Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  330  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110547854--110547912
12
5.2
11
73
20
50
64
0
3
32
1.10
110547855--110547903
15
3.1
15
82
11
53
63
0
4
32
1.13
110548450--110548479
13
2.3
13
100
0
60
10
63
20
6
1.47
110549050--110549106
23
2.5
23
94
0
96
17
1
36
43
1.60
110573958--110574008
25
2.0
25
100
0
102
33
7
15
43
1.76
110582693--110582729
6
6.2
6
96
0
65
32
32
0
35
1.58
110585685--110585718
7
4.9
7
100
0
68
44
0
0
55
0.99
110591665--110591735
22
3.1
21
76
21
72
42
0
1
56
1.08
110591671--110591720
12
3.8
13
73
19
50
42
0
2
56
1.11
110591687--110591823
34
3.9
34
76
17
120
36
0
1
61
1.10
110591701--110591742
21
2.0
22
86
9
61
40
0
2
57
1.12
110591732--110591774
22
2.0
22
86
4
61
34
2
2
60
1.22
110591754--110591796
14
2.9
14
86
6
50
30
0
2
67
1.03
110591829--110591895
17
4.0
16
73
19
57
55
0
4
40
1.20
110591840--110591895
16
3.4
16
76
9
67
58
0
1
39
1.08
110591832--110591897
34
1.9
34
96
0
123
57
0
4
37
1.19
110591842--110591899
18
3.3
18
76
9
75
62
0
1
36
1.06
110591878--110591918
21
2.0
22
90
9
68
63
0
0
36
0.95
110591844--110591954
52
2.1
51
82
11
127
58
0
1
38
1.15
110591944--110592009
22
2.9
24
82
15
77
60
0
0
39
0.97
110591928--110591986
15
4.4
14
76
20
63
61
0
0
38
0.96
110591935--110592010
26
3.1
25
80
14
88
60
0
0
39
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110593890--110593931
16
2.6
17
85
7
52
54
0
0
45
0.99
110593876--110593940
26
2.5
27
75
9
73
44
0
0
55
0.99
110596394--110596451
29
2.0
29
86
0
80
34
13
15
36
1.87
110601064--110601231
54
3.1
54
83
0
156
16
41
3
39
1.65
110601114--110601359
66
3.7
66
81
0
276
15
39
3
41
1.65
110601116--110601388
30
9.1
30
75
0
170
15
39
3
41
1.64
110601083--110601384
36
8.4
36
74
10
161
16
39
3
40
1.65
110601083--110601384
54
5.8
54
76
9
243
16
39
3
40
1.65
110601083--110601384
6
50.3
6
68
2
131
16
39
3
40
1.65
110603126--110603157
10
3.4
10
83
16
50
40
0
0
59
0.97
110606080--110606118
18
2.1
19
90
4
62
46
15
17
20
1.84
110606600--110606629
15
1.9
16
93
6
53
50
10
0
40
1.36
110608035--110608082
25
2.0
23
88
8
69
27
8
4
60
1.44
110608036--110608094
25
2.3
24
77
11
64
28
5
3
62
1.32
110608151--110608219
29
2.5
27
81
9
77
31
4
1
62
1.24
110608266--110608362
26
3.7
26
77
13
74
32
4
4
58
1.36
110609763--110609818
20
2.9
19
82
7
60
7
8
8
75
1.21
110609916--110609964
22
2.3
22
86
13
68
61
2
0
36
1.08
110610872--110610909
20
1.9
20
84
10
51
42
13
23
21
1.88
110612809--110613026
46
4.7
46
93
1
339
39
14
24
22
1.91
110617897--110617953
29
2.0
29
82
6
71
22
12
33
31
1.91
110621104--110621137
13
2.6
14
86
13
54
61
0
23
14
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110624973--110625000
10
2.8
10
100
0
56
60
0
7
32
1.24
110629122--110629395
6
45.7
6
81
0
161
16
38
2
42
1.63
110629123--110629389
18
14.8
18
75
0
192
16
39
2
41
1.63
110629122--110629349
48
5.0
48
80
13
230
15
39
3
41
1.64
110629189--110629366
48
3.7
48
91
0
257
15
42
3
38
1.66
110629375--110629435
30
2.0
30
100
0
122
16
32
3
47
1.63
110629192--110629415
42
5.3
42
78
2
225
16
40
3
39
1.66
110629500--110629532
17
1.9
17
88
11
50
60
0
21
18
1.36
110630312--110630387
21
3.7
21
68
19
61
36
3
1
57
1.25
110630373--110630426
20
2.8
20
83
5
67
35
5
0
59
1.21
110630494--110630541
18
2.7
18
84
15
64
27
6
0
66
1.15
110630549--110630595
9
5.3
9
82
12
53
25
0
4
70
1.05
110631442--110631554
40
2.9
39
77
13
108
34
4
1
59
1.28
110631473--110631546
30
2.5
30
78
12
82
35
2
1
60
1.19
110631670--110631740
8
8.2
8
73
23
56
30
0
1
67
0.99
110631675--110631751
26
2.9
26
79
9
93
32
0
1
66
1.00
110631675--110631745
17
4.1
17
77
20
67
30
0
1
67
0.99
110633879--110633909
11
2.8
11
90
0
53
32
0
0
67
0.91
110634033--110634094
30
2.1
30
96
0
115
58
14
3
24
1.51
110634124--110634166
22
2.0
22
85
0
59
55
9
13
20
1.66
110634131--110634179
22
2.2
22
82
7
55
57
6
18
18
1.61
110634535--110634600
32
2.1
32
100
0
132
45
9
3
42
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110643929--110643976
3
16.0
3
87
8
71
64
0
4
31
1.12
110644055--110644291
3
79.3
3
69
15
125
62
4
6
26
1.37
110644067--110644139
23
3.6
20
75
13
60
60
2
5
31
1.34
110644084--110644214
23
5.6
23
73
13
79
61
3
4
29
1.33
110644264--110644314
18
2.9
18
82
8
61
64
3
3
27
1.28
110647191--110647247
30
1.9
30
96
3
107
52
0
5
42
1.24
110648483--110648693
64
3.2
64
62
20
142
30
26
17
26
1.97
110648449--110648735
137
2.1
137
97
0
538
31
25
18
24
1.97
110650516--110650623
26
4.2
26
87
0
162
36
23
7
33
1.83
110655475--110655505
12
2.6
12
100
0
62
12
51
25
9
1.70
110656713--110656999
137
2.1
137
95
0
511
32
25
17
24
1.97
110657247--110657299
26
2.0
26
82
13
65
26
15
22
35
1.93
110658777--110658884
26
4.2
26
90
0
162
37
23
6
33
1.80
110658777--110658884
52
2.1
52
92
3
182
37
23
6
33
1.80
110660409--110660439
12
2.6
12
94
0
53
22
0
6
70
1.09
110667674--110667786
27
4.2
26
86
7
154
38
22
23
15
1.92
110667674--110667786
54
2.1
54
90
3
174
38
22
23
15
1.92
110670258--110670310
26
2.0
25
82
13
63
39
22
11
26
1.88
110690522--110690546
7
3.6
7
100
0
50
48
0
0
52
1.00
110694542--110694573
10
3.3
10
95
4
57
62
0
6
31
1.20
110707866--110707897
3
10.7
3
100
0
64
68
0
31
0
0.90
110713025--110713581
189
2.9
187
87
1
772
34
11
33
19
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110714252--110714448
39
5.0
39
81
5
218
35
7
34
23
1.82
110716360--110716390
15
2.1
15
93
0
53
38
6
16
38
1.74
110716711--110716814
52
2.0
53
94
1
183
35
11
11
41
1.78
110728248--110728394
49
3.0
49
80
6
131
59
6
5
29
1.44
110728252--110728394
50
2.9
49
81
5
128
58
6
5
29
1.45
110728278--110728394
50
2.4
49
81
8
130
58
5
5
30
1.44
110728248--110728394
24
6.1
24
73
13
115
59
6
5
29
1.44
110730323--110730353
14
2.2
14
100
0
62
19
0
19
61
1.35
110730850--110730898
20
2.5
20
83
6
55
59
0
8
32
1.27
110731711--110731747
13
2.8
14
84
12
51
16
27
0
56
1.40
110732959--110733026
34
2.0
34
100
0
136
32
14
20
32
1.93
110734433--110734499
33
2.0
33
100
0
134
29
8
11
49
1.70
110738665--110738699
14
2.5
14
100
0
70
25
20
17
37
1.94
110739970--110740025
26
2.2
26
100
0
112
35
26
7
30
1.83
110741439--110741496
23
2.5
23
85
0
89
29
1
5
63
1.25
110741434--110741496
3
19.7
3
79
12
63
30
1
4
63
1.24
110741648--110741675
14
2.0
14
100
0
56
28
7
7
57
1.52
110741642--110741679
20
1.9
20
88
0
58
28
7
5
57
1.49
110741691--110741738
19
2.9
16
80
17
53
14
8
6
70
1.31
110741758--110741815
26
2.3
26
77
19
68
31
5
5
58
1.42
110741931--110741991
27
2.3
26
80
8
68
16
6
3
73
1.17
110743882--110743922
6
6.8
6
94
0
55
41
4
53
0
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110746322--110746368
18
2.7
18
78
15
53
51
2
8
38
1.45
110746700--110746756
30
1.9
30
82
13
73
56
3
12
28
1.52
110747047--110747122
3
24.7
3
74
5
62
64
3
6
25
1.35
110748902--110748931
15
2.0
15
93
0
51
56
10
13
20
1.65
110748917--110749225
75
3.9
76
72
14
232
33
22
16
27
1.96
110748772--110749225
163
2.8
163
85
5
564
33
22
16
27
1.95
110761183--110761229
18
2.7
18
78
15
53
51
2
8
38
1.45
110761563--110761619
30
1.9
30
82
13
73
56
3
12
28
1.52
110761617--110761679
15
4.3
15
70
13
51
60
7
0
31
1.26
110761894--110761978
3
27.7
3
70
4
53
62
3
8
25
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345