genome.fa.s6.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  140  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47277607--47277839	39	6.0	39	91	0	376	21	24	29	24	1.99
47278046--47278072	12	2.2	12	100	0	54	40	7	18	33	1.78
47289647--47289725	34	2.3	35	88	2	115	34	25	16	24	1.95
47291797--47291828	8	4.0	8	100	0	64	50	0	12	37	1.41
47291797--47291836	8	4.8	9	93	3	50	50	0	10	40	1.36
47294511--47294575	33	2.0	33	84	0	85	46	21	10	21	1.82
47295663--47295700	20	1.9	20	88	0	58	44	7	10	36	1.68
47309576--47309609	16	2.1	16	100	0	68	17	0	38	44	1.49
47320393--47320457	22	3.0	22	80	8	78	20	23	23	33	1.97
47320616--47320717	27	3.8	27	87	5	134	18	23	21	36	1.95
47320854--47320973	6	19.3	6	68	19	68	20	17	13	49	1.80
47320854--47320989	31	4.4	31	85	3	150	19	16	13	50	1.78
47324714--47324741	13	2.2	13	100	0	56	25	21	14	39	1.91
47324769--47324842	27	2.7	27	80	0	67	32	22	9	35	1.87
47324794--47324858	27	2.4	27	89	0	103	26	21	9	43	1.82
47324850--47324992	27	5.3	26	70	10	92	37	20	11	30	1.89
47324848--47324991	54	2.7	54	77	5	141	37	20	11	29	1.89
47324890--47325070	54	3.3	54	79	3	175	40	18	8	31	1.82
47324898--47325077	27	6.6	27	76	7	121	38	18	10	32	1.85
47325130--47325221	27	3.4	27	87	3	123	33	19	26	20	1.96
47326024--47326224	26	7.8	26	87	0	280	27	22	22	27	1.99
47326024--47326224	52	3.9	51	90	3	323	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47326369--47326460	42	2.2	42	92	0	148	29	14	21	34	1.93
47326484--47326564	31	2.6	31	92	0	135	30	16	24	28	1.96
47335206--47335249	22	2.0	22	100	0	88	40	22	4	31	1.74
47338719--47338917	98	2.0	99	97	0	373	39	16	17	26	1.90
47346195--47346228	17	2.0	17	100	0	68	29	29	11	29	1.92
47349118--47349157	21	2.0	21	85	5	55	17	25	45	12	1.83
47350461--47350563	51	2.0	51	90	0	161	23	27	18	31	1.97
47352319--47352585	48	5.6	48	83	10	309	25	19	30	25	1.98
47352319--47352585	144	1.9	143	85	9	373	25	19	30	25	1.98
47358808--47358845	19	2.0	20	85	15	53	36	0	23	39	1.55
47364354--47364620	48	5.6	47	79	6	279	24	17	29	28	1.97
47364354--47364615	143	1.8	143	83	11	347	24	17	29	29	1.97
47366069--47366128	30	2.0	30	87	6	86	40	6	25	28	1.80
47375695--47375722	11	2.5	11	100	0	56	53	0	17	28	1.44
47376302--47376582	98	2.9	98	85	7	353	25	19	30	23	1.98
47376309--47376582	50	5.6	50	85	5	343	25	19	31	23	1.98
47377563--47377607	23	1.9	24	90	4	74	24	51	2	22	1.60
47377824--47377876	27	2.0	27	88	0	79	41	20	15	22	1.89
47383792--47383901	46	2.3	46	89	6	159	32	10	30	27	1.89
47383972--47384056	40	2.2	40	84	2	109	17	22	31	28	1.97
47386602--47386917	40	7.9	40	95	0	560	21	22	30	25	1.99
47387081--47387131	25	2.0	25	81	7	59	33	13	31	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47390737--47390845	45	2.3	46	87	7	150	33	10	29	27	1.89
47393322--47393396	38	2.0	38	91	0	123	22	21	26	29	1.99
47393329--47393424	38	2.5	38	84	0	111	22	18	27	31	1.97
47393417--47393519	43	2.4	43	91	3	163	8	24	32	34	1.86
47393454--47393590	71	1.9	71	92	0	229	10	22	32	33	1.89
47393525--47393612	43	2.0	43	91	0	140	12	22	35	29	1.91
47419546--47419784	50	4.8	50	82	1	266	25	28	16	29	1.97
47430748--47430789	20	2.1	20	86	8	59	40	9	11	38	1.75
47433936--47434119	79	2.3	81	83	8	227	25	27	22	24	2.00
47433917--47434119	39	5.1	40	81	9	229	24	27	22	25	2.00
47441667--47441851	79	2.3	82	83	7	229	24	27	22	24	2.00
47441648--47441851	40	5.1	40	81	8	229	24	27	22	25	2.00
47444667--47444708	5	8.6	5	80	15	52	61	2	0	35	1.09
47444667--47444717	13	3.7	13	80	14	57	60	3	0	35	1.15
47466300--47466445	43	3.4	43	79	12	133	28	13	24	32	1.94
47467914--47469190	635	2.0	635	99	0	2527	29	20	20	29	1.98
47472146--47472184	10	3.9	10	86	0	51	61	10	0	28	1.28
47480574--47480629	29	1.9	29	100	0	112	5	21	33	39	1.76
47483793--47484024	49	4.7	50	82	4	281	25	18	27	28	1.98
47483793--47484024	101	2.3	98	83	2	293	25	18	27	28	1.98
47487516--47487589	23	3.3	22	71	17	71	20	18	16	44	1.87
47487495--47487610	46	2.6	45	88	4	162	21	16	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47487523--47487610	45	1.9	46	95	2	160	22	18	17	42	1.89
47487532--47487610	23	3.5	22	72	16	72	22	17	17	41	1.90
47488877--47488950	24	3.1	24	88	0	112	32	31	12	24	1.92
47492567--47492630	29	2.2	29	94	0	110	25	34	21	18	1.96
47494273--47494414	50	2.8	49	89	2	212	26	23	21	28	1.99
47496437--47496531	29	3.3	28	76	4	91	28	27	22	22	1.99
47503086--47503118	14	2.4	14	95	5	59	24	15	18	42	1.88
47506875--47506934	25	2.3	25	85	5	75	16	23	11	48	1.79
47508602--47508653	4	13.5	4	80	8	54	28	1	0	69	0.99
47508602--47508654	27	2.0	27	85	7	72	30	1	0	67	1.01
47508614--47508664	16	3.3	15	79	20	52	31	3	0	64	1.11
47509347--47509567	12	18.5	12	65	19	72	25	4	9	60	1.48
47509382--47509467	24	3.7	24	76	13	83	25	5	6	61	1.44
47509519--47509592	36	2.1	36	85	10	98	29	4	5	60	1.37
47510199--47510344	37	4.0	37	93	1	242	24	21	16	36	1.94
47510308--47510576	46	5.6	46	85	10	340	28	22	14	34	1.93
47510351--47510570	52	4.3	52	86	8	308	27	22	14	35	1.93
47510308--47510576	98	2.7	98	92	0	439	28	22	14	34	1.93
47517367--47517427	32	1.9	31	86	3	86	44	11	13	31	1.79
47521460--47521582	61	2.0	61	98	0	237	25	21	7	46	1.77
47523605--47523696	43	2.1	43	80	7	98	25	22	21	30	1.99
47526040--47526268	48	4.8	48	71	8	180	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47531193--47531411	46	4.7	45	79	10	190	25	29	17	28	1.97
47533674--47533858	79	2.3	81	83	7	227	24	22	27	24	2.00
47533675--47533858	40	4.6	40	82	9	207	25	22	27	24	2.00
47533727--47533891	79	2.1	79	83	6	201	26	21	27	24	1.99
47543927--47543959	13	2.6	13	90	4	50	39	0	12	48	1.40
47547754--47547808	5	10.6	5	78	18	51	20	3	0	76	0.94
47549173--47549233	30	2.0	30	83	0	77	39	6	24	29	1.80
47549737--47549883	63	2.2	66	79	12	169	31	15	28	24	1.96
47557058--47557280	48	4.7	48	75	12	199	25	20	27	26	1.99
47563728--47563912	79	2.3	82	84	7	238	25	27	22	24	2.00
47563709--47563912	40	5.1	40	82	8	238	25	27	22	25	2.00
47571576--47571758	39	4.6	40	80	11	207	24	27	22	24	2.00
47571576--47571759	79	2.3	81	83	8	227	25	27	22	24	2.00
47580253--47580824	48	11.8	48	79	4	432	27	25	16	30	1.97
47580253--47580824	144	3.9	144	78	5	517	27	25	16	30	1.97
47580253--47580824	96	5.9	95	78	5	493	27	25	16	30	1.97
47585245--47585307	32	2.0	32	100	0	126	38	11	19	31	1.86
47587380--47587433	24	2.2	24	84	12	67	29	38	16	14	1.89
47590271--47590306	16	2.2	16	100	0	72	25	5	33	36	1.79
47593755--47593855	38	2.6	38	85	3	121	24	26	23	24	2.00
47593871--47594037	43	3.6	43	79	17	190	11	26	32	29	1.91
47593935--47593961	12	2.2	12	100	0	54	11	33	33	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47593892--47594002	55	2.0	55	98	0	213	9	27	33	28	1.89
47593896--47593986	27	3.3	27	65	24	73	8	27	32	30	1.87
47593956--47594050	43	2.2	43	90	0	145	12	23	34	29	1.92
47593872--47594073	98	2.1	98	83	3	255	14	23	31	30	1.95
47596435--47596496	32	1.9	32	90	6	99	32	12	12	41	1.81
47600645--47600696	24	2.5	20	76	17	52	55	1	1	40	1.22
47607281--47607366	31	2.8	31	87	1	129	26	26	16	30	1.97
47607676--47607723	11	4.6	11	80	12	57	33	18	12	35	1.89
47607760--47607807	25	1.9	25	91	0	78	29	14	22	33	1.94
47612788--47612913	47	2.7	47	82	7	141	21	20	25	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345