genome.fa.s6.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  124  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41753867--41753899	16	2.1	16	100	0	66	45	0	6	48	1.27
41757131--41757282	40	3.8	40	84	5	182	26	25	22	26	2.00
41760751--41760859	30	3.6	29	74	8	94	60	0	0	39	0.97
41760760--41760808	18	2.6	19	87	6	64	53	0	0	46	1.00
41760744--41760857	10	11.5	10	74	12	67	61	0	0	37	1.02
41760806--41760868	10	5.6	12	82	16	57	68	0	0	31	0.90
41762265--41762340	34	2.2	34	92	0	125	25	6	30	38	1.81
41766973--41767441	133	3.5	133	77	5	369	34	18	20	26	1.95
41767231--41767474	133	1.8	133	89	1	382	32	18	19	29	1.95
41771030--41771081	20	2.6	19	80	17	52	38	1	0	59	1.08
41771028--41771169	46	3.1	46	75	16	125	31	3	0	64	1.16
41771109--41771169	27	2.3	26	80	2	68	24	3	1	70	1.11
41771493--41771544	23	2.2	24	83	6	63	48	0	3	48	1.20
41772755--41772792	9	4.3	9	80	6	51	55	0	2	42	1.14
41773711--41773784	20	3.7	20	74	10	62	62	0	2	35	1.10
41781770--41781846	35	2.2	35	88	0	109	32	12	20	33	1.91
41785419--41785462	21	2.1	21	91	0	70	20	15	6	56	1.62
41787230--41787566	136	2.5	129	85	9	417	32	12	29	25	1.93
41790608--41790649	20	2.0	22	86	9	61	47	0	11	40	1.40
41791488--41791514	2	13.5	2	100	0	54	51	0	0	48	1.00
41794954--41795108	42	3.6	42	75	12	145	32	24	16	25	1.96
41798600--41798639	21	1.9	21	100	0	80	32	20	10	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41804074--41804185	42	2.6	43	75	10	122	28	19	24	27	1.99
41804459--41804511	26	2.0	26	100	0	106	33	0	22	43	1.54
41814935--41814971	19	1.9	19	88	0	56	37	2	21	37	1.68
41816196--41816243	3	16.0	3	100	0	96	66	0	0	33	0.92
41816378--41816412	10	3.5	10	100	0	70	71	0	0	28	0.86
41816373--41816417	14	3.2	14	84	15	58	71	0	2	26	0.98
41816752--41816778	14	1.9	14	100	0	54	88	0	0	11	0.50
41817618--41817654	19	1.9	19	88	0	56	37	2	21	37	1.68
41818264--41818303	7	5.4	7	82	11	53	37	2	0	60	1.11
41818222--41818306	27	3.3	26	75	12	77	42	1	1	55	1.15
41819116--41819282	78	2.2	75	82	10	191	43	1	17	36	1.60
41819252--41819338	29	3.1	28	78	16	74	47	0	16	36	1.47
41821833--41821867	5	6.6	5	87	12	52	17	0	0	82	0.66
41829066--41829208	61	2.4	57	83	8	171	46	0	2	51	1.15
41829144--41829204	26	2.4	25	81	5	68	45	0	0	54	1.00
41829374--41829429	23	2.4	24	79	8	62	32	25	3	39	1.73
41832714--41832771	26	2.2	26	84	3	71	55	13	10	20	1.68
41844581--41844732	43	3.5	43	76	12	152	22	18	28	30	1.97
41844570--41844731	86	1.9	87	82	11	208	23	17	26	32	1.96
41844570--41844720	44	3.5	43	79	7	153	23	17	25	33	1.96
41846389--41846429	22	1.9	22	85	14	59	26	4	24	43	1.74
41861200--41861281	42	2.0	42	90	0	128	21	36	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41868717--41868827	32	3.4	32	83	3	134	39	8	9	43	1.66
41869732--41869785	17	3.2	17	76	10	65	57	7	7	27	1.53
41872043--41872134	45	2.0	45	100	0	184	31	14	13	41	1.83
41872654--41872823	48	3.6	47	81	6	191	26	30	17	25	1.97
41875174--41875227	29	1.9	27	85	7	72	44	1	24	29	1.64
41875172--41875233	29	2.2	27	77	5	70	43	1	25	29	1.64
41875777--41875895	47	2.5	47	93	0	211	24	15	27	32	1.95
41891615--41891674	29	2.1	27	81	6	66	41	3	26	28	1.71
41898762--41898817	17	3.2	17	71	14	60	67	8	3	19	1.32
41898759--41898831	35	2.1	35	97	0	137	63	8	6	21	1.46
41909175--41909248	29	2.6	29	86	4	96	25	31	16	27	1.96
41917323--41917396	29	2.6	29	86	4	96	25	31	16	27	1.96
41920577--41920642	29	2.3	29	81	5	71	30	21	3	45	1.67
41922485--41922527	19	2.4	18	85	11	61	62	16	6	13	1.51
41930291--41930333	19	2.4	18	85	11	61	62	16	6	13	1.51
41939155--41939189	16	2.2	16	100	0	70	22	31	20	25	1.98
41941208--41941309	49	2.1	49	100	0	204	18	33	3	44	1.68
41967323--41967365	20	2.2	20	86	0	59	25	30	25	18	1.98
41969102--41969299	50	3.9	50	80	3	236	29	26	18	25	1.98
41969095--41969294	101	2.0	101	93	0	346	29	26	19	25	1.98
41973143--41973197	18	2.8	20	84	15	64	38	3	0	58	1.16
41973144--41973198	19	3.0	19	76	23	64	38	1	0	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41993633--41993691	6	9.5	6	78	7	64	79	1	5	13	0.97
41993645--41993689	20	2.1	21	92	8	74	80	0	6	13	0.91
42006048--42006183	46	3.0	46	88	0	200	25	30	8	35	1.86
42006157--42006398	47	5.1	47	86	4	322	27	28	9	33	1.89
42006157--42006398	98	2.5	97	86	2	337	27	28	9	33	1.89
42006245--42006320	23	3.2	25	62	24	63	23	31	13	31	1.93
42010050--42010326	40	6.9	40	92	1	414	25	27	21	24	1.99
42011809--42011945	46	3.0	46	89	0	202	25	31	8	34	1.86
42011919--42012207	47	6.1	47	87	3	362	27	29	10	32	1.90
42012011--42012086	24	3.2	24	65	29	63	26	31	13	28	1.93
42012031--42012108	25	3.2	25	66	23	67	30	30	10	28	1.90
42020600--42020730	46	2.8	48	80	12	164	22	19	27	30	1.98
42022468--42022547	37	2.2	37	95	4	144	25	10	21	43	1.83
42024878--42024911	3	11.3	3	100	0	68	32	0	0	67	0.91
42024968--42025012	20	2.2	20	92	0	72	22	24	11	42	1.86
42025029--42025072	19	2.3	19	92	4	70	52	18	6	22	1.69
42025219--42025265	3	15.7	3	95	0	85	68	0	31	0	0.90
42026242--42026282	21	2.0	21	85	0	55	26	26	19	26	1.99
42026377--42026425	20	2.5	20	96	0	89	36	12	26	24	1.91
42030747--42030824	24	3.2	24	75	12	70	33	20	29	16	1.95
42034194--42034234	20	2.0	20	100	0	82	43	19	9	26	1.82
42047733--42047822	44	2.0	44	100	0	180	28	6	14	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42058283--42058440	47	3.4	47	94	0	262	36	9	28	25	1.87
42058366--42058514	74	2.0	74	98	0	289	34	14	27	24	1.94
42058319--42058702	121	3.0	121	85	7	444	33	12	28	25	1.92
42058283--42058608	168	1.9	168	91	0	535	34	11	29	25	1.90
42058618--42058689	22	3.1	22	66	24	58	31	13	29	25	1.94
42058639--42058716	25	3.2	25	65	23	67	34	11	25	28	1.91
42058440--42058782	94	3.6	94	89	2	485	32	12	29	25	1.92
42058442--42058782	141	2.4	141	87	2	481	32	12	29	25	1.92
42058440--42058742	47	6.4	47	94	0	489	32	13	29	25	1.93
42058756--42058892	46	3.0	46	87	0	184	35	9	30	24	1.87
42075429--42075648	40	5.6	39	86	5	273	22	26	25	25	2.00
42075419--42075648	79	2.9	79	90	3	329	22	27	25	24	2.00
42099723--42099800	40	1.9	41	84	2	104	26	28	19	25	1.99
42099818--42099961	43	3.3	42	76	8	130	27	27	19	26	1.99
42106682--42106812	41	3.2	41	87	2	192	19	22	8	48	1.76
42113344--42113416	31	2.4	30	79	4	83	35	10	13	39	1.80
42117906--42117937	16	1.9	17	93	6	57	50	15	3	31	1.60
42121680--42121776	40	2.4	42	86	6	130	28	16	28	25	1.97
42124824--42124868	24	1.9	23	82	13	56	15	24	22	37	1.93
42131523--42131570	25	1.9	25	91	0	78	27	12	18	41	1.86
42138889--42138954	17	3.6	17	75	20	71	42	1	0	56	1.08
42138892--42138940	19	2.5	20	81	12	57	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42138925--42139018	25	4.0	25	71	20	76	31	3	0	64	1.09
42138949--42138997	19	2.7	18	84	6	71	32	4	0	63	1.13
42140106--42140186	41	2.0	41	85	0	108	35	3	22	38	1.72
42144786--42145048	45	5.8	44	80	8	219	38	10	21	29	1.87
42144869--42145025	14	10.5	15	67	15	76	42	10	18	28	1.84
42144786--42145047	90	2.9	90	77	8	266	38	10	20	29	1.87
42152853--42152891	22	1.9	20	85	15	53	38	0	0	61	0.96
42158454--42158493	19	2.0	20	90	4	64	57	10	2	30	1.45
42158557--42158608	25	2.1	25	85	7	70	73	1	9	15	1.18
42164117--42164203	41	2.2	40	82	2	102	65	8	1	25	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345