genome.fa.s6.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  128  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43468999--43469106	25	4.4	24	86	5	128	26	22	22	28	1.99
43476968--43477075	25	4.4	24	86	5	128	27	22	21	28	1.99
43476968--43477087	49	2.4	50	83	9	156	26	23	21	28	1.99
43477284--43477342	31	1.9	31	85	0	82	35	15	23	25	1.94
43481803--43481901	32	3.1	32	88	0	126	30	21	10	38	1.86
43481951--43482105	28	5.6	26	72	18	93	25	30	17	25	1.97
43481944--43482105	56	2.9	55	83	10	188	25	30	17	26	1.97
43484191--43484233	22	2.0	22	90	4	70	9	44	27	18	1.80
43490822--43490986	56	2.9	56	86	1	215	27	13	23	35	1.93
43492170--43492277	36	2.9	37	90	2	173	26	30	18	24	1.98
43492403--43492715	48	6.4	48	95	2	545	31	28	5	33	1.81
43492692--43492741	26	1.9	26	95	0	91	40	24	0	36	1.55
43492644--43492789	74	2.0	74	97	0	274	34	26	4	34	1.76
43492718--43493064	48	7.2	48	94	1	595	31	27	6	34	1.83
43492596--43492837	122	2.0	122	98	0	466	33	27	4	34	1.79
43492548--43492888	170	2.0	170	98	0	664	32	27	5	34	1.80
43496326--43496380	25	2.2	25	90	6	85	27	30	12	29	1.93
43496540--43496715	80	2.2	80	91	0	280	26	30	22	20	1.98
43496549--43496715	40	4.2	40	88	0	244	26	29	23	20	1.99
43500561--43500622	30	2.1	30	90	0	97	58	11	3	27	1.48
43505701--43506031	166	2.0	166	95	0	590	22	25	28	22	1.99
43511701--43511785	27	3.1	27	75	9	75	42	14	23	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43513571--43513595	12	2.1	12	100	0	50	60	0	32	8	1.26
43515831--43515927	21	4.6	21	71	0	59	44	19	20	15	1.87
43515836--43515927	42	2.2	42	86	0	121	45	18	20	15	1.85
43515860--43515962	42	2.5	42	85	3	127	42	15	23	18	1.88
43525694--43525754	30	2.1	29	96	3	113	24	16	22	36	1.94
43532982--43533042	30	2.1	29	93	3	104	26	16	21	36	1.94
43536468--43536509	19	2.2	19	86	4	57	2	45	0	52	1.13
43537829--43537965	60	2.3	60	82	6	152	29	19	24	25	1.98
43551645--43551681	16	2.3	16	86	13	58	40	0	0	59	0.97
43551705--43551748	22	2.0	22	86	0	61	47	0	0	52	1.00
43552950--43552977	3	9.3	3	100	0	56	67	0	0	32	0.91
43560122--43560358	41	5.8	41	94	4	374	27	19	23	29	1.98
43560122--43560358	81	2.9	82	91	5	374	27	19	23	29	1.98
43560122--43560355	122	1.9	122	90	5	375	27	19	23	29	1.98
43611615--43612204	47	12.6	47	95	1	1008	29	29	8	32	1.87
43615541--43615592	25	2.1	25	85	7	70	30	32	7	28	1.85
43615755--43616115	40	9.1	40	90	1	528	24	27	22	25	2.00
43618388--43618982	47	12.4	49	93	3	1004	30	28	7	33	1.85
43618388--43618982	143	4.1	142	94	3	1007	30	28	7	33	1.85
43622646--43622775	43	3.0	43	80	6	147	23	18	26	31	1.97
43626473--43626513	18	2.3	18	86	0	55	21	12	12	53	1.70
43642113--43642145	17	1.9	17	93	0	57	69	0	15	15	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43642122--43642164	14	3.2	13	81	18	52	72	0	11	16	1.13
43644478--43644593	43	2.7	43	78	2	126	27	15	26	30	1.96
43648550--43648604	2	27.5	2	88	0	83	52	0	45	1	1.11
43650489--43650529	21	2.0	21	100	0	82	19	17	14	48	1.81
43652244--43652297	27	2.0	27	92	0	90	51	9	9	29	1.65
43653994--43654018	12	2.1	12	100	0	50	52	40	0	8	1.31
43656315--43656467	51	3.0	51	84	2	220	29	26	18	25	1.98
43660428--43660462	18	1.9	18	88	0	52	74	8	0	17	1.06
43660852--43661010	7	21.1	7	69	17	72	65	0	2	31	1.11
43660840--43661009	24	6.7	26	69	24	82	64	1	2	31	1.13
43660853--43661010	29	5.2	30	70	19	98	65	0	2	31	1.11
43660839--43661002	41	4.0	41	75	13	119	64	1	2	31	1.14
43661022--43661090	16	4.4	16	76	7	61	65	0	2	31	1.08
43662565--43662776	69	3.1	69	90	0	316	28	27	13	30	1.94
43662700--43663088	84	4.7	84	87	1	532	27	27	12	32	1.93
43662818--43663026	39	5.1	39	68	20	131	25	25	15	33	1.95
43662700--43663088	165	2.3	167	87	1	575	27	27	12	32	1.93
43663076--43663181	55	1.9	55	88	0	158	25	28	13	33	1.93
43663131--43663214	44	1.9	44	90	0	132	26	26	15	32	1.96
43670285--43670325	14	2.9	14	89	7	57	2	36	4	56	1.34
43673882--43673971	43	2.1	43	82	8	105	52	11	3	33	1.53
43673971--43674005	18	1.9	18	88	0	52	74	8	0	17	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43674394--43674476	3	28.3	3	72	24	54	63	0	2	33	1.07
43674394--43674503	15	8.1	14	71	20	74	63	0	2	32	1.15
43674396--43674505	12	9.2	12	74	18	72	63	0	2	32	1.15
43674394--43674548	24	5.9	27	72	21	100	63	1	2	32	1.16
43674400--43674515	41	2.9	42	79	12	111	62	0	3	32	1.17
43674396--43674551	28	5.5	28	73	17	83	64	1	2	32	1.15
43674437--43674515	14	5.6	14	80	17	83	60	1	5	32	1.26
43674402--43674535	40	3.2	41	75	12	107	63	1	2	32	1.18
43674394--43674551	26	6.0	26	69	19	69	63	1	2	32	1.15
43674585--43674639	25	2.2	26	83	3	67	65	0	0	34	0.93
43676782--43676806	13	1.9	13	100	0	50	40	24	8	28	1.83
43678301--43678431	65	2.0	65	96	0	244	43	18	14	23	1.87
43678434--43678490	26	2.1	27	83	3	71	26	19	17	36	1.94
43685651--43685698	24	2.0	24	100	0	96	29	12	25	33	1.92
43687008--43687072	28	2.3	28	86	0	94	32	26	7	33	1.85
43687187--43687258	27	2.6	27	86	4	99	26	26	15	31	1.95
43688361--43688394	10	3.3	10	84	8	50	29	8	8	52	1.62
43693546--43693579	18	1.9	17	88	5	50	47	0	44	8	1.34
43694845--43694908	27	2.3	28	91	2	103	34	28	6	31	1.82
43695014--43695103	28	3.2	27	85	7	119	20	24	23	32	1.98
43695014--43695128	55	2.1	56	83	8	146	19	24	21	34	1.96
43698818--43698851	16	2.1	16	94	0	59	35	20	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43702820--43702892	34	2.1	34	82	2	83	36	8	13	41	1.75
43708637--43708684	24	2.0	24	87	0	69	22	20	16	39	1.92
43708637--43708722	23	3.7	23	80	10	79	25	17	17	39	1.91
43720863--43721205	40	8.6	40	90	2	476	24	20	27	26	1.99
43728480--43728729	40	6.2	40	90	2	360	25	20	27	26	1.99
43728640--43728823	94	1.9	96	81	6	223	25	19	28	26	1.99
43736047--43736178	47	2.8	47	83	5	158	31	28	16	23	1.96
43736050--43736178	48	2.7	47	83	3	152	31	28	16	24	1.96
43739803--43739840	19	2.0	19	100	0	76	52	10	10	26	1.68
43743625--43743737	6	18.3	6	71	18	81	46	14	20	18	1.83
43743646--43743737	25	3.7	25	92	0	157	45	14	21	18	1.84
43743855--43743962	27	4.0	26	82	5	117	36	20	23	20	1.95
43744121--43744184	22	2.9	22	77	9	67	31	23	23	21	1.99
43744575--43744708	27	5.0	27	81	0	160	26	20	17	35	1.95
43744575--43744708	54	2.5	54	88	0	196	26	20	17	35	1.95
43744692--43744791	27	3.7	27	73	7	78	30	9	24	37	1.86
43744740--43744943	81	2.5	81	84	1	248	30	9	21	37	1.86
43744729--43744952	27	8.3	27	86	2	218	29	8	22	39	1.84
43744800--43744968	81	2.1	81	87	1	241	31	8	21	39	1.83
43746914--43747026	6	18.3	6	72	18	81	46	15	19	18	1.83
43746935--43747026	25	3.7	25	89	0	148	45	15	20	18	1.85
43747144--43747251	27	4.0	26	79	5	108	37	20	22	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43747410--43747474	22	3.0	22	80	8	78	30	21	26	21	1.98
43747866--43748003	27	5.1	27	84	0	188	25	22	18	33	1.97
43748041--43748301	81	3.2	80	83	4	317	30	8	19	40	1.82
43748042--43748301	27	9.6	27	84	0	286	30	8	19	41	1.82
43754965--43755006	16	2.7	15	79	20	50	47	2	0	50	1.14
43755187--43755220	17	1.9	18	88	5	52	50	5	5	38	1.51
43758696--43758743	18	2.4	19	80	16	53	50	4	2	43	1.33
43763184--43763799	27	22.9	27	79	5	534	39	19	9	31	1.84
43763185--43763799	81	7.6	81	79	8	637	39	19	9	31	1.83
43764193--43764234	22	1.9	22	90	0	66	23	23	19	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345