genome.fa.s6.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  139  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46962947--46963015	28	2.4	29	82	2	86	27	15	28	27	1.96
46963292--46963357	33	2.0	33	96	0	123	57	10	15	16	1.65
46963345--46963492	27	5.5	27	77	6	122	41	20	9	27	1.83
46969507--46969557	26	2.0	26	96	0	93	29	35	23	11	1.90
46969271--46969635	103	3.6	104	94	2	618	30	30	20	18	1.97
46969958--46970021	30	2.2	29	81	10	76	29	28	6	35	1.82
46969965--46970021	30	1.9	30	85	3	80	29	24	7	38	1.82
46976869--46976920	27	1.9	27	96	0	95	28	32	25	13	1.93
46977056--46977106	26	2.0	26	96	0	93	29	35	23	11	1.90
46976956--46977183	103	2.2	103	92	3	372	32	30	19	17	1.95
46977509--46977572	30	2.2	29	81	10	76	29	28	6	35	1.82
46977516--46977572	30	1.9	30	85	3	80	29	24	7	38	1.82
46986686--46986857	93	1.8	93	96	0	317	27	29	21	20	1.98
46986679--46986854	46	3.8	46	79	12	216	28	29	21	20	1.98
46994103--46994276	46	3.8	46	76	14	187	29	30	20	20	1.97
46994110--46994280	92	1.8	93	93	1	299	28	30	20	20	1.98
47001703--47001884	40	4.6	40	93	2	296	26	27	21	23	1.99
47006475--47006692	110	2.0	110	93	0	373	29	15	13	42	1.84
47012339--47012402	34	1.9	34	96	3	121	35	3	10	50	1.54
47014050--47014124	33	2.3	33	81	6	91	38	16	24	21	1.92
47015889--47015968	39	2.1	39	90	4	126	30	27	10	32	1.89
47015928--47016068	51	2.7	52	91	1	239	31	24	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47016092--47016190	28	3.7	27	81	15	125	25	25	14	35	1.93
47016103--47016181	24	3.1	25	82	14	99	24	22	15	37	1.92
47022285--47022313	3	9.7	3	100	0	58	65	0	0	34	0.93
47022741--47023008	48	5.6	48	89	1	351	25	16	29	28	1.97
47022773--47023047	144	1.9	145	80	3	322	26	16	27	29	1.97
47025049--47025100	20	2.6	20	90	0	77	23	30	28	17	1.97
47028473--47028606	47	2.9	47	82	9	166	29	19	28	23	1.98
47032623--47032663	22	1.9	22	90	5	66	19	24	41	14	1.89
47032702--47032919	116	1.9	116	96	0	400	27	28	20	22	1.99
47032899--47033015	40	2.9	40	84	3	155	16	36	23	23	1.94
47034864--47034961	28	3.5	28	90	2	135	31	28	13	26	1.94
47043072--47043246	46	3.7	45	75	10	131	20	26	21	32	1.98
47043067--47043201	46	2.8	49	72	8	136	20	27	21	31	1.98
47044621--47044791	93	1.8	93	87	0	252	22	19	28	30	1.98
47053406--47053577	48	3.6	48	87	3	240	24	16	31	27	1.97
47053406--47053577	94	1.8	94	88	2	265	24	16	31	27	1.97
47059803--47059952	28	5.3	28	80	13	164	25	32	15	26	1.95
47059863--47059937	29	2.6	29	85	4	89	25	36	17	21	1.95
47067270--47067318	24	2.0	24	100	0	98	32	4	20	42	1.71
47078432--47078558	42	2.8	45	76	8	116	30	16	23	29	1.96
47079444--47079721	27	10.3	27	78	7	201	41	20	10	27	1.85
47079444--47079721	54	5.2	52	77	10	222	41	20	10	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47079443--47079701	107	2.4	108	80	6	276	41	20	10	27	1.85
47079461--47079693	80	2.9	82	81	8	203	42	20	9	27	1.82
47079961--47080037	40	1.9	40	94	0	136	20	20	31	27	1.98
47080183--47080247	22	3.0	22	73	8	69	21	24	21	32	1.98
47098088--47098112	7	3.6	7	100	0	50	44	28	0	28	1.55
47098286--47098323	20	1.9	20	88	0	58	36	31	13	18	1.89
47105055--47105224	83	2.0	83	91	0	277	27	24	18	28	1.98
47107293--47107356	23	2.7	23	73	23	60	28	20	20	31	1.97
47107512--47107581	20	3.7	19	72	16	56	31	5	20	42	1.75
47107654--47107726	38	1.9	38	97	0	137	41	5	16	36	1.72
47111193--47111245	25	2.1	25	82	0	61	32	30	26	11	1.91
47112516--47112553	20	1.9	20	88	0	58	52	10	2	34	1.50
47116524--47116560	19	1.9	19	100	0	74	21	5	18	54	1.64
47116524--47116572	19	2.6	19	87	9	66	22	6	20	51	1.69
47127489--47127531	22	2.0	22	85	0	59	58	11	11	18	1.63
47127926--47127986	24	2.5	24	82	12	63	19	3	4	72	1.18
47128254--47128301	24	2.0	24	95	0	87	52	4	6	37	1.46
47135013--47135070	30	1.9	31	85	3	82	44	5	20	29	1.73
47137157--47137269	43	2.7	43	79	4	113	25	17	25	30	1.97
47144191--47144296	43	2.5	42	81	1	122	24	16	26	32	1.97
47144191--47144312	43	2.8	43	78	7	115	24	15	26	33	1.95
47146445--47146484	16	2.5	16	87	0	62	37	17	15	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47150326--47150477	67	2.2	69	79	10	170	31	16	30	21	1.95
47160607--47160689	23	3.3	23	67	16	67	38	1	10	49	1.46
47160583--47160686	51	2.0	51	98	0	199	34	1	12	50	1.51
47160590--47160672	28	3.1	28	66	16	86	36	1	10	51	1.45
47160604--47160689	28	3.2	28	69	21	94	37	1	10	51	1.44
47161071--47161102	7	4.6	7	100	0	64	15	53	0	31	1.43
47164160--47164328	46	3.7	47	77	16	176	21	20	29	28	1.98
47171629--47171804	46	3.8	46	79	12	216	20	21	29	28	1.98
47171625--47171797	93	1.9	93	96	0	319	20	21	30	27	1.98
47173691--47173836	37	3.9	37	95	0	238	26	31	17	23	1.97
47173978--47174218	48	5.0	48	95	0	419	29	27	6	35	1.82
47174174--47174292	37	3.2	37	100	0	238	31	26	7	35	1.84
47183208--47183407	81	2.5	81	79	6	226	28	27	21	23	1.99
47183209--47183393	41	4.6	41	82	4	216	27	26	22	23	1.99
47188406--47188496	27	3.4	27	81	6	114	25	21	10	41	1.86
47188422--47188508	26	3.3	26	87	4	113	25	19	13	41	1.88
47188460--47188652	27	7.2	26	71	10	95	35	21	12	30	1.90
47188528--47188651	27	4.6	27	75	7	119	41	21	8	28	1.83
47188548--47188652	54	1.9	54	86	0	147	40	20	9	30	1.84
47188663--47188714	27	1.9	27	88	7	79	42	13	9	34	1.77
47189642--47189711	25	2.8	24	91	4	104	24	27	24	24	2.00
47189641--47189724	25	3.4	24	83	8	98	27	23	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47189859--47189947	42	2.1	42	97	0	169	32	14	19	33	1.92
47189974--47190056	31	2.7	30	92	7	141	28	15	26	28	1.96
47191338--47191400	22	2.8	24	80	11	87	33	19	26	20	1.96
47191313--47191400	23	3.8	23	79	13	83	34	18	26	21	1.96
47191338--47191461	23	5.3	23	73	15	94	34	20	22	22	1.97
47196718--47196754	16	2.3	16	95	0	65	37	13	13	35	1.84
47209427--47209517	46	2.0	46	86	0	128	27	31	6	34	1.83
47209534--47210010	47	10.1	47	92	0	675	26	28	11	33	1.91
47209675--47209750	22	3.3	22	66	16	64	26	28	11	32	1.92
47209889--47209962	23	3.2	23	62	24	55	31	29	10	28	1.91
47217268--47217292	13	1.9	13	100	0	50	20	40	24	16	1.91
47224231--47224260	7	4.3	7	100	0	60	26	0	56	16	1.40
47228566--47228703	23	5.9	23	69	19	72	36	18	21	22	1.95
47233906--47233935	15	2.0	15	100	0	60	46	26	0	26	1.53
47237768--47237997	39	5.9	39	94	0	372	20	25	30	23	1.98
47242399--47242497	37	2.7	37	91	0	153	25	32	17	25	1.97
47242642--47242787	48	3.0	48	95	0	256	31	27	6	34	1.81
47246774--47247099	40	8.1	40	89	0	472	27	27	19	24	1.99
47248367--47248469	37	2.8	37	95	0	179	24	31	21	23	1.99
47248610--47248750	48	2.9	48	96	0	255	31	28	6	34	1.82
47268738--47268768	11	2.7	11	95	5	53	54	9	9	25	1.63
47268730--47268847	6	19.3	6	68	19	66	47	12	18	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47268780--47268847	25	2.7	25	88	0	100	45	13	20	20	1.84
47268751--47268825	31	2.5	31	91	2	116	45	13	21	20	1.84
47268751--47268847	31	3.4	30	75	17	98	46	12	20	20	1.83
47268964--47269043	27	3.0	27	83	8	92	37	20	23	18	1.94
47269130--47269193	22	2.9	22	81	9	85	32	23	25	18	1.97
47269708--47269794	27	3.2	27	86	0	111	27	20	17	34	1.95
47269833--47269984	27	5.7	26	80	7	144	26	9	23	40	1.85
47269779--47269935	81	1.9	81	81	2	190	31	9	22	36	1.86
47269826--47269984	81	2.0	81	81	7	189	27	9	22	40	1.85
47271023--47271173	33	4.5	33	72	6	106	31	15	26	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345