genome.fa.s6.2.7.7.80.10.50.1000.308.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  308  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104156756--104157108	45	7.8	45	86	0	436	36	15	20	27	1.93
104156711--104157111	90	4.5	90	84	0	462	37	15	20	26	1.93
104156717--104157151	135	3.2	133	81	3	478	37	15	20	26	1.93
104163349--104163505	38	4.1	38	93	0	269	37	24	21	15	1.93
104167702--104167790	45	2.0	45	97	0	169	35	24	4	34	1.76
104173447--104173535	45	1.9	47	81	4	110	40	15	21	22	1.91
104184193--104184225	5	6.6	5	100	0	66	60	21	0	18	1.36
104185177--104185216	21	2.0	20	90	5	62	42	22	0	35	1.54
104190303--104190327	13	1.9	13	100	0	50	64	8	4	24	1.38
104199083--104199125	16	2.6	16	85	7	50	20	4	2	72	1.14
104206966--104207022	15	3.7	15	80	13	53	75	0	3	21	0.95
104214048--104214099	22	2.4	22	93	0	86	42	26	19	11	1.85
104214302--104214366	22	3.0	22	75	8	69	30	21	26	21	1.98
104214520--104214631	41	2.7	41	90	0	179	26	28	22	22	1.99
104214888--104215187	27	11.1	27	72	9	150	31	9	19	39	1.84
104214896--104215104	54	3.9	54	75	8	183	29	7	20	42	1.80
104214926--104215133	54	3.8	54	78	8	183	28	7	21	42	1.80
104214888--104215078	82	2.3	82	78	7	219	30	8	18	41	1.81
104215007--104215157	81	1.9	80	82	6	189	30	7	21	39	1.82
104215165--104215235	27	2.6	27	88	0	106	30	18	18	32	1.95
104215185--104215248	27	2.4	27	83	0	74	31	25	17	26	1.97
104230269--104230456	94	2.0	94	89	2	288	35	18	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104232170--104232424	55	4.8	52	78	10	209	35	18	24	21	1.95
104232170--104232377	55	3.8	53	79	8	224	34	17	25	22	1.96
104232616--104232646	16	1.9	16	93	0	53	41	0	22	35	1.54
104235990--104236051	31	2.0	31	87	9	90	37	4	9	48	1.57
104236937--104237022	39	2.2	39	91	0	136	29	10	15	45	1.79
104238963--104238992	15	1.9	16	93	6	53	30	10	6	53	1.60
104240574--104240608	12	2.9	12	86	0	52	60	0	22	17	1.37
104240574--104240608	18	1.9	18	94	0	61	60	0	22	17	1.37
104243041--104243161	58	2.1	59	87	6	176	26	18	7	47	1.74
104243149--104243187	9	4.2	9	86	3	51	15	30	0	53	1.42
104245082--104245205	62	2.0	62	96	0	230	31	13	15	39	1.86
104249728--104249758	16	1.9	16	93	0	53	41	0	6	51	1.27
104251767--104251801	18	1.9	18	88	0	52	20	2	71	5	1.19
104251988--104252026	9	4.3	9	83	0	51	12	0	64	23	1.28
104252100--104252143	6	7.3	6	89	0	61	11	0	70	18	1.16
104252448--104252488	3	13.7	3	89	0	64	2	0	70	26	0.99
104252605--104252640	18	2.0	18	88	0	54	22	2	63	11	1.39
104260814--104260857	20	2.2	20	100	0	88	43	0	27	29	1.55
104264442--104264578	71	1.9	71	93	0	238	45	10	11	32	1.74
104266621--104266678	27	2.2	28	80	20	72	1	27	0	70	0.97
104267893--104267951	29	2.0	29	87	6	84	20	23	28	27	1.99
104269198--104269251	24	2.3	23	83	3	72	40	29	18	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104269362--104269416	23	2.4	23	81	0	74	32	14	30	21	1.93
104269408--104269474	27	2.5	27	87	0	89	41	19	22	16	1.90
104269413--104269481	27	2.6	26	84	6	84	43	18	21	15	1.88
104270884--104271151	47	5.7	45	73	10	182	29	18	28	23	1.97
104286377--104286430	24	2.3	24	83	3	74	37	25	24	12	1.91
104286566--104286632	27	2.5	28	78	7	75	43	19	19	17	1.89
104295044--104295082	17	2.4	17	87	8	55	25	5	5	64	1.35
104297457--104297518	32	1.9	32	96	0	115	50	9	16	24	1.75
104298875--104298912	3	12.7	3	100	0	76	34	0	0	65	0.93
104298911--104298951	3	13.7	3	84	0	55	34	24	0	41	1.55
104298908--104298951	12	3.7	12	90	0	70	34	22	0	43	1.54
104312553--104312693	55	2.6	55	96	1	257	24	17	26	31	1.97
104321394--104321451	24	2.4	24	91	0	98	17	13	15	53	1.73
104324633--104324667	18	1.9	18	88	0	52	17	8	2	71	1.23
104325989--104326022	16	2.1	16	88	0	50	47	5	20	26	1.73
104332185--104332224	20	2.1	18	86	9	53	7	30	12	50	1.68
104336041--104336184	55	2.6	55	75	4	164	14	25	31	28	1.95
104345181--104345388	67	3.2	64	77	10	197	31	16	29	22	1.96
104349288--104349313	13	2.0	13	100	0	52	15	30	38	15	1.88
104351797--104351925	63	2.0	64	94	4	226	36	13	15	34	1.86
104358341--104358518	27	6.6	27	84	3	205	29	28	15	26	1.96
104358362--104358517	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104366404--104366581	27	6.6	27	84	3	205	29	28	15	26	1.96
104366425--104366580	82	1.9	81	88	3	233	29	28	15	26	1.96
104373732--104373791	3	19.3	3	73	13	50	28	1	5	65	1.23
104373729--104373791	22	3.0	22	76	19	71	26	3	4	65	1.28
104373732--104373789	16	3.8	16	74	17	52	27	1	5	65	1.23
104373826--104373909	31	2.7	29	71	23	73	16	11	3	67	1.35
104375321--104375370	6	8.3	6	81	14	59	16	6	0	78	0.95
104381699--104381825	45	2.8	45	83	1	157	31	29	14	25	1.94
104382625--104382755	65	2.0	65	87	0	190	48	7	21	22	1.75
104383035--104383084	17	2.9	17	79	5	57	2	14	4	80	0.95
104388800--104388841	17	2.4	18	88	4	59	71	9	4	14	1.28
104395294--104395395	40	2.5	40	82	0	123	32	23	12	31	1.92
104395453--104395546	37	2.5	37	75	13	95	38	18	15	27	1.91
104400029--104400143	29	4.0	29	74	1	106	29	13	31	25	1.94
104406205--104406236	16	2.0	16	100	0	64	50	31	6	12	1.65
104407412--104407511	29	3.5	30	76	9	84	28	15	33	24	1.95
104407786--104407838	27	2.0	27	85	3	72	47	20	15	16	1.83
104410299--104410346	23	2.1	23	84	7	62	41	16	12	29	1.85
104417489--104417539	15	3.5	14	84	7	50	45	0	1	52	1.12
104418360--104418400	19	2.2	19	100	0	82	41	17	14	26	1.88
104425862--104425933	19	3.9	19	87	8	114	36	13	12	37	1.83
104425865--104425941	36	2.2	35	84	11	95	37	11	14	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104425865--104425941	19	4.3	19	84	11	83	37	11	14	36	1.82
104426297--104426470	45	3.9	44	85	5	188	26	29	13	30	1.94
104426297--104426463	89	1.9	90	87	1	246	26	29	13	29	1.94
104426494--104426788	78	3.8	78	91	1	484	25	24	18	31	1.98
104431538--104431626	19	4.8	19	90	8	148	38	14	11	35	1.82
104431538--104431626	35	2.4	37	88	9	146	38	14	11	35	1.82
104431745--104431784	21	2.0	20	85	5	53	10	2	15	72	1.21
104435807--104435900	23	4.1	23	85	0	134	47	4	25	22	1.69
104440309--104440402	23	4.1	23	85	0	134	47	4	25	22	1.69
104441561--104441612	24	2.2	24	96	0	95	48	5	0	46	1.26
104444464--104444566	43	2.4	43	88	0	152	37	24	15	22	1.93
104445031--104445072	18	2.4	18	84	7	61	30	4	0	64	1.14
104453995--104454022	6	4.7	6	100	0	56	50	14	0	35	1.43
104455745--104456208	199	2.3	198	84	4	608	28	10	14	46	1.77
104455735--104456208	203	2.4	201	83	5	625	28	10	14	46	1.77
104471464--104471533	35	2.0	35	100	0	140	25	8	8	57	1.57
104472480--104472574	40	2.4	40	80	0	100	27	28	17	26	1.98
104473089--104473140	22	2.5	19	76	14	50	38	17	7	36	1.78
104482205--104482243	11	3.4	11	86	10	51	33	23	0	43	1.54
104482418--104482468	20	2.5	20	100	0	102	43	21	17	17	1.88
104482874--104482960	40	2.2	40	83	4	104	40	17	8	34	1.79
104483815--104483856	16	2.8	16	89	7	61	40	4	0	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104488882--104488957	27	2.8	27	75	11	66	28	18	19	32	1.96
104492303--104492387	37	2.3	37	91	4	136	15	17	25	41	1.89
104495068--104495293	48	4.8	48	75	11	225	27	24	19	27	1.99
104499459--104499503	22	2.0	22	100	0	90	53	22	4	20	1.63
104500076--104500262	48	3.9	48	93	0	320	21	26	22	29	1.99
104507804--104507859	25	2.2	26	78	9	62	48	8	3	39	1.52
104509575--104509607	3	11.3	3	93	6	59	69	0	0	30	0.88
104524979--104525008	13	2.3	13	94	0	51	53	0	30	16	1.44
104526638--104526662	13	1.9	13	100	0	50	60	16	8	16	1.58
104528104--104528132	6	4.8	6	100	0	58	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345