	44	13	19	22	1.85
69279347--69279398	27	1.9	27	84	0	68	38	11	21	28	1.88
69281396--69281607	53	3.9	54	77	5	214	38	17	23	20	1.93
69285514--69285691	27	6.6	27	80	6	171	29	28	15	26	1.96
69289542--69289578	18	2.1	18	100	0	74	43	18	5	32	1.73
69296243--69296425	27	6.8	27	81	5	136	33	20	7	37	1.81
69296254--69296412	54	2.9	54	80	1	158	32	20	7	39	1.81
69296362--69296608	27	9.2	27	77	7	182	40	20	8	30	1.81
69296377--69296523	79	1.9	79	84	5	199	41	19	8	29	1.82
69296619--69296670	27	1.9	27	88	7	79	40	13	11	34	1.81
69296711--69296784	27	2.7	26	74	12	69	39	20	18	21	1.93
69297597--69297690	25	3.8	25	87	1	136	27	24	21	26	1.99
69297904--69298077	31	5.7	31	89	4	250	30	18	24	27	1.98
69301501--69301844	40	8.6	40	84	1	386	17	28	18	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69301566--69301713	20	7.4	20	66	6	93	16	29	19	34	1.94
69301501--69301844	80	4.3	80	83	3	433	17	28	18	36	1.93
69301501--69301844	120	2.9	119	84	4	435	17	28	18	36	1.93
69309068--69309111	22	2.0	22	100	0	88	31	22	9	36	1.86
69310126--69310242	28	4.3	27	80	9	112	34	18	23	23	1.96
69322532--69322687	43	3.6	43	86	0	222	27	15	27	29	1.96
69322532--69322714	86	2.1	86	82	2	215	27	15	26	31	1.96
69322532--69322714	43	4.3	43	82	1	143	27	15	26	31	1.96
69322673--69322851	56	3.2	56	83	0	214	27	13	24	34	1.93
69325491--69325552	30	2.1	30	84	0	79	43	3	24	29	1.70
69330691--69330873	67	2.8	64	76	8	174	30	16	29	23	1.96
69339777--69340045	46	5.8	45	72	10	220	21	20	29	29	1.98
69339829--69339991	47	3.5	47	74	8	179	22	20	28	28	1.98
69339774--69340038	93	2.8	93	93	0	431	21	20	29	28	1.98
69347691--69347805	46	2.5	44	81	6	133	28	18	28	24	1.98
69353227--69353827	300	2.0	300	97	0	1139	30	15	24	29	1.95
69355493--69355705	46	4.6	46	76	13	156	26	17	28	27	1.98
69356886--69356926	22	1.9	22	90	5	66	9	43	26	19	1.82
69366387--69366433	19	2.3	20	82	10	60	36	0	14	48	1.44
69368180--69368337	40	4.0	40	85	3	228	27	27	20	24	1.99
69376463--69376620	40	4.0	40	87	3	237	27	27	21	23	1.99
69378559--69378621	32	2.0	32	90	0	99	28	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69378590--69378805	50	4.3	50	74	3	218	26	17	25	29	1.98
69381870--69381927	25	2.3	25	82	11	66	65	1	10	22	1.32
69381870--69381953	26	3.4	25	72	21	70	67	1	10	20	1.27
69385761--69386079	27	11.8	27	92	0	467	28	21	9	40	1.84
69386031--69386332	27	11.2	27	84	4	243	39	21	8	30	1.83
69386031--69386332	54	5.6	54	81	4	304	39	21	8	30	1.83
69386072--69386362	27	10.8	27	85	0	330	40	20	8	30	1.82
69386316--69386399	27	3.1	28	77	6	84	40	19	15	25	1.90
69386609--69386678	25	2.8	25	91	0	113	27	24	22	25	2.00
69393938--69393976	14	2.9	13	81	7	51	61	10	10	17	1.55
69396340--69396397	25	2.3	25	82	11	66	65	1	10	22	1.32
69403351--69403534	40	4.7	40	83	9	209	26	26	22	24	2.00
69404958--69405078	56	2.2	56	98	0	233	22	23	9	44	1.82
69405661--69405769	43	2.6	42	76	11	98	30	26	20	22	1.98
69410442--69410472	16	1.9	16	93	0	53	41	3	19	35	1.67
69412248--69412340	46	2.0	47	93	2	161	22	25	21	30	1.99
69415149--69415282	49	2.8	48	81	6	128	26	16	29	26	1.97
69415148--69415237	24	3.7	24	76	2	81	26	17	27	27	1.98
69415193--69415260	24	2.8	24	82	4	84	26	16	30	26	1.96
69416394--69416432	15	2.6	16	92	8	64	12	17	15	53	1.72
69419322--69419353	16	2.0	16	93	0	55	46	0	18	34	1.49
69422572--69422666	49	1.9	50	89	2	147	31	18	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69422574--69422666	25	3.8	25	80	11	111	32	18	25	23	1.97
69424871--69424985	48	2.4	48	92	0	194	17	18	26	37	1.93
69427136--69427161	12	2.2	12	100	0	52	23	15	23	38	1.92
69435839--69435867	15	1.9	15	100	0	58	58	0	0	41	0.98
69445749--69446104	49	7.4	47	93	3	552	27	30	7	33	1.85
69445749--69446104	96	3.7	95	92	3	572	27	30	7	33	1.85
69445931--69446012	27	3.2	27	64	22	77	31	29	4	34	1.79
69451291--69451392	28	3.5	28	69	23	84	28	31	16	23	1.96
69451291--69451428	60	2.3	59	81	8	163	28	28	17	26	1.98
69451421--69451466	20	2.3	20	82	14	60	28	28	17	26	1.98
69455333--69455434	28	3.5	27	68	19	71	27	28	19	24	1.99
69455334--69455470	60	2.3	59	81	8	152	27	25	20	27	1.99
69456430--69456485	25	2.3	23	76	11	58	62	0	33	3	1.12
69457761--69457837	29	2.7	29	89	0	118	24	15	29	29	1.96
69460538--69460709	93	1.8	93	92	0	290	28	30	20	20	1.98
69460540--69460705	46	3.6	45	75	17	169	28	30	20	21	1.98
69463435--69463503	30	2.3	30	85	7	97	59	17	14	8	1.60
69463435--69463503	15	4.7	15	80	8	79	59	17	14	8	1.60
69466402--69466668	46	5.8	46	76	15	253	28	28	19	23	1.98
69466455--69466622	47	3.6	46	75	15	166	29	29	17	23	1.97
69466409--69466674	93	2.9	93	91	1	408	28	28	19	23	1.98
69472214--69472480	40	6.8	40	86	5	366	24	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69472218--69472500	117	2.4	119	91	4	450	24	20	28	26	1.99
69480460--69480728	40	6.8	40	88	3	393	24	21	28	25	1.99
69480464--69480748	118	2.4	120	92	2	479	24	21	28	25	1.99
69482398--69482451	16	3.4	16	81	0	63	50	22	18	9	1.75
69482692--69482756	29	2.2	29	88	0	94	24	13	27	33	1.93
69485913--69486068	38	4.1	38	88	3	224	23	22	23	30	1.99
69485893--69486070	76	2.3	78	86	5	254	23	22	24	29	1.99
69487475--69487646	93	1.8	93	96	0	317	27	29	21	20	1.98
69487468--69487643	46	3.8	46	79	12	216	28	29	21	20	1.98
69494761--69494930	93	1.8	93	92	0	286	28	28	20	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345