genome.fa.s6.2.7.7.80.10.50.1000.270.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  270  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91976244--91976453	40	5.2	40	90	1	289	26	26	21	25	2.00
91978352--91978611	93	2.8	93	78	3	290	27	22	19	30	1.98
91986759--91986904	27	5.4	27	90	0	193	35	19	19	25	1.95
91987646--91987705	27	2.3	27	85	2	77	21	23	20	35	1.96
91993404--91993548	27	5.4	27	87	0	191	35	16	20	27	1.94
91993404--91993571	54	3.1	54	85	3	216	35	16	20	27	1.94
91994227--91994277	27	1.9	26	84	4	66	19	27	17	35	1.94
91998696--91998748	24	2.2	25	83	10	65	37	16	13	32	1.88
92004221--92004267	24	2.0	24	84	12	62	70	0	17	12	1.17
92005406--92005583	27	6.6	27	83	3	205	26	15	28	29	1.96
92005407--92005562	82	1.9	81	88	3	233	26	15	28	29	1.96
92005404--92005583	82	2.2	81	83	3	227	27	15	27	29	1.96
92012054--92012100	24	2.0	24	84	12	62	70	0	17	12	1.17
92012821--92012855	2	17.5	2	93	0	52	48	5	0	45	1.26
92013238--92013417	27	6.6	27	83	3	209	26	15	28	30	1.96
92013241--92013396	82	1.9	81	88	3	233	26	15	28	29	1.96
92013239--92013417	82	2.2	81	82	3	225	26	15	27	30	1.96
92015061--92015177	62	1.9	59	82	5	144	51	3	5	40	1.41
92019815--92019993	85	2.1	85	98	0	349	37	8	27	26	1.85
92022174--92022753	47	12.1	47	87	5	820	30	12	30	25	1.93
92022727--92022817	46	2.0	46	84	0	119	32	9	31	25	1.89
92022962--92023070	37	2.9	37	91	0	164	23	17	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92032618--92032667	22	2.3	22	96	3	93	28	8	24	40	1.83
92037215--92037436	64	3.4	64	73	12	182	24	29	15	31	1.95
92037930--92037987	30	1.9	30	85	0	80	29	22	8	39	1.84
92045567--92045672	44	2.5	43	84	6	126	22	18	29	29	1.98
92058576--92058659	39	2.2	39	93	0	141	28	25	23	22	1.99
92064389--92064535	40	3.7	40	83	5	120	25	27	21	25	2.00
92064435--92064615	80	2.3	80	83	9	219	27	27	20	23	1.99
92064432--92064615	40	4.6	40	81	7	196	28	27	20	23	1.99
92072236--92072342	40	2.7	40	84	5	119	25	27	20	27	1.99
92072242--92072462	80	2.8	80	79	7	193	27	27	20	25	1.99
92072282--92072462	80	2.3	80	83	9	219	27	27	20	23	1.99
92072279--92072462	40	4.6	40	81	7	196	28	27	20	23	1.99
92073965--92074123	39	4.1	39	90	0	237	27	20	22	29	1.98
92088606--92089159	47	11.7	47	94	1	948	32	8	29	29	1.87
92090995--92091042	22	2.1	24	85	14	66	52	0	6	41	1.27
92091123--92091162	14	2.7	14	84	7	53	50	0	0	50	1.00
92107060--92107185	42	2.9	43	77	8	132	24	16	25	33	1.96
92112460--92112532	29	2.5	30	84	2	94	32	8	23	35	1.84
92112913--92113087	49	3.6	48	81	5	160	29	20	29	21	1.98
92112959--92113328	49	7.6	48	78	6	338	27	20	27	24	1.99
92113007--92113328	146	2.2	146	90	0	511	27	19	27	25	1.99
92118386--92118426	21	2.0	21	85	4	57	19	34	24	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92131146--92131189	17	2.7	16	78	3	52	81	4	2	11	0.92
92132139--92132191	7	7.6	7	100	0	106	15	43	13	28	1.84
92132139--92132199	21	3.0	21	95	2	106	14	42	13	29	1.84
92136090--92136232	69	2.1	69	81	2	162	35	18	9	36	1.84
92138952--92139054	43	2.4	43	91	0	161	24	22	28	25	1.99
92139635--92139667	16	1.9	18	88	11	52	18	12	18	51	1.76
92147477--92147650	52	3.4	50	87	4	242	28	14	29	28	1.95
92147477--92147650	51	3.4	51	88	4	246	28	14	29	28	1.95
92149799--92149842	21	2.1	21	82	0	52	27	22	2	47	1.63
92149970--92150121	43	3.5	42	78	7	146	29	26	18	25	1.98
92154069--92154111	22	1.9	23	85	4	61	46	9	0	44	1.35
92154395--92154436	22	2.0	22	90	4	68	40	11	2	45	1.54
92154607--92154761	69	2.3	69	80	3	170	34	17	5	41	1.73
92169194--92169357	46	3.6	45	75	12	145	31	18	26	23	1.98
92177600--92177686	39	2.2	39	87	0	120	21	21	31	25	1.98
92184828--92184887	30	2.0	30	90	0	93	30	25	8	36	1.85
92191801--92191970	92	1.8	93	93	1	297	28	27	21	22	1.99
92191793--92191966	46	3.8	46	76	14	196	28	27	21	22	1.99
92193766--92193885	48	2.5	47	84	2	150	28	19	25	26	1.99
92193909--92194027	49	2.4	49	83	4	141	29	18	28	23	1.98
92194189--92194251	31	2.0	31	100	0	126	25	3	34	36	1.72
92197032--92197068	19	1.9	19	88	0	56	32	13	2	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92213249--92213363	43	2.7	43	87	4	153	31	28	18	21	1.97
92230318--92230425	45	2.5	44	82	8	123	31	26	17	24	1.97
92231549--92231581	14	2.3	15	94	5	59	54	18	0	27	1.44
92232922--92233017	40	2.4	42	81	15	114	30	27	13	29	1.94
92232922--92233034	40	2.8	40	81	6	104	30	26	12	30	1.93
92244592--92244650	18	3.7	18	63	32	53	33	13	27	25	1.93
92246243--92246371	50	2.5	51	82	1	161	31	25	15	27	1.96
92247557--92247583	10	2.7	10	100	0	54	40	11	14	33	1.82
92249185--92249218	15	2.2	16	89	5	52	61	17	5	14	1.52
92265958--92266086	40	3.2	40	85	5	179	24	25	24	24	2.00
92267272--92267347	38	2.0	38	97	0	143	32	23	11	31	1.91
92275570--92275619	26	1.9	26	100	0	100	50	20	6	24	1.70
92277778--92277804	14	1.9	14	100	0	54	66	7	0	25	1.17
92278053--92278080	13	2.2	13	100	0	56	42	14	14	28	1.84
92279085--92279155	33	2.1	34	84	7	92	28	25	23	22	2.00
92279538--92279730	27	7.1	27	80	0	215	26	19	21	33	1.97
92283174--92283242	27	2.5	27	74	6	68	44	18	8	27	1.79
92284273--92284432	27	6.0	27	80	2	180	25	20	20	34	1.96
92284274--92284432	53	3.0	53	83	1	210	25	20	19	34	1.96
92289992--92290106	29	4.0	29	85	6	137	27	27	15	28	1.96
92290285--92290330	24	1.9	24	86	0	65	10	21	17	50	1.77
92291885--92291954	24	3.2	24	61	23	62	45	20	0	34	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92291876--92291957	42	2.0	42	100	0	164	46	21	0	31	1.52
92298943--92299181	50	4.8	50	78	7	227	28	21	27	23	1.99
92303284--92303578	50	5.8	51	78	2	265	31	27	16	24	1.96
92303348--92303531	101	1.8	101	90	0	296	28	26	17	26	1.98
92310779--92310951	46	3.8	45	76	13	181	23	20	26	30	1.99
92310776--92310945	93	1.8	93	92	0	286	23	20	27	29	1.99
92326915--92326955	14	2.7	16	77	14	50	68	0	29	2	1.03
92328383--92328429	22	2.3	19	85	14	58	44	2	0	53	1.12
92328385--92328426	16	2.7	15	79	20	50	45	2	0	52	1.13
92330329--92330367	19	2.0	20	85	14	55	38	23	0	38	1.55
92330582--92330753	46	3.7	45	77	11	170	30	27	19	22	1.98
92330587--92330757	93	1.8	93	89	0	270	29	28	19	22	1.98
92333286--92333526	45	5.2	47	87	8	343	36	6	25	31	1.81
92333288--92333526	92	2.6	92	91	5	378	36	6	25	31	1.81
92333541--92333644	46	2.3	45	90	8	158	35	4	25	33	1.77
92333776--92333842	34	1.9	36	90	6	111	22	16	34	26	1.95
92335532--92335878	43	8.1	43	94	0	597	13	24	30	31	1.93
92336009--92336143	29	4.7	29	68	9	80	22	17	29	30	1.96
92336060--92336140	28	2.9	27	74	7	81	22	17	30	29	1.96
92336072--92336164	28	3.3	28	70	7	71	20	16	34	29	1.94
92336014--92336146	58	2.3	58	89	1	205	22	16	30	30	1.96
92339538--92339779	48	5.0	48	90	0	358	37	7	23	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92349242--92349385	40	3.6	40	84	5	175	24	25	24	25	2.00
92351448--92351630	79	2.3	81	82	9	216	26	26	22	24	2.00
92351427--92351630	40	5.1	40	79	10	213	25	26	22	24	2.00
92353694--92353732	1	39.0	1	100	0	78	0	0	0	100	0.00
92359036--92359259	79	2.8	79	85	6	294	25	28	22	24	1.99
92359017--92359259	40	6.1	40	84	7	300	25	27	22	24	2.00
92366185--92366409	40	5.6	40	80	6	224	25	24	27	23	2.00
92366185--92366445	80	3.3	80	80	3	276	26	23	26	24	2.00
92366185--92366407	120	1.9	121	82	4	290	25	23	26	23	2.00
92368847--92369636	47	16.7	47	93	1	1303	29	28	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345