genome.fa.s6.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  122  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40902188--40902298	40	2.8	39	82	5	116	25	21	28	24	1.99
40905420--40905497	26	3.0	25	88	7	86	39	3	28	28	1.74
40906937--40907011	37	2.0	37	100	0	150	48	5	10	36	1.61
40909087--40909168	42	2.0	42	82	0	101	26	18	24	30	1.98
40910216--40910265	18	2.8	18	72	9	57	38	16	24	22	1.93
40910619--40910734	27	4.4	27	77	6	103	22	14	18	43	1.87
40910729--40911390	27	24.7	27	87	1	839	36	14	13	35	1.86
40923326--40923401	37	2.1	37	100	0	152	44	5	17	32	1.71
40930372--40930808	50	8.8	50	85	2	578	27	18	29	24	1.98
40938251--40938289	21	1.9	21	94	5	71	10	38	30	20	1.86
40938561--40938797	50	4.8	50	83	3	286	29	18	27	24	1.98
40941271--40941327	27	2.1	27	83	3	71	22	19	19	38	1.93
40945752--40945815	31	2.1	31	90	0	101	25	23	15	35	1.94
40946029--40946103	23	3.1	25	90	9	129	28	20	20	32	1.97
40946162--40946238	9	7.9	9	72	16	64	35	20	9	35	1.85
40946158--40946240	20	4.2	20	96	0	157	32	19	12	36	1.88
40946158--40946229	11	7.1	11	70	17	66	31	19	12	36	1.89
40946277--40946324	25	1.9	25	86	0	69	25	16	25	33	1.96
40950085--40950260	39	4.5	39	85	5	196	26	20	28	25	1.99
40950038--40950260	78	2.8	78	81	9	222	25	21	28	25	1.99
40950118--40950293	78	2.3	79	83	4	205	26	21	28	23	1.99
40958011--40958187	40	4.5	39	82	7	189	25	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40958005--40958187	80	2.3	77	80	9	208	25	21	28	24	1.99
40972173--40972254	23	3.6	23	81	0	110	23	19	17	40	1.91
40972400--40972485	33	2.6	33	90	0	127	24	20	26	27	1.99
40972382--40972465	33	2.9	28	77	17	89	25	25	26	23	2.00
40977213--40977319	40	2.7	40	94	0	178	21	20	27	30	1.98
40981605--40981781	40	4.5	39	82	4	187	24	22	26	26	2.00
40981605--40981781	80	2.2	79	84	4	230	24	22	26	26	2.00
41079182--41079289	26	4.2	26	90	0	171	36	24	9	30	1.87
41080851--41081019	92	1.8	92	93	2	295	28	28	21	21	1.98
41080850--41081016	45	3.7	44	80	12	203	28	28	20	21	1.98
41081458--41081517	30	2.0	30	90	0	93	30	25	8	36	1.85
41088424--41088594	93	1.8	93	93	0	297	28	28	21	21	1.98
41088419--41088591	46	3.7	46	79	10	208	29	27	20	21	1.98
41089013--41089072	30	2.0	30	90	0	93	30	25	8	36	1.85
41092716--41092754	20	2.0	20	100	0	78	35	15	23	25	1.94
41097831--41097865	16	2.2	16	94	0	61	71	2	0	25	1.00
41097835--41097875	16	2.6	16	88	0	55	70	4	0	24	1.06
41102638--41102813	46	3.8	46	80	12	225	20	20	29	29	1.98
41102635--41102806	93	1.8	93	97	0	326	20	20	29	28	1.98
41104626--41104671	24	2.0	23	82	4	56	41	10	19	28	1.85
41110047--41110222	46	3.8	46	79	12	216	20	20	30	28	1.98
41110044--41110215	93	1.8	93	96	0	317	20	20	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41112150--41112372	40	5.6	40	83	3	227	25	20	27	26	1.99
41119071--41119291	40	5.6	40	87	4	245	25	20	27	26	1.99
41119071--41119326	78	3.3	79	81	5	243	26	20	27	25	1.99
41120888--41121014	60	2.1	60	91	2	202	24	8	12	54	1.66
41127683--41127846	78	2.1	77	82	5	188	26	27	21	24	2.00
41127703--41127846	39	3.7	39	86	1	191	25	27	22	25	2.00
41147786--41147835	12	4.2	12	78	0	55	30	0	46	24	1.53
41149168--41149295	27	4.7	27	96	0	229	31	15	14	39	1.87
41149168--41149322	54	2.9	54	87	1	141	32	16	14	35	1.90
41149168--41149322	81	1.9	80	82	5	195	32	16	14	35	1.90
41153146--41153242	40	2.4	41	84	6	128	27	28	16	26	1.97
41162923--41163047	46	2.7	46	96	0	223	29	28	20	20	1.98
41162928--41163070	46	3.1	45	87	4	137	28	27	21	21	1.99
41163477--41163536	30	2.0	30	90	0	93	31	25	8	35	1.85
41165343--41165401	10	6.0	10	76	2	57	50	1	0	47	1.11
41165346--41165591	30	8.0	30	66	20	123	52	2	1	43	1.24
41165549--41165597	25	2.0	24	84	4	62	57	0	2	40	1.10
41169850--41169895	15	2.9	15	90	6	65	54	8	0	36	1.32
41169857--41169895	19	2.1	19	90	0	60	53	7	0	38	1.30
41169962--41169994	3	11.0	3	93	0	57	63	0	3	33	1.10
41170185--41170346	23	7.0	23	67	21	74	54	4	8	32	1.51
41170500--41170533	17	2.0	17	94	0	59	67	2	0	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41180324--41180363	13	3.1	13	88	0	53	25	30	27	17	1.97
41188726--41188773	13	3.5	15	75	16	50	56	2	0	41	1.11
41189623--41189655	2	16.5	2	100	0	66	0	0	48	51	1.00
41189664--41189752	44	2.0	44	93	4	153	32	19	19	29	1.96
41194423--41194492	30	2.3	31	97	2	133	40	21	5	32	1.77
41194718--41194772	26	2.2	26	96	3	103	23	3	9	63	1.40
41196154--41196200	3	15.7	3	100	0	94	68	0	0	31	0.90
41197074--41197136	28	2.2	28	88	0	90	31	4	30	33	1.78
41197529--41197820	147	2.0	147	98	0	566	26	17	19	36	1.94
41198562--41198632	33	2.2	33	100	0	142	33	12	19	33	1.90
41213270--41213332	28	2.2	28	88	0	90	31	4	30	33	1.78
41214498--41214563	20	3.3	20	81	8	82	42	1	4	51	1.31
41214434--41214553	55	2.2	55	80	7	138	42	3	2	51	1.31
41214484--41214568	20	4.2	20	76	11	77	40	1	3	55	1.25
41216390--41216565	49	3.5	50	82	3	219	25	18	27	29	1.98
41217623--41217660	19	2.0	20	85	15	53	39	23	0	36	1.55
41217890--41218060	93	1.8	93	93	0	297	28	28	21	21	1.98
41217885--41218057	46	3.7	46	79	10	208	29	27	20	21	1.98
41225203--41225240	19	2.0	20	85	15	53	39	23	0	36	1.55
41225470--41225639	93	1.8	92	91	1	277	29	28	20	21	1.98
41225514--41225655	46	3.1	45	71	18	114	29	28	19	23	1.98
41233215--41233340	49	2.6	47	79	3	135	24	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41238869--41239180	40	7.8	40	93	0	516	22	20	29	26	1.99
41242156--41242329	27	6.4	27	83	4	197	27	14	27	29	1.96
41242157--41242312	82	1.9	81	88	3	233	26	15	28	29	1.96
41245985--41246032	25	1.9	25	83	8	62	75	4	16	4	1.12
41264557--41264733	40	4.5	40	91	4	272	23	23	28	25	2.00
41272551--41272765	40	5.5	40	90	6	316	23	22	28	24	1.99
41272547--41272765	79	2.8	79	89	6	322	24	22	28	24	1.99
41280647--41280877	40	5.8	39	90	1	302	21	23	29	25	1.99
41280647--41280877	120	1.9	119	88	4	349	21	23	29	25	1.99
41283561--41283717	51	3.1	51	94	1	280	39	25	5	29	1.77
41285544--41285610	33	2.0	33	97	0	125	47	14	1	35	1.54
41286643--41286849	53	3.8	54	77	4	211	20	23	18	37	1.94
41294163--41294300	53	2.5	55	80	4	156	21	22	17	38	1.93
41297253--41297277	12	2.1	12	100	0	50	40	20	24	16	1.91
41297169--41297275	45	2.4	45	88	3	153	39	18	20	21	1.93
41298333--41298393	22	2.9	20	79	11	68	18	4	3	73	1.14
41298538--41298600	33	1.9	33	87	9	94	53	6	0	39	1.26
41298573--41298630	17	3.2	17	78	11	53	50	8	1	39	1.43
41298877--41298931	19	2.8	19	82	15	60	56	3	0	40	1.17
41303326--41303350	12	2.1	12	100	0	50	56	0	8	36	1.29
41305848--41306097	27	9.3	27	87	0	338	36	19	21	23	1.95
41305851--41306083	81	2.9	81	92	0	385	35	19	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41306512--41306591	31	2.6	31	91	0	124	18	17	15	48	1.81
41306512--41306617	6	17.3	6	72	14	83	19	16	14	50	1.79
41310851--41310957	45	2.4	45	87	6	146	39	17	20	22	1.93
41311168--41311246	40	2.0	40	82	0	95	39	17	8	34	1.81
41312230--41312292	33	1.9	33	87	9	94	53	6	0	39	1.26
41312565--41312619	19	2.8	19	82	15	60	56	3	0	40	1.17
41312593--41312627	9	3.8	9	88	7	52	54	0	0	45	0.99
41314434--41314606	46	3.7	46	77	13	201	21	20	27	29	1.98
41314431--41314601	93	1.8	93	93	0	297	21	21	28	28	1.98
41329426--41329478	6	8.7	6	78	2	52	28	16	18	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345