genome.fa.s6.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  166  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56866120--56866196	29	2.7	29	91	0	118	33	23	23	19	1.97
56873242--56873356	29	4.0	29	85	8	139	28	28	13	28	1.95
56876294--56876349	23	2.4	23	100	0	112	37	16	21	25	1.93
56879126--56879287	43	3.8	43	80	2	173	35	24	13	26	1.92
56879684--56879714	9	3.4	9	95	0	53	64	19	0	16	1.29
56881581--56881635	14	3.9	14	87	0	74	36	10	20	32	1.87
56882102--56882153	15	3.2	15	73	19	50	44	0	1	53	1.11
56882217--56882282	32	2.0	35	85	8	93	56	0	0	43	0.99
56882435--56882503	34	2.0	34	100	0	138	43	2	8	44	1.50
56883301--56883328	14	2.0	14	100	0	56	28	50	0	21	1.49
56894623--56894733	29	3.9	29	87	1	152	27	33	13	26	1.93
56894638--56894756	29	4.1	28	86	3	103	28	31	12	26	1.93
56900456--56900627	93	1.8	93	94	0	308	27	29	22	20	1.98
56900449--56900624	46	3.8	46	78	12	207	28	29	21	20	1.98
56902337--56902406	6	11.8	6	84	6	81	15	1	1	81	0.84
56902337--56902405	33	2.1	33	83	2	84	14	1	1	82	0.81
56902352--56902417	12	5.6	12	78	7	55	18	1	0	80	0.79
56902363--56902421	26	2.3	27	82	8	77	20	1	0	77	0.85
56911047--56911168	41	3.0	41	78	5	131	36	15	27	21	1.93
56924597--56924902	40	7.7	40	84	4	359	25	20	27	26	1.99
56924596--56924902	80	3.8	80	89	0	454	25	20	27	26	1.99
56924597--56924902	120	2.6	120	85	4	404	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56935521--56935719	103	1.9	102	83	4	256	36	11	17	35	1.85
56936863--56936955	39	2.4	39	88	1	132	35	21	22	20	1.96
56937363--56937411	15	3.4	14	83	10	55	20	0	36	42	1.52
56937363--56937469	14	7.4	14	71	15	67	20	2	40	36	1.67
56937614--56937708	7	13.4	7	68	10	50	25	1	25	48	1.58
56937614--56937658	14	3.2	14	87	0	63	22	0	28	48	1.50
56937703--56937735	14	2.3	15	89	5	50	15	3	45	36	1.61
56937939--56937980	8	5.5	8	83	8	52	42	9	4	42	1.58
56937939--56937980	15	2.7	15	92	3	66	42	9	4	42	1.58
56938403--56938526	27	4.8	27	92	3	141	12	41	22	23	1.88
56942774--56943689	47	19.2	47	88	5	1200	33	9	28	28	1.88
56942770--56943634	194	4.5	195	90	5	1372	33	8	27	29	1.87
56942770--56943638	192	4.5	192	90	4	1357	33	8	28	29	1.87
56943806--56943883	36	2.1	37	88	2	113	24	19	30	25	1.98
56945718--56945805	43	2.2	39	86	13	119	23	12	34	29	1.92
56945768--56945832	25	2.4	28	82	15	100	24	13	32	29	1.94
56945780--56945830	25	2.0	25	100	0	102	23	15	31	29	1.95
56945741--56945873	68	2.0	68	100	0	266	23	13	34	28	1.93
56945863--56945936	29	2.6	29	89	4	105	25	16	32	25	1.96
56946329--56946558	40	5.9	40	86	5	294	23	22	28	25	1.99
56946329--56946558	119	2.0	114	83	4	289	23	22	28	25	1.99
56946250--56946558	79	4.0	80	80	7	278	23	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56948162--56948503	144	2.4	143	87	4	469	33	9	29	28	1.88
56948162--56948452	95	3.1	96	91	3	475	32	8	28	29	1.86
56948162--56948503	47	7.2	47	87	5	465	33	9	29	28	1.88
56948162--56948503	95	3.6	95	88	4	469	33	9	29	28	1.88
56948620--56948698	37	2.1	37	90	0	122	24	18	31	25	1.98
56950553--56950671	43	2.7	42	81	18	145	22	13	36	27	1.92
56950660--56950733	29	2.6	29	89	4	105	25	16	32	25	1.96
56951093--56951265	38	4.6	36	88	10	108	25	20	28	26	1.99
56951110--56951341	40	5.9	40	87	4	296	24	22	28	25	2.00
56951110--56951341	78	3.0	77	85	5	281	24	22	28	25	2.00
56954521--56955211	47	14.4	47	91	3	977	32	9	29	29	1.88
56955330--56955408	37	2.1	37	88	0	113	25	18	30	25	1.98
56957160--56957190	15	2.0	16	93	6	55	51	3	6	38	1.44
56957960--56958000	19	2.2	19	100	0	82	36	9	9	43	1.71
56958186--56958292	43	2.5	43	85	0	169	23	15	31	28	1.96
56958289--56958600	94	3.3	94	96	0	570	30	11	18	39	1.86
56966157--56966530	94	4.0	94	97	0	689	30	10	19	40	1.85
56966486--56966596	24	4.6	24	71	14	77	25	13	28	32	1.94
56966560--56966622	24	2.6	25	87	5	85	22	15	28	33	1.95
56973222--56973270	22	2.2	23	92	3	82	46	30	4	18	1.67
56975481--56975615	42	3.1	42	74	12	121	27	25	19	28	1.99
56975568--56975703	48	2.8	48	86	0	182	29	22	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56981961--56982002	21	2.0	21	100	0	84	38	23	14	23	1.92
56982210--56982426	48	4.7	48	74	12	170	27	25	17	28	1.98
56985455--56985491	15	2.4	16	86	8	51	48	18	0	32	1.49
56985672--56985740	23	2.9	24	80	6	86	33	17	24	24	1.96
56988540--56989439	300	3.0	296	89	3	1353	35	16	6	40	1.75
56995150--56995311	40	4.1	40	86	4	213	25	22	26	25	2.00
56995155--56995326	79	2.2	79	82	6	188	27	22	25	25	2.00
57003007--57003252	40	6.2	40	90	4	376	24	22	27	25	2.00
57003007--57003252	79	3.1	80	91	4	385	24	22	27	25	2.00
57010107--57010208	27	3.8	27	84	5	118	37	18	23	20	1.94
57021502--57021682	80	2.3	80	83	9	219	27	27	20	23	1.99
57021499--57021682	40	4.6	40	81	7	196	28	27	20	23	1.99
57029286--57029432	40	3.7	40	83	5	120	25	27	21	25	2.00
57029332--57029512	80	2.3	80	83	9	219	27	27	20	23	1.99
57029329--57029512	40	4.6	40	81	7	196	28	27	20	23	1.99
57036383--57036560	27	6.6	27	82	3	187	29	27	15	27	1.96
57036404--57036559	82	1.9	81	85	3	215	28	27	16	27	1.97
57044463--57044640	27	6.6	27	81	3	169	29	26	15	28	1.96
57044484--57044639	82	1.9	81	84	3	206	28	26	16	28	1.97
57047017--57047124	53	2.0	54	94	1	191	36	12	24	27	1.91
57048464--57048694	115	2.0	115	97	1	437	32	11	22	33	1.89
57054969--57055192	104	2.2	104	93	1	378	31	31	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57055521--57055584	30	2.2	29	81	10	76	29	28	6	35	1.82
57055528--57055584	30	1.9	30	85	3	80	29	24	7	38	1.82
57058336--57058507	93	1.8	93	95	2	310	28	29	20	20	1.98
57058329--57058504	46	3.8	46	79	14	209	29	29	20	20	1.98
57061162--57061262	24	4.2	24	94	0	157	32	1	40	24	1.67
57062615--57062726	27	4.2	26	83	7	134	16	23	23	37	1.93
57062615--57062726	54	2.1	54	91	3	181	16	23	23	37	1.93
57069753--57069855	42	2.4	43	77	7	104	28	23	18	30	1.98
57079240--57079292	26	2.1	25	85	3	70	33	9	15	41	1.79
57080066--57080114	11	4.5	11	72	23	50	42	16	24	16	1.87
57080073--57080112	20	1.9	20	85	10	53	37	17	25	20	1.94
57080845--57080873	10	2.9	10	100	0	58	72	6	0	20	1.07
57084003--57084055	26	2.1	25	86	10	72	33	9	13	43	1.76
57084783--57084822	20	1.9	20	85	10	53	37	15	25	22	1.93
57085850--57085874	6	4.2	6	100	0	50	36	16	16	32	1.90
57086054--57086087	14	2.4	14	85	0	50	26	0	8	64	1.22
57089067--57089112	20	2.3	20	96	0	83	28	28	13	30	1.94
57100289--57100349	32	1.9	32	100	0	122	44	13	14	27	1.83
57111376--57111436	25	2.4	26	73	15	65	27	8	6	57	1.53
57111567--57111610	13	3.3	13	84	12	54	65	0	0	34	0.93
57111601--57111626	7	3.7	7	100	0	52	88	0	0	11	0.52
57114522--57114577	21	2.7	21	94	0	94	23	30	32	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57116636--57116683	19	2.6	19	90	6	73	29	14	6	50	1.67
57121981--57122027	22	2.1	22	100	0	94	27	4	23	44	1.72
57131302--57131370	34	2.0	34	100	0	138	42	17	8	31	1.80
57131841--57131871	16	2.0	15	93	6	53	32	19	0	48	1.49
57132070--57132309	50	4.8	50	81	2	248	30	27	17	23	1.97
57136808--57136934	47	2.7	48	85	6	172	22	25	18	33	1.97
57136903--57137073	46	3.7	47	77	10	147	21	28	20	29	1.98
57139614--57139639	13	2.0	13	100	0	52	23	0	38	38	1.55
57140395--57140726	165	2.0	166	96	0	612	26	17	18	36	1.94
57141373--57141446	27	2.7	27	81	6	96	37	14	22	24	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345