genome.fa.s6.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  135  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45773169--45773220	27	1.9	27	96	0	95	23	1	13	61	1.42
45773168--45773230	27	2.3	27	86	5	92	20	1	12	65	1.35
45779066--45779131	33	2.0	33	87	0	96	25	42	4	27	1.74
45784769--45784854	38	2.3	38	87	4	129	30	33	11	24	1.91
45787247--45787361	27	4.3	26	86	5	140	37	23	22	16	1.94
45787247--45787361	54	2.1	54	87	3	160	37	23	22	16	1.94
45789343--45789386	23	2.0	23	86	13	65	15	2	11	70	1.26
45812158--45812205	18	2.7	18	93	3	80	62	10	6	20	1.49
45815737--45815906	52	3.3	52	89	6	235	28	14	30	27	1.95
45815732--45815906	51	3.5	51	83	7	223	28	14	29	28	1.95
45816031--45816055	12	2.1	12	100	0	50	44	8	16	32	1.76
45816242--45816293	26	2.0	26	96	0	95	42	3	17	36	1.67
45827082--45827113	12	2.7	12	95	0	55	18	6	0	75	1.01
45828725--45828851	63	2.0	63	98	0	245	36	11	22	29	1.89
45831175--45831324	43	3.5	43	80	8	171	24	18	24	33	1.97
45831180--45831341	43	3.8	43	79	8	118	24	16	25	33	1.96
45833663--45833721	28	2.1	28	84	12	86	30	5	27	37	1.78
45833670--45833726	28	2.0	28	100	0	114	31	7	21	40	1.80
45839779--45839826	24	2.0	24	100	0	96	54	8	12	25	1.65
45841494--45841620	49	2.5	51	92	3	204	28	14	29	27	1.96
45843191--45843277	32	2.7	32	80	0	102	24	21	22	31	1.99
45843487--45843551	32	2.0	32	85	5	87	10	16	30	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45844120--45844152	18	1.9	17	88	11	50	42	12	15	30	1.83
45848847--45848951	43	2.4	43	82	3	122	30	22	17	29	1.96
45853871--45854026	42	3.7	42	83	3	188	26	25	17	30	1.97
45856129--45856213	38	2.3	38	84	12	113	16	14	11	57	1.65
45866541--45866675	40	3.4	40	86	4	186	23	22	30	23	1.99
45868147--45868208	23	2.7	23	84	0	88	37	16	25	20	1.93
45868737--45868797	30	2.0	30	100	0	122	27	26	6	39	1.81
45874329--45874373	16	2.8	16	96	0	81	46	22	20	11	1.81
45874602--45874705	28	3.7	28	84	2	129	25	16	31	25	1.96
45878230--45878450	40	5.6	40	91	2	331	22	27	23	26	1.99
45889261--45889303	18	2.3	19	84	4	52	18	37	27	16	1.92
45889270--45889303	9	3.7	9	88	4	50	17	35	26	20	1.95
45894688--45894720	12	2.8	12	95	0	57	6	48	18	27	1.71
45896064--45896123	28	2.1	28	84	0	75	28	16	21	33	1.95
45898597--45898770	27	6.4	27	85	4	215	31	27	14	26	1.95
45898614--45898769	82	1.9	81	90	3	251	30	28	15	25	1.96
45905838--45906015	27	6.6	27	84	3	205	29	28	15	26	1.96
45905859--45906014	82	1.9	81	88	3	233	29	28	15	26	1.96
45913953--45914215	40	6.6	40	87	3	316	26	28	20	24	1.99
45916377--45916424	25	1.9	25	100	0	96	29	31	12	27	1.93
45924321--45924349	10	2.9	10	100	0	58	41	31	0	27	1.56
45924903--45924934	13	2.5	13	100	0	64	25	6	21	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45925368--45925408	21	2.0	20	95	4	73	26	0	24	48	1.51
45929469--45929590	47	2.6	47	96	0	217	35	13	24	26	1.93
45930305--45930491	6	30.8	6	76	18	174	48	14	17	19	1.81
45930284--45930491	30	7.1	30	78	15	111	48	14	17	19	1.81
45930305--45930491	91	2.1	91	94	0	329	48	14	17	19	1.81
45930609--45930674	27	2.5	26	85	7	87	37	22	22	16	1.93
45930609--45930682	27	2.8	27	78	13	82	36	21	24	17	1.95
45930633--45930690	27	2.1	27	84	6	73	36	27	20	15	1.93
45933029--45933081	23	2.4	22	76	20	56	9	18	1	69	1.25
45935609--45935667	22	2.7	22	81	0	64	32	22	25	20	1.98
45935755--45935833	27	3.0	26	83	5	86	37	20	20	21	1.94
45936036--45936221	27	6.9	27	81	2	149	26	20	16	35	1.94
45936036--45936221	54	3.4	54	82	1	203	26	20	16	35	1.94
45936062--45936229	54	3.1	54	83	2	212	27	19	17	36	1.94
45936062--45936229	27	6.2	27	82	2	178	27	19	17	36	1.94
45936234--45936912	27	25.2	27	82	5	775	40	9	21	27	1.85
45938910--45939069	6	26.8	6	73	17	129	48	13	16	21	1.80
45938911--45939041	30	4.6	30	77	16	145	48	12	16	21	1.80
45939185--45939250	27	2.5	26	82	7	78	36	22	24	16	1.94
45939209--45939266	27	2.1	27	81	6	64	34	27	22	15	1.94
45939570--45939650	27	3.0	28	85	7	96	38	19	20	20	1.94
45939850--45940045	27	7.3	27	82	0	221	26	19	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45940050--45940560	27	19.1	27	83	7	596	40	9	21	27	1.85
45942563--45942667	6	17.3	6	72	20	85	47	14	19	19	1.82
45942563--45942668	24	4.6	24	70	15	107	47	14	18	19	1.83
45942623--45942725	30	3.4	30	78	4	109	47	13	16	22	1.81
45942862--45942916	27	2.0	27	83	13	69	38	20	25	16	1.92
45942867--45942924	27	2.1	27	81	12	66	37	27	20	13	1.91
45943227--45943309	27	3.1	26	80	3	85	37	20	21	20	1.95
45943474--45943668	27	7.2	27	84	2	239	26	20	17	34	1.95
45943473--45943668	54	3.6	54	86	2	268	26	20	18	34	1.95
45943673--45944245	27	21.2	27	83	3	652	40	9	21	28	1.84
45945137--45945274	53	2.6	53	84	4	188	34	18	24	22	1.96
45948551--45948854	27	11.3	27	90	0	455	33	20	21	24	1.97
45949299--45949363	22	3.0	22	77	8	69	20	24	21	33	1.97
45949521--45949604	27	3.1	26	77	6	78	19	22	20	38	1.94
45949543--45949623	27	3.1	26	84	10	94	20	23	18	37	1.94
45949711--45949769	22	2.7	22	81	0	64	20	25	20	33	1.97
45949934--45950008	27	2.8	26	82	6	87	18	24	20	37	1.94
45950125--45950208	6	13.8	6	83	12	109	17	17	15	48	1.81
45952177--45952407	81	2.9	81	89	1	338	35	20	18	25	1.95
45952177--45952407	27	8.6	27	86	0	293	35	20	18	25	1.95
45953075--45953178	27	3.9	27	83	5	129	19	23	20	37	1.94
45953266--45953324	22	2.7	22	81	0	64	20	25	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45953497--45953562	27	2.5	27	82	7	73	18	21	22	37	1.94
45953680--45953751	6	11.8	6	76	14	67	19	18	12	50	1.78
45961558--45961587	15	1.9	16	93	6	53	56	0	0	43	0.99
45963312--45963852	47	11.5	47	94	0	902	32	8	30	29	1.87
45963970--45964048	37	2.1	37	88	4	115	25	18	30	25	1.98
45965890--45965989	42	2.4	43	95	5	179	22	15	36	27	1.93
45965972--45966043	29	2.5	29	86	6	94	26	15	31	26	1.95
45966292--45966367	31	2.6	28	83	6	89	25	28	17	28	1.97
45967924--45967959	18	2.1	18	94	5	65	22	0	36	41	1.54
45969799--45969944	27	5.4	27	84	0	184	35	18	19	26	1.95
45969800--45969944	54	2.7	54	89	0	209	35	18	19	26	1.95
45973100--45973238	20	6.9	20	75	3	100	14	32	15	37	1.88
45975358--45975418	32	1.9	31	83	9	79	36	24	4	34	1.77
45978029--45978466	47	9.0	45	71	12	180	35	17	24	23	1.95
45978163--45978283	46	2.6	47	89	2	190	37	13	23	25	1.91
45978163--45978298	46	2.9	45	84	5	121	36	14	24	25	1.93
45978262--45978469	53	3.9	54	81	4	240	35	16	24	24	1.95
45978262--45978461	54	3.7	54	82	4	242	35	17	24	23	1.95
45984279--45984362	44	1.9	44	82	4	107	36	10	23	28	1.89
45985829--45985957	46	2.8	46	91	2	197	21	20	27	29	1.98
45987262--45987399	53	2.6	53	84	4	179	33	19	25	21	1.97
45988549--45988690	46	3.2	45	81	5	146	19	17	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45988701--45988826	45	2.8	45	83	0	144	24	22	19	34	1.96
45989887--45989937	26	2.0	26	96	0	93	31	25	25	17	1.97
45998300--45998374	34	2.2	34	95	0	132	26	24	22	26	2.00
46002270--46002467	27	7.3	27	83	2	236	28	23	8	39	1.84
46002273--46002467	81	2.4	81	88	1	275	28	22	8	40	1.83
46002499--46002649	27	5.6	27	80	4	162	42	23	5	28	1.77
46002499--46002650	54	2.8	54	85	4	200	42	23	5	28	1.77
46002499--46002648	81	1.9	81	81	8	189	42	22	6	28	1.77
46002499--46002671	54	3.2	54	79	6	190	41	21	6	30	1.79
46002710--46002773	27	2.4	27	82	10	69	39	17	21	21	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345