Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  312  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105499614--105499725
43
2.6
42
76
8
100
32
25
16
25
1.97
105513813--105513853
6
7.0
6
88
5
57
17
4
0
78
0.93
105517943--105518003
30
2.0
30
96
0
113
36
22
18
22
1.95
105518503--105518546
13
3.4
13
78
12
54
77
0
2
20
0.88
105520291--105520320
15
2.0
15
93
0
51
30
16
13
40
1.87
105520613--105520839
43
5.3
43
84
0
292
29
11
22
36
1.90
105525332--105525386
13
4.5
13
80
13
71
49
7
0
43
1.30
105525520--105525560
8
5.4
8
88
11
59
26
21
2
48
1.63
105525520--105525560
15
2.7
15
92
0
64
26
21
2
48
1.63
105527165--105527333
57
3.1
57
64
25
155
34
17
18
29
1.94
105527124--105527333
106
2.0
106
96
0
384
35
16
17
30
1.92
105527517--105527549
16
2.0
17
88
5
50
51
0
18
30
1.46
105534554--105534613
10
6.0
10
84
11
79
68
1
8
21
1.25
105538341--105538437
39
2.5
38
78
5
106
23
23
28
23
1.99
105545201--105545301
38
2.5
41
71
12
102
23
19
28
27
1.99
105545203--105545337
39
3.4
39
76
8
123
24
20
27
27
1.99
105545442--105545482
18
2.3
18
87
8
57
48
0
21
29
1.50
105547830--105547872
21
2.0
21
100
0
86
39
18
4
37
1.72
105556164--105556221
20
2.9
20
81
0
71
15
31
32
20
1.94
105560018--105560080
6
9.8
6
86
10
72
79
3
0
17
0.86
105566495--105566544
10
4.9
11
76
16
54
66
2
10
22
1.32
105567067--105567108
22
1.9
22
85
9
59
52
7
7
33
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105575394--105575445
11
4.7
11
75
0
59
30
5
0
63
1.18
105575420--105575493
33
2.3
32
80
13
89
31
1
5
62
1.26
105593850--105593890
15
2.6
16
81
18
50
9
14
0
75
1.04
105599421--105599468
21
2.3
20
79
10
53
25
18
10
45
1.81
105599518--105599584
33
2.0
33
91
0
107
11
28
23
35
1.91
105612162--105612212
21
2.4
22
83
6
61
27
7
1
62
1.33
105612678--105612719
21
2.0
21
100
0
84
47
23
14
14
1.80
105613330--105613473
73
2.0
73
91
1
236
40
18
4
35
1.72
105613517--105613614
40
2.4
39
75
14
101
36
13
3
46
1.58
105613520--105613590
13
5.4
13
76
15
65
40
12
2
43
1.57
105613867--105614082
45
4.8
44
73
5
139
24
21
15
38
1.92
105615354--105615431
41
1.9
41
86
5
113
15
20
33
30
1.94
105622479--105622600
50
2.4
51
93
2
210
36
14
22
26
1.93
105622583--105622701
31
3.8
31
85
4
150
26
19
27
26
1.99
105622719--105622842
47
2.7
46
86
2
167
27
16
27
29
1.97
105622723--105622877
47
3.3
46
86
3
157
27
14
27
30
1.95
105625544--105626093
46
12.0
46
93
0
884
40
14
23
22
1.90
105626893--105626980
42
2.1
42
89
4
133
30
14
26
28
1.95
105626893--105626990
42
2.3
42
85
3
117
30
14
25
29
1.95
105626968--105627011
21
2.1
21
100
0
88
36
13
20
29
1.91
105634806--105634983
27
6.6
27
74
6
119
28
16
26
29
1.97
105634803--105634983
82
2.2
81
81
4
204
28
16
25
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105642820--105642997
27
6.6
27
74
6
119
28
16
26
29
1.97
105642817--105642997
82
2.2
81
81
4
204
28
16
25
29
1.97
105644677--105644728
24
2.1
25
82
10
63
32
23
26
17
1.96
105651976--105652135
51
3.2
50
90
1
239
29
22
15
33
1.94
105652305--105652337
10
3.4
10
95
4
59
39
0
15
45
1.46
105656198--105656353
25
6.3
25
71
14
99
33
21
25
18
1.96
105656160--105656326
74
2.3
73
81
6
201
34
21
26
17
1.96
105659114--105659146
13
2.5
13
90
9
50
36
6
3
54
1.41
105659248--105659304
28
2.2
25
81
9
60
52
7
5
35
1.51
105659813--105659860
25
1.9
25
87
8
71
43
0
2
54
1.12
105660038--105660112
38
2.0
38
82
10
91
45
1
0
53
1.08
105662910--105662948
16
2.5
16
87
4
53
38
15
7
38
1.76
105663675--105663717
21
2.1
20
86
4
59
51
0
4
44
1.22
105664301--105664328
2
14.0
2
100
0
56
50
0
0
50
1.00
105671037--105671077
20
2.1
20
86
13
59
39
2
2
56
1.26
105671048--105671139
20
4.5
19
75
15
69
30
2
2
65
1.16
105671047--105671139
41
2.3
40
80
10
100
30
2
2
65
1.16
105675595--105676092
92
5.4
92
85
1
597
34
24
16
24
1.95
105680683--105680722
11
3.6
11
79
0
53
20
12
10
57
1.63
105680945--105680977
11
2.9
12
86
13
52
66
0
0
33
0.92
105682053--105682179
35
3.6
34
78
6
130
32
11
23
32
1.91
105689135--105689234
15
6.3
16
73
24
72
60
2
7
31
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105689171--105689210
17
2.4
17
86
0
53
57
2
10
30
1.45
105694389--105694419
15
2.1
15
100
0
62
19
6
19
54
1.65
105695031--105695080
5
9.6
5
76
23
50
60
0
2
38
1.09
105695025--105695081
24
2.5
24
86
13
77
57
0
3
38
1.16
105695033--105695075
8
5.4
8
88
0
68
60
0
2
37
1.10
105695031--105695080
16
3.2
16
78
21
61
60
0
2
38
1.09
105707210--105707443
126
1.9
126
89
1
371
38
15
16
28
1.90
105707986--105708027
18
2.3
18
84
8
50
59
11
4
23
1.51
105708046--105708216
3
56.7
3
70
8
89
63
2
2
32
1.20
105708049--105708102
14
3.8
14
81
13
65
72
0
0
27
0.85
105708046--105708123
23
3.4
23
71
18
63
66
1
1
30
1.07
105708049--105708189
20
6.9
20
68
13
74
63
2
2
30
1.23
105708046--105708216
43
4.0
43
70
12
118
63
2
2
32
1.20
105708579--105708646
29
2.3
30
89
2
102
20
0
48
30
1.50
105708579--105708635
17
3.6
17
68
22
52
21
0
49
29
1.50
105708933--105709241
133
2.3
134
87
3
444
27
22
20
30
1.98
105708933--105709902
46
21.6
46
65
16
232
27
21
20
30
1.98
105709067--105709422
181
2.0
178
86
3
489
27
22
19
30
1.98
105709246--105709555
133
2.3
134
84
3
410
27
21
19
31
1.97
105708933--105709885
314
3.0
314
96
0
1755
27
21
20
30
1.98
105709402--105709736
181
1.9
178
85
5
467
27
21
20
30
1.98
105709590--105709869
133
2.1
134
85
6
372
28
22
20
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105709908--105710685
85
9.2
85
88
2
1154
20
26
23
29
1.99
105709916--105710826
255
3.5
253
87
5
1227
20
26
23
28
1.99
105710667--105710706
21
1.9
21
100
0
80
32
22
15
30
1.94
105710582--105710791
106
2.0
106
93
0
357
23
26
21
29
1.99
105712826--105712866
19
2.2
19
83
12
50
0
9
4
85
0.73
105716576--105716802
126
1.8
126
90
0
364
38
16
16
29
1.90
105717331--105717372
18
2.3
18
84
8
50
59
11
4
23
1.51
105717391--105717563
3
56.7
3
70
12
86
61
3
2
31
1.27
105717390--105717472
17
5.0
17
72
11
64
61
3
2
32
1.26
105717508--105717547
17
2.4
16
91
8
62
60
2
0
37
1.11
105717925--105717992
29
2.3
30
89
2
102
20
0
48
30
1.50
105717925--105717981
17
3.6
17
68
22
52
21
0
49
29
1.50
105721073--105721144
30
2.4
30
83
2
81
51
9
1
37
1.44
105730560--105730600
21
1.9
22
85
5
57
19
39
24
17
1.92
105730616--105730686
37
1.9
36
94
2
124
38
11
11
39
1.77
105732848--105732903
26
2.2
26
96
0
103
30
7
25
37
1.82
105735905--105735982
35
2.3
35
84
6
106
41
21
16
20
1.91
105741323--105741366
18
2.5
17
81
3
52
65
0
20
13
1.26
105742674--105742743
31
2.3
30
83
11
81
38
7
10
44
1.65
105744812--105744863
15
3.4
16
71
7
54
55
11
1
30
1.46
105744852--105744902
19
2.7
19
84
0
66
52
15
5
25
1.65
105751669--105751733
32
2.0
32
96
0
121
40
23
6
30
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105756513--105756555
12
3.6
12
96
0
77
16
48
25
9
1.75
105759691--105759755
32
2.0
32
93
0
112
40
21
6
32
1.78
105760784--105760844
27
2.3
27
78
18
65
67
4
4
22
1.30
105763231--105763270
19
2.1
19
86
9
55
52
7
2
37
1.43
105765626--105765801
50
3.5
50
91
0
271
35
14
23
26
1.94
105765781--105765956
31
5.7
31
90
0
280
27
20
27
25
1.99
105765978--105766244
48
5.7
49
80
10
249
29
14
25
29
1.95
105766152--105766262
42
2.6
42
91
2
170
30
14
27
27
1.95
105770016--105770049
18
1.9
18
94
5
61
55
5
11
26
1.58
105770753--105770793
20
2.0
20
85
0
55
60
2
7
29
1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345