genome.fa.s6.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  155  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52521676--52521792	43	2.7	44	80	10	118	26	25	20	27	1.99
52529825--52530008	48	3.9	47	82	3	224	26	20	28	25	1.99
52529825--52530008	96	1.9	96	87	2	271	26	20	28	25	1.99
52538101--52538125	12	2.1	12	100	0	50	16	8	16	60	1.58
52539899--52540219	89	3.6	89	90	0	489	20	25	14	39	1.91
52539899--52540190	30	9.8	30	72	7	211	20	26	14	39	1.91
52540427--52540470	21	2.0	22	86	4	63	40	15	0	43	1.47
52544249--52544326	30	2.6	30	95	0	138	20	33	7	38	1.81
52544345--52544505	30	5.4	30	72	8	139	22	24	13	39	1.90
52544255--52544505	60	4.2	60	79	3	238	21	26	12	39	1.89
52544717--52544764	21	2.4	19	77	16	51	43	18	0	37	1.51
52548673--52548710	17	2.3	17	95	4	69	52	0	5	42	1.24
52552738--52552882	41	3.4	42	84	12	172	21	17	28	32	1.96
52564603--52564650	25	2.0	24	83	4	60	35	25	16	22	1.95
52564687--52564753	20	3.3	20	89	0	98	35	11	20	31	1.89
52564803--52564884	24	3.4	24	93	1	137	30	18	21	29	1.97
52564803--52564898	24	4.0	25	85	9	128	28	19	22	29	1.98
52567856--52568074	40	5.5	40	89	3	318	24	27	23	24	2.00
52574842--52574889	25	2.0	24	87	4	69	37	25	14	22	1.92
52574926--52574972	20	2.3	20	92	0	76	34	10	23	31	1.89
52575023--52575154	24	5.4	24	90	2	201	31	18	21	28	1.97
52582943--52583009	33	2.0	34	85	8	93	31	16	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52585462--52585492	11	2.8	11	100	0	62	70	19	0	9	1.14
52585916--52586133	46	4.7	45	80	9	210	22	30	19	27	1.98
52585870--52586138	93	2.9	93	74	11	255	23	28	18	28	1.98
52592773--52592911	39	3.6	39	93	3	235	39	24	23	12	1.89
52599413--52599504	46	2.0	46	93	0	157	22	34	18	23	1.96
52601344--52601419	38	2.0	38	100	0	152	39	15	2	42	1.61
52601972--52602025	22	2.6	21	80	8	74	18	27	24	29	1.98
52602312--52603535	410	3.0	410	80	3	1265	30	13	23	32	1.93
52604383--52604472	44	2.0	44	89	0	135	51	3	8	36	1.50
52605260--52605312	6	8.5	6	87	8	79	79	3	0	16	0.88
52612688--52612720	2	16.5	2	93	0	57	51	0	48	0	1.00
52614578--52614618	19	2.2	19	86	0	55	41	2	0	56	1.13
52614474--52614656	93	2.0	94	89	7	284	48	2	1	46	1.26
52614680--52614718	13	2.9	13	88	3	51	61	2	0	35	1.10
52620280--52620421	39	3.6	39	84	3	178	42	22	4	30	1.72
52624831--52625059	48	4.8	48	79	3	228	25	24	19	31	1.98
52624831--52625029	96	2.1	96	88	3	294	24	25	20	29	1.99
52624850--52625059	96	2.2	94	84	7	271	25	23	19	31	1.98
52634927--52635021	41	2.3	41	85	3	120	27	28	21	23	1.99
52638496--52638543	24	2.0	24	100	0	96	20	12	25	41	1.87
52638674--52638775	50	2.0	50	96	0	186	32	13	27	26	1.94
52652330--52652355	13	2.0	13	100	0	52	23	46	23	7	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52660166--52660231	23	2.8	24	74	19	66	22	24	18	34	1.96
52665909--52666070	45	3.5	45	74	9	155	34	20	24	20	1.96
52676992--52677188	54	3.6	54	79	7	220	37	17	22	22	1.94
52682746--52682824	29	2.7	29	92	0	122	25	24	12	37	1.90
52697536--52697630	47	2.0	47	95	0	172	32	18	12	35	1.89
52704556--52704616	32	1.9	31	86	3	86	11	19	6	62	1.50
52709657--52709738	42	2.0	42	82	4	103	24	34	25	15	1.95
52709972--52710021	25	2.0	25	100	0	100	48	28	8	16	1.74
52711072--52711144	37	2.0	37	100	0	146	43	19	2	34	1.65
52713588--52713819	52	4.6	50	76	3	221	33	26	14	25	1.94
52713588--52713821	102	2.3	102	90	0	369	33	26	14	25	1.95
52715721--52715762	20	2.1	20	100	0	84	28	4	28	38	1.77
52718986--52719049	31	2.1	31	90	0	101	21	25	15	37	1.93
52719243--52719360	23	5.0	24	88	5	161	29	20	21	28	1.98
52719410--52719476	20	3.3	20	93	0	116	32	20	11	34	1.90
52719410--52719465	11	5.5	11	71	16	57	32	19	12	35	1.89
52727753--52727899	47	3.1	47	93	0	240	32	11	29	26	1.91
52727779--52727853	22	3.3	22	64	29	57	29	13	32	25	1.93
52728108--52728214	37	2.9	37	90	0	160	23	17	33	25	1.96
52739277--52739453	40	4.4	40	81	4	207	24	22	26	26	2.00
52739681--52739722	22	1.9	22	85	9	59	33	9	14	42	1.78
52744888--52744931	23	2.0	23	86	4	63	45	4	13	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52746352--52746456	27	3.9	27	79	0	93	27	21	20	29	1.98
52747631--52747770	69	2.0	69	95	0	253	35	18	6	40	1.76
52749560--52749595	16	2.3	16	90	4	56	16	0	33	50	1.46
52753294--52753355	31	1.9	33	81	15	76	70	1	3	24	1.10
52754747--52754815	23	3.0	23	85	6	104	27	23	21	27	1.99
52763574--52763634	31	2.0	31	100	0	122	22	26	18	32	1.97
52791793--52791847	23	2.5	22	86	11	78	47	29	3	20	1.67
52793658--52793710	27	1.9	28	84	3	72	20	24	18	35	1.95
52793691--52793773	34	2.4	34	87	0	112	21	25	25	27	1.99
52794481--52794518	16	2.4	16	95	0	67	10	18	13	57	1.63
52797747--52797795	18	2.7	18	83	0	53	24	18	12	44	1.84
52800383--52800560	27	6.6	27	79	3	115	28	28	16	26	1.97
52800383--52800560	54	3.3	55	80	10	204	28	28	16	26	1.97
52800404--52800559	82	1.9	81	85	3	215	28	28	16	26	1.97
52808427--52808605	27	6.6	27	78	5	108	28	28	16	26	1.97
52808427--52808605	55	3.3	55	78	11	197	28	28	16	26	1.97
52811794--52811837	22	2.0	22	86	0	61	54	6	0	38	1.27
52817583--52817744	26	6.2	26	95	0	270	33	5	24	36	1.79
52817583--52817744	78	2.1	78	97	0	306	33	5	24	36	1.79
52819178--52819252	26	2.8	26	85	4	87	34	21	12	32	1.90
52819358--52819503	27	5.4	27	88	0	202	20	25	21	32	1.98
52819369--52819522	54	2.9	54	87	1	193	21	25	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52819358--52819522	27	6.1	28	86	7	173	20	24	21	33	1.97
52829852--52829890	20	2.0	19	85	5	51	46	12	2	38	1.56
52831562--52831586	13	1.9	13	100	0	50	56	0	0	44	0.99
52832085--52832443	176	2.0	176	89	0	556	25	23	16	34	1.96
52833891--52833945	29	1.9	28	85	10	76	23	18	25	32	1.97
52849716--52849740	13	1.9	13	100	0	50	40	0	0	60	0.97
52852439--52852596	42	3.7	42	76	10	142	31	25	20	23	1.98
52855033--52855147	27	4.3	26	86	7	149	34	22	23	19	1.96
52855249--52855312	26	2.4	26	84	2	74	23	12	26	37	1.90
52881627--52881794	31	5.2	33	86	6	174	26	20	26	27	1.99
52881646--52881794	31	4.8	31	89	2	228	26	19	27	26	1.99
52881876--52882035	42	3.7	42	81	6	151	31	13	26	28	1.93
52881876--52882016	42	3.3	42	86	6	158	31	12	26	29	1.93
52882372--52882429	26	2.2	28	81	12	77	37	8	13	39	1.76
52882690--52882740	23	2.2	23	96	0	93	43	5	17	33	1.73
52889486--52889561	27	2.8	27	88	4	100	26	18	19	35	1.95
52889489--52889575	27	3.2	27	85	6	97	27	17	17	37	1.92
52889529--52889921	81	4.9	80	78	7	291	30	9	19	39	1.84
52889594--52889920	27	12.3	27	79	8	339	31	8	19	40	1.82
52889584--52889920	53	6.3	54	82	6	330	30	8	20	40	1.83
52901089--52901224	43	3.2	42	79	9	141	33	24	17	24	1.96
52903923--52904024	28	3.7	28	76	6	82	27	16	29	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52907205--52907383	27	6.6	27	82	5	189	26	15	29	29	1.96
52907205--52907383	54	3.3	55	83	5	220	26	15	29	29	1.96
52923398--52923582	40	4.7	40	82	7	191	24	21	27	25	1.99
52923398--52923582	79	2.3	81	81	9	211	24	21	27	25	1.99
52923435--52923615	79	2.3	79	75	12	174	28	19	26	25	1.99
52925459--52925596	47	2.9	47	81	13	151	23	26	21	28	1.99
52930544--52930663	48	2.4	49	86	8	156	24	31	16	27	1.96
52930639--52930753	46	2.5	44	86	6	151	23	30	20	26	1.98
52934980--52935070	45	2.0	45	97	0	173	38	16	4	40	1.68
52944270--52944497	40	5.7	41	78	5	173	19	27	16	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345