Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  138  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46698760--46699085
48
6.8
48
74
10
258
26
19
29
25
1.98
46698765--46699037
96
2.9
96
83
7
340
26
19
30
24
1.98
46698772--46699037
144
1.9
143
83
5
349
26
18
30
24
1.98
46698763--46699069
144
2.1
143
78
8
338
26
19
29
25
1.98
46704161--46704200
13
3.2
13
89
10
57
27
35
20
17
1.95
46704225--46704250
12
2.2
12
100
0
52
7
30
38
23
1.83
46707912--46708083
46
3.7
46
75
13
172
30
30
19
20
1.97
46707919--46708091
93
1.9
93
91
0
283
29
30
19
20
1.97
46713989--46714102
57
2.0
57
96
0
210
46
20
5
28
1.72
46717155--46717257
26
4.0
26
92
1
172
35
23
7
33
1.83
46721072--46721160
28
3.3
28
78
7
96
35
11
25
26
1.90
46721187--46721382
51
3.8
51
89
1
295
31
13
25
29
1.93
46732939--46733004
32
2.1
32
94
0
114
34
6
25
33
1.81
46735200--46735308
37
2.9
37
90
0
155
29
31
16
22
1.96
46735450--46736218
48
16.0
48
96
0
1385
30
27
6
35
1.81
46739803--46740706
42
22.0
42
88
3
1265
25
28
21
23
1.99
46739803--46740706
82
11.0
80
91
3
1238
25
28
21
23
1.99
46741987--46742128
37
3.8
37
90
1
214
26
33
16
23
1.96
46742273--46742993
48
15.0
48
96
0
1289
30
27
5
35
1.81
46747542--46747592
20
2.5
20
84
6
68
29
9
17
43
1.81
46761248--46761302
28
2.0
28
92
0
92
47
16
10
25
1.79
46762291--46762346
27
2.0
28
82
3
69
21
17
5
55
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46762645--46762680
18
2.0
18
100
0
72
33
11
33
22
1.89
46764596--46764628
12
2.8
12
86
4
50
33
0
0
66
0.92
46765344--46765385
20
2.3
19
88
12
61
26
0
4
69
1.08
46769014--46769061
15
3.2
15
80
11
62
58
14
14
12
1.64
46777802--46777868
18
3.9
18
72
23
56
28
1
0
70
0.96
46777804--46777863
15
3.9
14
73
26
50
28
1
0
70
0.97
46778099--46778193
16
5.5
16
69
22
59
41
2
1
55
1.18
46778098--46778214
55
2.1
56
91
1
191
42
3
1
52
1.28
46780681--46780750
33
2.1
33
84
5
88
64
11
12
11
1.51
46783302--46783330
15
1.9
15
100
0
58
41
13
3
41
1.62
46794041--46794088
25
1.9
25
86
0
69
35
22
14
27
1.93
46794136--46794191
11
5.5
11
71
16
57
35
12
19
32
1.89
46794125--46794191
20
3.3
20
93
0
116
34
11
20
32
1.90
46794241--46794406
23
7.0
23
90
4
244
28
22
21
27
1.99
46794241--46794405
71
2.3
70
92
4
269
28
22
21
27
1.99
46794599--46794662
31
2.1
31
90
0
101
35
15
23
25
1.94
46802210--46802257
25
1.9
25
82
0
60
33
22
16
27
1.96
46802305--46802360
11
5.5
11
71
16
57
35
12
19
32
1.89
46802294--46802360
20
3.3
20
93
0
116
34
11
20
32
1.90
46802410--46802576
24
7.0
23
85
7
219
29
22
20
26
1.98
46802410--46802575
47
3.5
46
86
6
217
29
22
21
27
1.99
46802410--46802575
71
2.3
71
91
3
262
29
22
21
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46802769--46802832
31
2.1
31
87
0
92
37
15
21
25
1.93
46814285--46814469
40
4.7
40
83
6
225
23
21
28
26
1.99
46814286--46814502
79
2.7
78
77
12
219
24
21
28
25
1.99
46816743--46816789
13
3.0
16
80
19
55
68
0
12
19
1.21
46820583--46820614
16
2.0
16
100
0
64
25
12
6
56
1.59
46827231--46827342
59
1.9
58
89
8
174
32
15
16
35
1.90
46827651--46827691
11
3.7
11
80
0
55
19
14
9
56
1.66
46827913--46827946
12
2.9
12
95
4
61
64
0
0
35
0.94
46828525--46828691
43
3.9
43
75
12
173
29
25
16
29
1.96
46828802--46828826
10
2.5
10
100
0
50
40
20
8
32
1.81
46830657--46830965
46
6.7
46
90
1
422
22
25
15
37
1.93
46833128--46833179
11
4.7
11
76
9
52
63
3
0
32
1.12
46847089--46847161
20
3.7
20
81
0
83
30
9
10
49
1.70
46852846--46853029
40
4.6
40
83
5
237
25
22
26
25
2.00
46854932--46855101
43
4.0
43
76
9
168
26
14
24
34
1.93
46855594--46855727
26
5.2
26
95
0
232
32
8
23
35
1.86
46857169--46857244
26
2.8
26
86
4
89
34
18
13
34
1.89
46857348--46857488
27
5.2
26
85
6
183
17
23
24
34
1.96
46857348--46857488
54
2.6
53
93
2
228
17
23
24
34
1.96
46857348--46857506
27
5.9
26
78
15
146
18
23
22
34
1.96
46859318--46859386
30
2.3
29
83
14
79
40
1
2
55
1.24
46862662--46863028
103
3.6
103
94
1
596
30
29
19
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46862899--46862950
26
2.0
26
96
0
95
28
34
23
13
1.92
46863354--46863417
30
2.2
29
81
10
76
29
28
6
35
1.82
46863361--46863417
30
1.9
30
85
3
80
29
24
7
38
1.82
46864330--46864456
46
2.8
46
98
0
245
35
15
25
23
1.94
46864442--46864471
15
2.0
15
100
0
60
40
26
20
13
1.89
46864396--46864518
61
2.0
61
90
0
192
39
17
23
18
1.92
46864457--46864561
46
2.3
46
88
3
149
43
16
22
17
1.87
46864350--46864561
107
2.0
107
86
1
300
40
16
23
19
1.91
46869099--46869219
26
4.7
26
95
0
206
33
9
23
34
1.86
46870832--46870969
54
2.5
53
89
2
195
18
22
22
36
1.95
46870832--46870987
27
5.8
27
80
13
162
19
23
21
36
1.95
46876707--46876777
34
2.1
34
100
0
142
43
16
8
30
1.78
46877639--46877682
22
2.0
22
95
0
79
38
29
0
31
1.58
46879682--46879709
14
2.0
14
100
0
56
35
7
14
42
1.73
46882833--46882867
4
8.8
4
100
0
70
25
0
25
48
1.51
46882829--46882876
12
4.0
12
91
0
69
25
6
25
43
1.77
46885920--46885973
26
2.1
26
86
6
74
46
7
3
42
1.49
46885927--46885979
26
2.0
26
89
7
81
49
3
3
43
1.38
46887939--46888055
39
3.0
39
84
0
135
29
27
11
31
1.92
46894651--46894695
22
2.0
22
91
0
72
33
2
15
48
1.57
46898421--46898465
22
2.0
22
91
0
72
33
2
15
48
1.57
46899160--46899195
3
12.0
3
93
0
63
63
0
2
33
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46901536--46901655
64
1.9
64
89
0
186
27
30
1
40
1.66
46908693--46908971
95
2.9
95
86
3
411
35
16
15
32
1.90
46915794--46916302
47
10.7
47
94
2
849
32
8
29
29
1.87
46915794--46916302
190
2.7
189
92
2
851
32
8
29
29
1.87
46915794--46916302
143
3.6
143
94
1
866
32
8
29
29
1.87
46916421--46916499
37
2.1
37
88
0
113
24
17
31
26
1.97
46917259--46917301
20
2.2
20
91
0
68
20
30
27
20
1.98
46918180--46918234
17
2.7
22
65
26
57
43
20
5
30
1.74
46924173--46924229
28
2.0
28
100
0
114
35
3
14
47
1.61
46932730--46932909
27
6.7
27
92
1
245
30
24
6
39
1.79
46932945--46933095
27
5.6
27
84
6
191
42
22
5
29
1.77
46932912--46933067
54
2.9
54
85
3
172
40
20
8
30
1.83
46932945--46933094
81
1.9
81
86
8
216
42
22
6
29
1.77
46932945--46933150
54
3.8
54
77
12
163
42
20
6
30
1.78
46933073--46933158
27
3.1
27
76
17
86
39
15
9
36
1.79
46934078--46934252
52
3.4
52
92
1
282
29
22
20
27
1.99
46934078--46934252
26
6.8
26
86
0
228
29
22
20
27
1.99
46934397--46934488
42
2.2
42
92
0
148
29
14
21
34
1.93
46934512--46934590
31
2.5
31
91
0
131
30
18
25
25
1.98
46936839--46936875
19
1.9
19
94
0
65
16
8
21
54
1.68
46938689--46938840
27
5.6
27
92
3
241
26
13
28
31
1.93
46938689--46938840
55
2.8
55
93
0
259
26
13
28
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46943949--46944097
60
2.5
62
82
7
164
25
26
19
28
1.99
46944090--46944135
20
2.3
20
82
14
60
28
28
17
26
1.98
46944102--46944144
19
2.2
20
83
4
52
34
25
18
20
1.96
46947889--46948022
60
2.2
63
81
9
170
26
27
18
26
1.98
46947905--46948051
60
2.4
59
80
9
147
25
25
19
28
1.99
46951782--46951941
43
3.7
42
78
11
164
23
18
26
31
1.97
46954987--46955162
46
3.8
46
75
14
164
23
20
25
30
1.99
46954983--46955154
93
1.8
93
87
2
256
23
20
26
29
1.99
46962678--46962713
16
2.2
16
90
0
54
50
13
22
13
1.77
46962930--46962996
29
2.3
29
85
7
84
26
14
29
28
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345