Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  314  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106062244--106062276
14
2.4
14
100
0
66
15
18
0
66
1.25
106068482--106068570
44
2.0
45
95
2
162
30
16
6
46
1.73
106070495--106070527
17
2.1
17
88
11
52
18
6
30
45
1.73
106071070--106071101
16
2.0
16
93
0
55
28
12
15
43
1.83
106072334--106072418
16
5.3
16
71
10
75
44
2
0
52
1.13
106072339--106072438
12
9.1
12
74
21
87
47
2
0
51
1.12
106072334--106072427
32
2.9
32
98
0
179
45
2
0
52
1.12
106072334--106072489
64
2.6
60
81
14
155
45
2
1
50
1.23
106073434--106073483
21
2.5
21
83
6
68
30
16
20
34
1.94
106076966--106077142
40
4.4
40
81
4
216
23
22
27
26
1.99
106084435--106084463
13
2.1
14
93
6
51
58
0
6
34
1.25
106085450--106085474
13
1.9
13
100
0
50
32
16
12
40
1.84
106086482--106086526
17
2.7
16
86
13
56
20
2
0
77
0.87
106086476--106086536
22
2.6
22
87
7
77
22
3
0
73
0.97
106086554--106086611
20
2.9
21
82
12
68
37
0
3
58
1.15
106086554--106086611
21
2.9
20
85
10
66
37
0
3
58
1.15
106086577--106086625
23
2.3
20
83
13
62
48
0
0
51
1.00
106086577--106086624
21
2.2
20
80
20
53
50
0
0
50
1.00
106086724--106086763
15
2.8
15
85
7
57
55
0
7
37
1.29
106086775--106086832
20
2.5
24
81
18
79
53
3
0
43
1.17
106086922--106086960
10
4.1
9
90
3
51
82
0
12
5
0.83
106087544--106087594
3
17.3
3
85
4
50
1
41
0
56
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106090881--106090910
12
2.5
12
94
0
51
50
0
3
46
1.18
106092297--106092460
42
3.7
42
86
8
204
28
27
14
29
1.95
106092367--106092550
49
3.8
49
83
9
193
30
26
13
29
1.94
106092341--106092550
47
4.6
47
80
10
186
30
26
14
29
1.95
106092579--106092727
31
4.8
31
90
3
228
26
27
19
26
1.99
106092703--106092830
50
2.5
51
86
3
179
25
23
17
33
1.96
106095322--106095388
32
2.1
32
100
0
134
28
0
17
53
1.44
106096812--106096971
3
52.7
3
78
8
130
62
0
6
31
1.20
106096818--106096920
13
7.7
14
76
14
78
66
0
4
29
1.13
106096834--106096923
26
3.5
26
72
18
89
66
0
4
28
1.11
106096818--106096929
32
3.6
31
75
19
119
65
0
5
29
1.15
106096805--106096957
32
5.0
29
73
18
114
64
0
7
28
1.20
106097170--106097216
21
2.2
21
100
0
94
55
0
17
27
1.42
106097666--106097700
14
2.6
13
86
8
52
88
0
5
5
0.63
106098402--106098760
44
7.8
44
67
16
192
26
23
20
28
1.99
106098401--106098885
136
3.5
136
86
5
684
26
24
20
29
1.99
106100776--106100951
46
3.8
46
77
10
187
21
21
28
29
1.98
106100773--106100944
93
1.8
93
91
0
281
21
21
28
28
1.99
106102494--106102526
6
5.8
6
89
10
52
0
12
0
87
0.53
106102494--106102525
17
1.9
17
93
6
57
0
12
0
87
0.54
106105328--106105370
20
2.2
19
83
4
50
44
9
20
25
1.81
106107538--106107593
29
1.9
29
96
0
103
32
10
10
46
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106107988--106108176
3
63.7
3
73
10
131
62
0
6
30
1.24
106107988--106108134
42
3.5
42
85
5
201
63
0
8
28
1.23
106108830--106108863
13
2.6
13
90
9
52
85
0
8
5
0.75
106109169--106109208
20
2.0
20
95
0
71
20
22
50
7
1.73
106109629--106109760
42
3.1
42
83
0
147
15
21
18
44
1.86
106109686--106109755
21
3.3
20
75
9
68
14
21
20
44
1.86
106113811--106113866
23
2.3
22
82
14
58
58
0
3
37
1.15
106118203--106118248
19
2.4
20
82
7
60
41
2
0
56
1.11
106118664--106118716
28
2.0
27
85
10
74
39
7
3
49
1.49
106126135--106126174
20
2.0
20
85
0
53
40
2
15
42
1.60
106128388--106128420
4
8.2
4
100
0
66
75
0
24
0
0.80
106130615--106130693
36
2.2
36
82
4
90
55
8
16
18
1.66
106133598--106133747
9
16.6
9
67
19
89
29
4
1
65
1.19
106133595--106133670
20
3.9
20
78
13
86
23
2
2
71
1.12
106133590--106133670
29
2.8
29
78
1
90
24
2
2
70
1.12
106143605--106143717
36
3.0
36
79
7
93
64
2
1
30
1.17
106143656--106143717
17
3.5
17
72
8
61
62
4
1
30
1.25
106143645--106143735
19
4.8
19
72
8
69
62
5
2
29
1.29
106143942--106144034
30
3.1
30
74
18
104
34
6
0
59
1.23
106143950--106144044
30
3.2
29
73
14
86
31
7
1
60
1.31
106148110--106148166
26
2.2
26
96
0
105
42
21
1
35
1.63
106150409--106150440
15
2.1
15
100
0
64
31
0
31
37
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106154084--106154125
16
2.5
17
80
7
50
78
7
4
9
1.08
106155331--106155362
17
2.0
17
88
11
50
34
0
0
65
0.93
106159136--106159201
31
2.2
31
88
2
98
37
10
4
46
1.59
106165234--106165309
37
2.1
37
100
0
152
39
10
13
36
1.79
106169250--106169347
27
3.5
28
90
2
135
26
13
28
31
1.94
106169278--106169360
27
3.0
27
87
5
96
30
12
25
32
1.92
106169250--106169361
28
4.0
27
83
6
98
28
12
25
33
1.92
106177343--106177440
27
3.5
28
90
2
135
26
13
28
31
1.94
106177371--106177453
27
3.0
27
87
5
96
30
12
25
32
1.92
106177343--106177454
28
4.0
27
83
6
98
28
12
25
33
1.92
106185112--106185167
26
2.2
26
96
0
103
37
26
5
30
1.79
106189198--106189262
21
3.2
21
74
12
82
12
26
21
40
1.88
106189180--106189280
39
2.6
39
93
0
166
13
25
22
37
1.92
106189949--106189996
25
1.9
25
83
8
62
68
4
2
25
1.18
106200947--106200973
13
2.1
13
100
0
54
29
7
7
55
1.55
106201179--106201210
12
2.6
12
95
5
55
68
6
0
25
1.12
106204263--106204406
38
3.8
38
81
0
108
38
27
18
15
1.91
106210746--106210788
23
1.9
23
85
4
61
39
6
13
39
1.72
106211510--106211580
29
2.3
31
83
11
85
29
14
19
36
1.91
106218245--106218327
18
4.8
18
69
21
70
44
2
3
49
1.32
106220158--106220210
3
17.7
3
100
0
106
67
0
0
32
0.91
106228684--106228826
77
1.9
74
81
9
173
30
15
27
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106231447--106231485
5
7.6
5
88
5
60
82
0
2
15
0.79
106231445--106231485
16
2.7
15
88
7
64
82
0
2
14
0.76
106237462--106237503
14
2.9
14
89
3
57
76
9
9
4
1.15
106239142--106239201
28
2.2
28
82
14
72
35
0
1
63
1.05
106239689--106239796
33
3.4
32
67
17
82
37
0
11
51
1.37
106239667--106239797
61
2.1
62
88
2
192
34
0
9
55
1.33
106240597--106241066
213
2.2
209
91
1
760
39
10
6
42
1.66
106243321--106243397
33
2.3
33
86
0
109
11
49
15
23
1.77
106258048--106258168
11
10.9
11
69
19
65
25
3
5
65
1.31
106261565--106261669
25
4.2
25
82
4
140
37
14
17
31
1.89
106263603--106263656
24
2.2
24
84
12
67
29
37
16
16
1.91
106270524--106270567
19
2.2
19
88
8
61
59
11
2
27
1.44
106273553--106273604
24
2.2
24
93
6
90
51
21
3
23
1.63
106280614--106280643
15
1.9
16
93
6
53
66
3
0
30
1.07
106288505--106288591
30
2.9
30
77
1
95
33
19
13
33
1.91
106295803--106295850
17
2.8
17
84
9
62
52
4
16
27
1.62
106295914--106296121
54
3.9
53
80
7
226
33
15
25
25
1.95
106295932--106296121
53
3.6
51
79
5
182
33
15
25
25
1.95
106296938--106296995
20
2.9
20
92
0
98
12
32
34
20
1.90
106297477--106297513
13
2.8
13
91
4
56
51
21
0
27
1.48
106298941--106298982
21
2.0
21
90
0
66
16
9
0
73
1.08
106302492--106302539
5
9.2
5
84
15
62
77
0
4
18
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106302492--106302539
21
2.3
20
86
13
62
77
0
4
18
0.93
106302975--106303026
18
2.9
18
88
0
77
36
11
11
40
1.78
106303443--106303699
72
3.6
72
84
4
331
26
6
14
52
1.65
106307235--106307500
18
14.8
18
81
3
250
3
15
28
52
1.59
106307235--106307494
36
7.2
36
84
1
288
3
15
28
52
1.58
106307235--106307506
54
5.0
54
86
1
303
3
16
28
51
1.61
106311937--106311976
18
2.2
18
86
8
55
35
0
5
60
1.19
106312116--106312161
23
2.0
23
87
4
67
43
4
8
43
1.55
106312644--106312670
5
5.4
5
100
0
54
81
0
0
18
0.69
106319665--106319694
6
5.0
6
100
0
60
66
0
0
33
0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345