genome.fa.s6.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  163  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55895709--55895745	12	3.1	12	92	0	56	48	13	2	35	1.57
55899276--55899354	37	2.1	37	90	0	122	25	31	18	24	1.98
55899473--55899879	47	8.6	47	95	2	706	28	29	8	32	1.87
55899473--55899879	96	4.3	94	94	2	706	28	29	8	32	1.87
55899473--55899879	143	2.9	143	96	0	728	28	29	8	32	1.87
55900106--55900204	40	2.5	40	86	3	128	27	27	22	23	1.99
55904905--55904932	3	9.3	3	100	0	56	32	0	0	67	0.91
55908221--55908372	50	3.2	50	87	9	219	26	24	13	35	1.93
55912605--55912809	50	4.2	50	93	2	337	26	24	13	35	1.93
55930152--55930195	22	2.0	22	86	0	61	56	9	2	31	1.43
55931699--55931755	30	1.9	30	100	0	114	24	17	24	33	1.96
55937799--55937863	30	2.2	29	94	2	112	24	15	23	36	1.93
55940265--55940359	49	1.9	49	82	4	120	28	20	9	42	1.83
55941608--55941640	16	2.1	16	100	0	66	18	30	0	51	1.46
55964787--55965055	48	5.6	48	80	6	285	23	28	20	26	1.99
55964787--55965068	96	2.9	96	87	1	350	24	28	20	26	1.99
55964787--55965055	144	1.9	143	83	4	353	23	28	20	26	1.99
55972545--55972770	48	4.7	48	81	6	233	22	29	21	26	1.99
55972593--55972770	96	1.9	96	86	0	257	21	28	22	26	1.99
55991391--55991469	38	2.1	38	97	0	149	36	7	22	32	1.83
55996831--55996940	52	2.1	52	81	6	125	38	17	24	20	1.93
55998593--55998683	29	3.2	29	90	1	139	28	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55998893--55998922	8	3.8	8	90	0	51	3	10	26	60	1.45
55998893--55998927	16	2.2	16	94	0	61	5	8	25	60	1.49
56000044--56000100	28	2.0	28	100	0	114	35	33	7	24	1.82
56003029--56003148	57	2.1	59	78	9	131	28	32	15	23	1.95
56003052--56003168	29	4.1	28	88	3	153	27	31	14	26	1.95
56004967--56005008	21	2.0	21	85	4	57	33	19	7	40	1.78
56009299--56009430	50	2.6	52	83	8	180	34	15	12	38	1.84
56022797--56022876	15	5.4	15	76	10	76	60	13	15	11	1.60
56022808--56022885	15	5.2	15	80	9	79	57	15	14	12	1.65
56025812--56025982	93	1.8	93	91	0	279	28	28	21	22	1.99
56025804--56025979	46	3.8	45	78	10	185	28	27	21	22	1.99
56027463--56027562	28	3.5	29	80	9	116	27	16	28	29	1.97
56032670--56032770	52	2.0	52	84	5	134	18	22	10	47	1.80
56033344--56033394	24	2.1	24	88	0	75	52	15	19	11	1.73
56033627--56033715	29	3.1	29	77	7	101	25	13	31	29	1.94
56036615--56036666	27	2.0	26	84	3	68	28	23	17	30	1.97
56037264--56037315	27	2.0	26	84	3	68	17	26	21	34	1.95
56037353--56037412	27	2.3	26	82	2	75	21	21	20	36	1.95
56044405--56044578	46	3.7	48	80	6	180	22	32	18	26	1.97
56044405--56044626	94	2.4	91	81	10	236	23	30	18	27	1.98
56057257--56057541	50	5.7	50	78	4	272	31	25	16	26	1.97
56057257--56057549	101	2.9	99	77	4	311	31	24	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56060074--56060270	50	3.9	50	83	1	234	29	26	18	25	1.98
56060075--56060270	101	2.0	99	85	2	266	29	26	18	25	1.98
56070222--56070260	21	1.9	19	85	10	51	28	15	5	51	1.64
56072735--56072859	39	3.2	39	89	2	178	45	10	8	36	1.68
56072962--56073051	39	2.3	39	94	1	155	44	7	7	40	1.62
56075539--56075608	27	2.6	26	95	2	95	31	28	12	27	1.93
56075539--56075636	28	3.5	28	90	2	135	31	28	13	26	1.94
56083612--56083709	28	3.5	28	88	2	126	32	28	12	26	1.92
56085912--56085939	14	2.0	14	100	0	56	42	7	0	50	1.30
56089401--56089583	40	4.6	39	80	9	192	25	20	27	26	1.99
56089433--56089606	79	2.2	78	79	10	192	27	20	25	27	1.99
56098580--56098633	22	2.5	21	75	3	54	14	31	35	18	1.91
56103351--56103449	42	2.3	42	81	5	110	32	23	18	26	1.97
56103374--56103474	42	2.3	41	78	9	96	32	26	19	20	1.97
56110543--56110576	17	2.0	17	100	0	68	52	5	23	17	1.66
56118407--56118520	43	2.7	42	85	6	149	30	25	18	25	1.98
56119660--56119694	13	2.7	13	100	0	70	40	14	5	40	1.69
56136768--56136930	43	3.8	42	80	9	161	33	25	15	24	1.95
56137870--56138000	45	3.0	45	91	4	196	25	28	22	23	1.99
56141759--56141800	21	2.0	20	86	4	57	50	23	2	23	1.61
56144589--56144730	71	2.0	71	98	0	275	29	10	20	39	1.86
56145430--56145454	13	1.9	13	100	0	50	8	40	20	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56150506--56150548	20	2.2	20	100	0	86	16	30	13	39	1.87
56152380--56152604	48	4.7	48	84	0	261	26	19	24	28	1.99
56154494--56154537	20	2.3	18	84	7	52	20	31	34	13	1.92
56156492--56156663	93	1.8	93	94	0	308	27	29	21	21	1.99
56156485--56156660	46	3.8	46	78	12	207	28	28	21	21	1.98
56160883--56161353	190	2.5	191	95	0	845	35	5	26	31	1.81
56160883--56161353	48	9.9	48	91	2	770	35	5	26	31	1.81
56161506--56161580	37	2.0	37	89	0	114	22	17	30	29	1.97
56164883--56164912	16	1.9	16	93	6	53	23	13	33	30	1.93
56166993--56167041	25	2.0	25	95	0	89	12	24	32	30	1.92
56166811--56167168	103	3.5	102	91	5	546	19	18	30	31	1.96
56174139--56174499	102	3.6	103	90	7	553	18	19	30	30	1.96
56181385--56181737	102	3.5	101	88	5	509	18	18	30	32	1.95
56189657--56189840	40	4.7	40	84	7	225	25	28	22	23	1.99
56189659--56189840	79	2.3	79	83	6	217	25	28	22	24	2.00
56197704--56197886	79	2.3	81	84	7	232	25	27	22	24	2.00
56197683--56197886	40	5.1	40	82	8	238	25	27	22	24	2.00
56207559--56207672	43	2.7	42	80	4	131	22	16	28	31	1.96
56211882--56211939	24	2.4	24	100	0	116	36	13	10	39	1.79
56220204--56220282	37	2.1	37	88	4	115	25	30	18	25	1.98
56220401--56220701	47	6.4	47	94	0	503	28	29	8	32	1.88
56228051--56228333	48	5.9	48	76	4	266	22	29	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56228053--56228324	96	2.8	96	82	3	341	22	29	19	28	1.98
56236369--56236593	40	5.7	40	86	5	296	24	22	28	25	2.00
56236369--56236626	119	2.2	119	81	6	283	25	21	27	24	1.99
56241658--56241887	48	4.8	48	73	7	189	21	28	21	28	1.98
56241655--56241890	96	2.5	96	81	2	269	21	28	20	29	1.98
56241869--56241929	31	2.0	31	90	0	95	24	31	14	29	1.95
56241900--56242007	46	2.3	48	85	3	139	24	29	17	28	1.97
56242121--56242155	17	1.9	19	88	11	56	57	11	0	31	1.34
56244412--56244618	53	3.8	54	77	4	211	20	23	18	37	1.94
56253055--56253095	21	2.0	20	85	4	55	39	2	17	41	1.62
56257396--56257789	47	8.4	47	91	0	599	28	30	8	32	1.87
56267451--56267496	22	2.1	21	92	4	74	19	2	4	73	1.10
56267445--56267496	22	2.5	22	87	6	63	17	1	3	76	1.02
56267484--56267538	24	2.3	24	87	0	74	12	1	10	74	1.15
56267533--56267659	22	6.2	20	74	15	98	39	0	1	58	1.13
56267565--56267640	20	3.8	19	83	15	84	36	1	0	61	1.04
56267566--56267658	19	4.5	21	79	14	88	39	1	0	59	1.05
56267533--56267638	42	2.6	42	81	8	114	38	0	1	58	1.15
56267565--56267659	20	4.6	19	74	18	75	38	1	0	60	1.04
56267717--56267778	19	3.0	20	84	13	74	41	0	1	56	1.09
56267757--56267816	13	4.5	13	80	12	59	41	0	1	56	1.09
56267717--56267772	22	2.8	19	86	10	69	41	0	1	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56267774--56267813	15	2.8	14	85	7	53	40	0	2	57	1.12
56267757--56267816	15	4.5	13	76	15	52	41	0	1	56	1.09
56267960--56267988	13	2.1	14	93	6	51	58	0	3	37	1.15
56268181--56268223	14	3.0	14	83	6	59	25	0	4	69	1.07
56270899--56270979	42	1.9	42	87	5	119	24	14	24	35	1.94
56271941--56271973	9	3.7	9	91	0	57	24	12	24	39	1.89
56271939--56271973	18	1.9	18	100	0	70	28	11	22	37	1.89
56272026--56272062	9	4.1	9	92	0	65	45	13	10	29	1.77
56272700--56272745	16	2.6	18	76	16	51	39	10	0	50	1.38
56273085--56273110	5	5.2	5	100	0	52	19	19	19	42	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345