genome.fa.s6.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  189  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63884524--63884590	20	3.3	20	91	0	107	34	13	20	31	1.92
63884640--63884809	24	7.0	24	91	4	261	30	20	21	28	1.98
63884640--63884789	50	3.0	50	93	3	259	31	20	20	28	1.97
63893662--63893883	48	4.6	48	77	12	206	35	27	17	20	1.95
63899754--63899888	45	3.0	45	92	0	216	25	22	25	26	2.00
63901178--63901353	46	3.8	45	79	10	203	21	20	29	28	1.98
63901175--63901345	93	1.8	93	93	0	297	21	21	29	28	1.98
63908477--63908639	43	3.8	43	77	8	136	30	14	23	31	1.94
63909658--63909682	13	1.9	13	100	0	50	32	28	24	16	1.96
63910806--63910851	20	2.3	20	96	0	83	50	19	10	19	1.77
63911815--63911861	21	2.4	19	82	10	58	27	2	23	46	1.63
63915716--63915766	20	2.3	20	80	12	57	49	23	7	19	1.74
63920761--63920819	14	4.2	14	78	8	57	20	33	6	38	1.79
63924024--63924386	75	4.8	75	82	4	372	25	19	21	33	1.97
63924017--63924418	40	10.8	36	66	14	136	24	19	22	33	1.97
63924018--63924262	40	6.5	39	68	14	138	24	19	21	34	1.96
63924017--63924386	151	2.5	151	79	3	377	25	19	21	33	1.97
63924324--63924429	35	3.0	36	71	8	108	26	22	22	28	1.99
63924504--63924549	24	1.9	24	90	0	74	58	0	19	21	1.39
63924503--63924560	24	2.4	24	82	0	71	58	1	17	22	1.47
63926601--63926714	43	2.7	44	75	12	105	35	26	14	24	1.93
63926617--63926727	43	2.6	43	80	7	111	36	26	12	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63929042--63929120	37	2.1	37	83	4	97	24	32	18	24	1.97
63929239--63929787	47	11.5	47	92	1	873	29	29	9	32	1.88
63933047--63933087	20	2.0	20	100	0	82	41	24	14	19	1.89
63933617--63933761	37	3.9	37	91	0	218	26	31	20	22	1.98
63933880--63934289	47	8.6	47	93	1	685	29	29	8	32	1.86
63936480--63936658	85	2.1	85	98	0	349	26	27	8	37	1.85
63943149--63943281	3	44.3	3	71	12	51	57	2	9	30	1.42
63943174--63943259	33	2.4	38	83	11	110	53	0	12	33	1.39
63943651--63943702	22	2.4	22	93	0	86	15	0	50	34	1.45
63947870--63947966	6	15.8	6	70	16	65	47	14	17	20	1.82
63947854--63947981	31	4.2	31	84	3	161	50	14	15	19	1.77
63947921--63947978	19	3.4	19	65	30	58	46	17	17	18	1.84
63948126--63948227	27	3.8	26	84	5	114	36	21	23	18	1.95
63948386--63948450	22	3.0	21	73	13	60	35	23	21	20	1.96
63948940--63949260	27	11.9	27	91	1	509	25	21	19	33	1.97
63948939--63949268	81	4.1	81	93	0	561	25	20	20	33	1.97
63948934--63949349	27	15.4	27	85	4	412	26	18	19	36	1.94
63949358--63949455	27	3.7	26	87	4	117	40	4	23	31	1.73
63949459--63949544	27	3.2	26	79	9	84	26	15	19	38	1.91
63949473--63949626	27	5.7	27	83	1	175	29	9	21	39	1.85
63949499--63949626	27	4.7	27	87	1	177	30	7	21	40	1.81
63951569--63951688	6	19.3	6	68	19	68	47	15	18	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63951582--63951688	31	3.4	31	90	1	151	47	15	17	18	1.83
63951620--63951677	19	3.4	19	65	30	58	46	17	17	18	1.84
63951825--63951926	27	3.8	26	88	5	132	37	21	23	17	1.94
63952087--63952149	22	2.9	22	79	9	74	34	23	23	17	1.96
63953795--63953973	63	2.8	65	78	9	197	30	16	29	22	1.96
63956064--63956390	27	12.3	27	86	2	412	26	20	19	33	1.96
63956412--63956497	27	3.2	26	86	6	118	39	2	19	38	1.65
63956491--63956548	27	2.1	28	81	9	75	25	20	20	32	1.97
63956500--63956586	27	3.2	27	81	3	86	28	13	19	37	1.90
63956542--63956667	27	4.7	27	87	3	166	33	5	19	41	1.75
63956544--63956667	53	2.3	54	88	1	178	33	5	19	41	1.75
63956573--63956683	27	4.2	26	77	12	109	34	6	18	41	1.75
63958102--63958279	45	4.0	45	78	6	188	23	15	28	33	1.95
63970738--63970953	112	1.9	112	86	0	306	40	16	12	31	1.84
63972596--63972627	2	16.0	2	100	0	64	50	0	50	0	1.00
63977672--63977728	29	2.0	29	86	3	80	21	15	22	40	1.91
63982789--63982935	72	2.0	72	100	0	294	20	10	8	60	1.55
63983685--63983710	8	3.2	8	100	0	52	38	0	34	26	1.57
63984392--63984442	18	2.8	19	70	11	61	47	3	7	41	1.51
63997835--63998961	88	12.8	88	87	1	1399	32	21	22	23	1.98
63997840--63999147	88	15.0	88	79	6	431	32	21	22	23	1.98
63998728--63998971	130	1.9	130	87	3	366	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63998724--63999138	216	1.9	216	91	0	677	30	22	21	25	1.99
63998900--63999142	130	1.9	130	91	1	398	29	22	22	25	1.99
63998724--63999142	44	9.7	44	71	11	215	30	22	22	25	1.99
63998900--63999213	130	2.4	130	83	6	361	30	23	20	26	1.98
63999161--63999566	44	9.2	44	63	10	166	29	24	18	27	1.98
63999145--63999568	88	4.8	88	89	0	605	30	24	17	27	1.97
63999602--63999990	44	8.8	44	71	11	231	30	18	22	28	1.98
64002113--64002137	13	1.9	13	100	0	50	24	0	4	72	1.02
64005738--64005778	12	3.5	12	83	12	50	2	17	2	78	0.98
64008049--64008255	53	3.8	54	79	3	229	38	17	23	20	1.93
64009600--64009674	33	2.2	35	83	7	100	30	18	26	24	1.98
64010815--64011079	40	6.7	40	83	4	322	26	27	20	26	1.99
64010815--64011079	80	3.3	80	91	0	424	26	27	20	26	1.99
64013739--64013781	20	2.2	20	100	0	86	13	34	27	23	1.93
64017589--64017865	40	7.0	40	84	4	339	26	29	19	24	1.99
64017593--64017866	80	3.4	80	92	0	433	26	29	19	24	1.99
64026546--64026643	27	3.5	28	87	2	126	26	14	28	30	1.95
64026574--64026656	27	3.0	27	85	5	87	30	13	25	31	1.93
64026546--64026657	28	4.0	27	81	6	89	28	13	25	32	1.94
64045813--64045870	26	2.2	26	87	0	80	36	22	24	17	1.95
64045827--64045881	26	2.1	26	86	6	76	32	21	29	16	1.95
64046139--64046177	22	1.9	20	85	15	53	53	12	0	33	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64053668--64054137	94	5.0	94	96	0	832	30	11	19	39	1.86
64057366--64057424	28	2.0	30	83	6	77	23	15	16	44	1.86
64059532--64059635	52	2.0	52	100	0	208	17	19	11	51	1.75
64060249--64060310	30	2.0	31	84	9	83	38	0	40	20	1.53
64063167--64063199	5	6.8	5	86	6	50	81	0	3	15	0.80
64072155--64072377	39	5.7	40	84	6	251	26	26	21	25	2.00
64072155--64072339	79	2.3	80	87	3	259	25	27	21	25	1.99
64072155--64072377	79	2.8	79	81	6	238	26	26	21	25	2.00
64074028--64074141	38	3.0	38	100	0	228	31	13	23	31	1.93
64075326--64075467	40	3.6	39	81	9	164	25	24	26	23	2.00
64075326--64075502	78	2.3	79	80	7	193	24	24	27	23	2.00
64076803--64076842	19	2.1	19	100	0	80	15	42	30	12	1.83
64080288--64080535	39	6.4	39	90	6	357	23	22	29	25	1.99
64080288--64080535	77	3.2	77	90	6	371	23	22	29	25	1.99
64088377--64088592	40	5.5	40	87	4	280	24	24	28	23	2.00
64088377--64088592	119	1.8	119	83	6	287	24	24	28	23	2.00
64095316--64095342	11	2.5	11	100	0	54	33	0	14	51	1.43
64106355--64106398	23	2.0	23	81	4	54	20	2	20	56	1.52
64108231--64108293	30	2.1	30	87	0	90	57	14	3	25	1.52
64108271--64108301	12	2.7	11	90	9	53	70	6	0	22	1.09
64109827--64109869	2	21.5	2	100	0	86	0	48	0	51	1.00
64111370--64111472	52	2.0	52	98	0	197	36	16	3	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64117551--64117626	38	2.0	38	97	0	143	34	3	17	44	1.67
64121678--64121765	45	1.9	46	84	6	117	37	14	20	27	1.92
64125130--64125170	19	2.2	19	86	8	57	48	7	12	31	1.68
64130433--64130650	40	5.5	40	87	2	271	25	27	23	22	2.00
64138534--64138737	40	5.1	40	85	5	254	25	26	24	23	2.00
64146526--64146572	21	2.2	22	85	11	62	38	51	6	4	1.47
64149526--64149570	22	2.0	22	83	8	56	40	4	0	55	1.20
64152324--64152507	40	4.6	40	89	2	255	23	28	24	22	1.99
64160333--64160565	40	5.9	39	82	5	270	24	27	22	24	2.00
64160333--64160562	80	2.9	80	88	3	313	25	28	22	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345