genome.fa.s6.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  134  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45382586--45382617	13	2.5	13	100	0	64	6	34	40	18	1.76
45382981--45383024	20	2.2	20	84	12	54	29	6	11	52	1.63
45387701--45387915	46	4.7	44	75	11	157	26	21	29	22	1.99
45388534--45388569	16	2.2	16	100	0	72	50	16	19	13	1.79
45397529--45397635	28	3.8	28	92	0	169	29	24	10	35	1.88
45402289--45402326	19	2.0	19	89	0	58	42	15	21	21	1.89
45412398--45412495	23	4.3	23	90	2	162	31	26	21	20	1.98
45412405--45412493	45	2.0	45	95	0	160	31	26	22	19	1.97
45416850--45417022	46	3.7	46	78	13	210	21	21	27	28	1.99
45416847--45417017	93	1.8	93	96	0	315	21	21	28	28	1.99
45424361--45424531	46	3.8	44	80	11	220	22	21	27	29	1.99
45437609--45437657	25	1.9	25	91	4	80	30	30	24	14	1.94
45437575--45437823	100	2.5	102	88	9	352	30	27	21	19	1.98
45447977--45448538	27	21.1	26	79	11	502	27	20	9	42	1.83
45447977--45448538	54	10.6	54	83	6	574	27	20	9	42	1.83
45447977--45448550	108	5.4	108	85	5	722	28	20	9	41	1.83
45448543--45448737	27	7.2	27	82	3	214	36	17	18	26	1.94
45448543--45448738	54	3.6	54	84	4	243	36	18	18	26	1.94
45448543--45448736	81	2.4	81	87	0	262	36	17	19	26	1.94
45448937--45449019	27	3.1	26	86	5	94	19	20	21	38	1.93
45449107--45449165	22	2.7	22	81	0	64	20	25	22	32	1.98
45449345--45449403	27	2.2	26	82	5	73	16	20	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45449521--45449695	6	28.8	6	75	17	157	20	16	14	49	1.80
45449555--45449695	24	5.8	24	83	6	178	19	16	14	49	1.79
45449558--45449695	73	1.9	73	96	0	258	20	15	13	50	1.78
45449588--45449716	30	4.3	30	77	14	106	19	16	13	50	1.78
45456040--45456068	15	2.0	15	93	6	51	62	0	31	6	1.22
45456045--45456099	25	2.1	27	84	15	73	69	0	27	3	1.05
45462457--45462516	20	2.8	20	87	7	75	26	20	15	38	1.91
45472889--45472952	34	1.9	33	90	3	101	18	23	26	31	1.98
45475241--45475283	22	2.0	21	90	4	68	44	0	2	53	1.13
45477779--45478002	79	2.8	78	83	6	272	25	27	22	25	2.00
45477779--45478002	40	5.7	40	86	6	271	25	27	22	25	2.00
45483096--45483214	42	2.8	44	74	15	115	23	19	25	31	1.98
45487044--45487110	33	2.0	33	97	0	125	41	11	7	38	1.70
45490467--45490613	40	3.7	40	83	5	120	25	27	21	25	2.00
45490513--45490693	80	2.3	80	83	9	219	27	27	20	23	1.99
45490510--45490693	40	4.6	40	81	7	196	28	27	20	23	1.99
45493773--45493977	102	2.0	102	96	1	376	39	14	19	26	1.90
45495693--45495762	34	2.1	34	100	0	140	48	0	18	32	1.48
45500394--45500481	44	2.0	44	100	0	176	36	22	18	22	1.95
45503035--45503095	25	2.4	27	76	13	67	36	3	1	59	1.24
45505886--45505937	22	2.4	22	83	6	61	46	1	1	50	1.23
45505895--45505939	22	2.0	22	91	0	72	42	2	2	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45507499--45507525	14	1.9	14	100	0	54	25	29	0	44	1.54
45511281--45511311	16	1.9	16	93	0	53	35	22	0	41	1.54
45511278--45511317	20	2.0	20	85	0	53	37	22	0	40	1.54
45511549--45511756	55	3.8	53	77	7	197	23	25	15	35	1.94
45514671--45514711	19	2.0	20	86	9	57	41	14	0	43	1.45
45515492--45515539	24	2.0	24	87	0	69	25	22	22	29	1.99
45518810--45518981	27	6.4	26	85	1	173	25	13	16	44	1.85
45518810--45518990	54	3.4	53	82	5	202	24	15	16	43	1.87
45518810--45518990	81	2.2	81	83	2	229	24	15	16	43	1.87
45522664--45522845	82	2.2	81	88	2	258	26	13	16	42	1.86
45522664--45522845	27	6.7	27	82	2	213	26	13	16	42	1.86
45523287--45523339	24	2.2	24	80	6	63	32	0	45	22	1.53
45523405--45523437	17	1.9	17	88	11	50	24	9	36	30	1.86
45524593--45524692	27	3.8	25	79	11	110	43	21	17	19	1.89
45526089--45526133	18	2.5	18	85	0	54	24	24	8	42	1.83
45541915--45541980	27	2.4	27	82	5	80	30	19	15	34	1.93
45549850--45550073	47	4.8	46	80	8	202	23	29	20	27	1.99
45552016--45552196	49	3.7	49	84	5	238	27	18	23	31	1.97
45552017--45552197	100	1.8	100	92	0	308	27	18	22	32	1.97
45559487--45559605	55	2.2	55	84	0	166	26	32	20	21	1.97
45560485--45560641	46	3.4	46	77	11	169	25	28	18	28	1.98
45566695--45566747	28	2.0	27	92	7	90	37	22	24	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45566689--45566755	28	2.5	26	79	16	82	40	20	20	17	1.92
45570791--45570853	29	2.2	29	80	5	76	34	30	11	23	1.90
45578330--45578455	44	2.9	43	81	6	155	30	26	17	25	1.97
45579512--45579536	13	1.9	13	100	0	50	40	24	4	32	1.73
45580926--45580963	20	1.9	20	100	0	76	26	7	18	47	1.76
45581420--45581486	20	3.3	20	87	0	98	31	13	22	32	1.92
45581537--45581632	47	2.1	47	94	2	167	27	18	20	33	1.96
45581536--45581653	23	5.0	24	86	5	152	27	19	22	31	1.98
45581847--45581906	31	1.9	31	93	0	102	35	16	21	26	1.95
45606167--45606417	107	2.4	110	79	9	290	36	18	23	21	1.95
45607583--45607609	13	2.1	13	100	0	54	14	37	33	14	1.88
45607933--45607963	16	1.9	16	93	0	53	41	0	22	35	1.54
45631961--45632117	43	3.7	43	78	5	158	31	24	17	26	1.97
45635061--45635165	45	2.4	45	79	6	110	28	30	19	21	1.97
45635484--45635513	15	2.0	15	93	0	51	50	13	0	36	1.42
45647282--45647321	19	2.1	19	100	0	80	37	10	12	40	1.77
45660101--45660143	18	2.4	18	81	14	61	46	4	9	39	1.57
45660582--45660678	27	3.5	28	87	5	99	26	13	26	32	1.93
45660611--45660678	27	2.5	28	95	2	120	26	13	27	32	1.93
45660611--45660692	27	2.9	27	87	5	92	29	12	24	34	1.91
45662279--45662486	92	2.2	93	83	5	260	27	19	28	25	1.98
45662277--45662486	46	4.5	45	80	7	215	27	19	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45665337--45665594	40	6.5	40	86	5	330	22	21	29	26	1.99
45673310--45673562	46	5.4	46	74	11	187	28	18	28	24	1.98
45673355--45673622	46	5.8	45	75	10	175	27	17	30	24	1.97
45679971--45680011	21	1.9	22	85	5	57	46	7	14	31	1.72
45680952--45681215	47	5.7	47	81	6	288	27	17	31	23	1.97
45680952--45681215	140	1.9	140	84	4	354	27	17	31	23	1.97
45690823--45691034	47	4.5	45	78	9	158	26	19	28	25	1.99
45690864--45691034	47	3.7	46	80	8	179	26	18	28	25	1.98
45691463--45691495	13	2.4	14	90	5	50	33	0	3	63	1.10
45692593--45693034	50	8.8	50	77	3	368	27	16	26	30	1.97
45692642--45693031	151	2.6	149	90	1	584	26	17	26	28	1.98
45702839--45703229	50	7.7	50	74	9	317	26	17	26	29	1.97
45702844--45703127	51	5.6	50	73	10	186	26	18	25	29	1.98
45702840--45703178	101	3.4	99	78	7	299	27	17	25	29	1.98
45702843--45703238	152	2.6	151	87	2	551	26	17	26	29	1.98
45712027--45712407	50	7.7	50	75	9	294	25	18	25	30	1.98
45712178--45712359	101	1.8	101	86	0	265	26	18	25	29	1.98
45712030--45712420	151	2.6	148	85	1	505	26	18	25	29	1.98
45722368--45722409	13	3.2	13	86	10	50	66	0	7	26	1.17
45724694--45724726	16	2.1	16	94	5	59	30	45	6	18	1.73
45726093--45726283	40	4.8	39	88	2	247	22	27	24	25	2.00
45745710--45745821	29	3.9	29	72	1	91	26	28	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45746631--45746674	17	2.5	18	78	14	56	70	0	22	6	1.11
45749518--45749659	57	2.5	58	82	9	175	29	23	19	28	1.98
45749911--45749947	17	2.2	17	100	0	74	16	24	27	32	1.96
45750281--45750314	9	3.7	9	84	7	50	41	5	8	44	1.60
45750276--45750314	19	2.1	19	100	0	78	43	5	10	41	1.61
45752513--45752538	13	2.0	13	100	0	52	69	15	0	15	1.20
45754659--45754695	19	1.9	19	100	0	74	48	18	16	16	1.81
45761309--45761546	118	2.0	118	98	0	458	24	22	15	37	1.93
45763642--45763672	16	1.9	16	93	0	53	25	29	0	45	1.54
45767807--45767831	8	3.1	8	100	0	50	24	40	12	24	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345