genome.fa.s6.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  161  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54891239--54891292	26	2.0	27	85	3	74	37	24	25	12	1.91
54891451--54891515	22	3.0	22	77	8	69	29	24	26	20	1.99
54891945--54892456	27	19.3	27	82	6	471	25	20	17	36	1.94
54891945--54892447	54	9.5	54	84	4	578	25	20	17	36	1.95
54891945--54892447	81	6.3	81	88	2	666	25	20	17	36	1.95
54892294--54892447	73	2.1	73	90	0	236	26	19	16	37	1.93
54892267--54892454	100	1.9	100	92	0	313	27	19	16	37	1.93
54892438--54892668	27	8.7	27	75	10	127	32	7	21	38	1.82
54892489--54892536	25	1.9	25	86	0	69	29	8	18	43	1.79
54892440--54892668	54	4.3	54	77	12	188	32	7	20	38	1.82
54893925--54894461	263	2.0	265	90	5	839	38	7	20	33	1.80
54894720--54894810	40	2.3	40	86	0	119	29	12	25	32	1.92
54902935--54903184	55	4.8	54	74	14	197	37	16	23	23	1.94
54913972--54914165	55	3.6	52	76	12	169	36	17	24	22	1.95
54916209--54916315	24	4.3	24	85	5	135	28	19	22	28	1.98
54917707--54917931	40	5.6	40	81	2	272	24	26	24	25	2.00
54917671--54917931	120	2.2	120	82	6	316	24	25	24	26	2.00
54919637--54919683	20	2.3	20	92	0	76	31	23	10	34	1.89
54934642--54934768	45	2.9	45	81	8	129	22	28	23	25	1.99
54936431--54936654	79	2.8	79	83	6	283	25	28	22	23	1.99
54936412--54936654	40	6.1	40	84	6	275	25	28	22	24	1.99
54938671--54938927	39	6.6	39	78	8	211	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54938671--54938927	78	3.3	74	82	6	246	25	28	21	24	1.99
54938859--54938936	40	1.9	41	82	10	97	26	28	20	24	1.99
54943366--54943521	82	1.9	81	85	3	215	26	16	28	28	1.97
54943365--54943518	55	2.9	52	82	7	175	27	16	27	27	1.97
54943366--54943521	27	5.7	27	81	6	163	26	16	28	28	1.97
54943358--54943542	27	6.8	27	75	9	101	26	16	28	29	1.97
54943358--54943542	82	2.3	81	78	2	210	26	16	28	29	1.97
55034758--55034940	79	2.3	82	83	7	225	24	21	27	26	1.99
55034760--55034942	40	4.6	39	82	8	210	24	20	27	26	1.99
55034758--55034975	79	2.7	77	77	11	183	25	20	27	27	1.99
55037904--55038154	27	9.3	27	85	3	274	41	20	6	31	1.79
55038067--55038191	27	4.6	27	77	7	101	40	23	5	31	1.77
55038173--55038420	27	9.2	27	87	2	320	37	18	21	23	1.94
55038145--55038407	81	3.3	79	80	6	244	36	19	19	24	1.95
55038175--55038424	81	3.1	81	85	0	365	36	18	20	23	1.95
55038625--55038708	27	3.2	26	88	5	123	19	22	21	36	1.95
55038831--55038910	31	2.6	31	89	0	124	18	18	15	47	1.83
55038831--55038924	6	15.3	6	75	16	86	19	18	14	47	1.82
55041908--55041959	26	2.0	26	100	0	104	34	7	23	34	1.83
55044059--55044088	14	2.1	15	93	6	53	60	13	0	26	1.34
55044045--55044126	39	2.1	39	86	8	114	57	13	3	25	1.53
55052384--55052655	46	5.8	49	77	7	219	24	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55058562--55058720	43	3.7	43	77	4	133	22	18	25	33	1.97
55067265--55067370	27	4.0	26	85	6	131	39	17	22	19	1.92
55068786--55068844	24	2.5	24	88	0	100	30	35	0	33	1.58
55075066--55075176	27	4.1	27	82	7	120	37	20	24	17	1.93
55076583--55076683	24	4.2	24	92	0	148	24	39	1	33	1.67
55078169--55078206	19	2.0	20	85	15	53	39	23	0	36	1.55
55078436--55078606	93	1.8	93	91	0	279	30	27	19	22	1.98
55078431--55078603	46	3.7	46	78	13	201	31	26	19	22	1.97
55079026--55079085	30	2.0	30	83	0	75	33	23	6	36	1.81
55091885--55091972	34	2.6	34	98	0	167	25	22	27	25	2.00
55092796--55092975	41	4.4	41	82	0	225	36	18	23	22	1.95
55092810--55092962	82	1.9	82	92	0	261	33	16	25	24	1.96
55093059--55093129	37	1.9	37	91	0	115	49	30	1	18	1.56
55093949--55093983	16	2.1	17	94	5	63	25	0	5	68	1.11
55094094--55094411	115	2.8	116	88	3	464	26	16	26	30	1.97
55097934--55098367	241	1.8	241	95	0	796	33	18	14	33	1.91
55098366--55098424	9	6.6	9	86	0	82	45	23	1	28	1.63
55098366--55098424	27	2.2	27	90	0	100	45	23	1	28	1.63
55104010--55104049	21	1.9	21	89	0	62	30	20	50	0	1.49
55104009--55104055	21	2.2	21	80	0	58	34	19	46	0	1.50
55104296--55104376	31	2.5	31	82	4	90	18	4	16	60	1.53
55106586--55106628	20	2.2	20	86	0	59	18	13	23	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55115306--55115513	40	5.2	40	94	1	346	28	26	21	23	1.99
55118051--55118099	24	2.0	24	100	0	98	51	24	8	16	1.71
55138971--55139021	25	2.0	25	100	0	102	35	11	11	41	1.78
55139183--55139253	23	3.0	23	76	12	81	22	23	16	36	1.94
55143538--55143654	29	4.0	29	84	0	117	27	33	11	27	1.92
55143873--55143919	16	2.9	16	93	0	76	10	25	19	44	1.82
55145159--55145189	16	1.9	16	100	0	62	6	0	38	54	1.26
55149045--55149108	28	2.3	28	86	2	85	40	29	7	21	1.82
55149212--55149326	27	4.3	26	79	7	122	20	20	21	36	1.95
55149212--55149294	28	3.1	27	84	5	87	20	20	22	36	1.95
55156928--55156991	28	2.3	28	89	2	94	37	26	7	28	1.84
55157095--55157171	28	2.8	27	86	11	120	16	23	24	35	1.95
55157095--55157209	27	4.3	26	85	7	131	18	20	23	38	1.93
55166127--55166161	18	1.9	18	88	0	52	28	17	2	51	1.59
55170096--55170269	50	3.5	49	81	7	181	28	28	18	24	1.98
55172404--55172453	14	3.5	14	77	22	59	64	12	12	12	1.51
55172396--55172459	28	2.3	29	79	17	73	64	14	12	9	1.50
55175460--55175653	50	3.9	49	81	6	212	27	28	19	24	1.98
55175471--55175657	101	1.9	99	86	4	268	27	29	18	24	1.98
55179016--55179176	43	3.8	41	76	11	137	21	19	25	33	1.97
55186836--55186860	9	2.8	9	100	0	50	12	0	28	60	1.32
55195538--55195596	9	6.4	9	84	2	64	52	20	5	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55197365--55197586	80	2.8	80	88	2	331	27	23	26	22	1.99
55197365--55197549	40	4.6	40	93	0	316	27	23	27	22	1.99
55205448--55205640	39	4.9	40	90	2	293	27	22	26	22	1.99
55205448--55205671	78	2.9	79	85	4	312	27	22	26	23	2.00
55207018--55207116	37	2.8	34	80	8	117	46	14	6	33	1.69
55207036--55207109	37	2.0	37	91	0	121	45	13	6	33	1.70
55211555--55211729	46	3.8	46	79	14	216	20	21	29	29	1.98
55211551--55211721	92	1.8	93	94	1	308	20	21	29	28	1.98
55214622--55214708	29	3.0	30	78	11	90	10	16	16	57	1.65
55214631--55214709	15	5.4	15	77	10	83	10	16	13	59	1.60
55219654--55219834	40	4.6	40	82	4	197	24	25	23	25	2.00
55219654--55219834	81	2.3	79	83	2	211	24	25	23	25	2.00
55224020--55224190	43	4.0	43	76	11	145	31	26	18	23	1.97
55225065--55225103	18	2.1	19	85	4	53	38	2	0	58	1.12
55231063--55231207	43	3.4	42	78	11	152	28	28	19	24	1.98
55234358--55234469	27	4.2	26	79	7	89	36	21	24	17	1.95
55234575--55234639	28	2.3	28	97	0	121	33	13	20	32	1.91
55241246--55241275	16	1.9	15	93	6	51	26	6	6	60	1.47
55242246--55242357	27	4.2	26	87	7	152	36	23	24	16	1.94
55242246--55242357	54	2.1	54	89	3	172	36	23	24	16	1.94
55242427--55242502	28	2.7	29	84	8	104	35	13	17	34	1.88
55247214--55247244	16	1.9	16	93	0	53	54	6	32	6	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55249500--55249537	20	1.9	20	100	0	76	34	15	7	42	1.76
55251727--55251887	27	6.0	27	89	0	241	29	9	22	37	1.87
55251724--55251891	54	3.1	54	92	0	273	29	9	22	38	1.85
55251694--55251900	27	7.7	27	74	7	152	30	9	20	39	1.84
55258269--55258302	18	1.9	18	88	5	52	50	11	23	14	1.76
55289085--55289206	46	2.7	46	94	0	208	28	29	21	20	1.98
55289083--55289225	46	3.1	45	86	4	137	28	29	20	20	1.98
55289627--55289686	30	2.0	30	90	0	93	30	25	8	36	1.85
55296609--55296781	46	3.7	46	74	10	190	30	27	20	21	1.98
55297204--55297263	30	2.0	30	86	0	84	30	25	6	38	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345