genome.fa.s6.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  219  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74242879--74242985	28	3.8	28	87	0	133	28	24	12	34	1.91
74242879--74242985	56	1.9	56	86	0	151	28	24	12	34	1.91
74245078--74245143	25	2.6	25	100	0	132	34	27	15	22	1.94
74247507--74247625	46	2.5	46	85	5	141	26	19	30	24	1.98
74247546--74247674	46	2.9	43	80	9	123	24	20	29	25	1.99
74262146--74262419	46	5.8	46	73	11	182	23	29	19	27	1.98
74267403--74267503	28	3.6	28	90	0	148	27	33	13	24	1.94
74271017--74271096	27	3.0	27	87	5	108	33	22	25	18	1.97
74271228--74271301	26	2.8	26	81	4	76	29	10	24	35	1.89
74276028--74276122	46	2.1	46	88	4	138	44	17	11	26	1.83
74277082--74277140	29	2.0	30	93	3	102	30	8	22	38	1.83
74279764--74279789	8	3.2	8	100	0	52	34	0	0	65	0.93
74286111--74286238	46	2.8	46	80	9	145	31	27	18	22	1.97
74286114--74286257	46	3.1	45	71	18	118	30	27	18	22	1.98
74297595--74297691	42	2.3	42	87	7	135	31	24	12	30	1.92
74298497--74298521	12	2.1	12	100	0	50	16	8	16	60	1.58
74305365--74305508	42	3.4	42	81	3	155	27	23	15	33	1.95
74319947--74320204	48	5.4	49	70	10	158	28	20	27	24	1.99
74321732--74321810	37	2.1	37	88	0	113	26	31	17	24	1.97
74321929--74322293	47	7.8	47	92	0	586	29	30	8	31	1.87
74322145--74322220	22	3.3	22	64	10	62	28	30	11	28	1.92
74325190--74325571	40	9.6	40	84	5	366	25	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74327425--74327503	37	2.1	37	90	0	122	25	31	18	24	1.98
74327622--74327844	47	4.7	47	91	1	331	27	30	8	32	1.88
74332219--74332290	21	3.2	21	64	21	56	25	23	11	40	1.87
74332033--74332289	138	1.9	138	87	1	381	21	23	13	42	1.88
74332033--74332291	46	5.6	46	90	0	340	21	23	13	42	1.88
74335183--74335223	12	3.4	12	89	0	64	4	21	0	73	1.02
74338038--74338145	22	4.6	23	80	6	103	42	18	19	19	1.89
74338087--74338166	25	3.2	25	87	0	88	40	16	21	22	1.91
74341167--74341197	15	2.1	15	100	0	62	48	6	32	12	1.67
74341396--74341487	41	2.2	42	84	5	116	27	15	27	30	1.96
74346132--74346259	39	3.3	39	88	0	184	32	20	25	21	1.97
74346131--74346285	78	2.0	76	81	5	177	31	21	25	21	1.98
74354382--74354415	7	4.9	7	89	10	52	0	17	0	82	0.67
74354377--74354415	13	2.7	15	80	19	55	0	20	0	79	0.73
74355255--74355306	20	2.7	19	80	13	54	46	1	1	50	1.23
74357032--74357074	21	2.0	21	90	0	68	53	9	16	20	1.70
74358696--74358791	46	2.1	46	100	0	192	47	11	4	36	1.59
74362984--74363034	25	2.1	24	82	10	59	56	1	5	35	1.35
74363467--74363496	12	2.4	12	94	5	51	90	0	10	0	0.47
74363467--74363496	14	2.1	14	93	0	51	90	0	10	0	0.47
74364967--74365160	46	4.2	46	80	6	223	24	24	15	35	1.95
74371714--74371770	27	2.2	26	83	3	69	56	3	7	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74371788--74371838	25	2.1	24	82	10	59	56	1	5	35	1.35
74373172--74373216	23	1.9	24	86	4	65	48	0	0	51	1.00
74374774--74374800	5	5.4	5	100	0	54	18	0	0	81	0.69
74377511--74377551	19	2.2	19	83	12	50	51	12	0	36	1.40
74381050--74381097	19	2.8	17	81	12	55	29	4	0	66	1.10
74381050--74381098	17	2.7	18	87	6	64	28	4	0	67	1.09
74389241--74389341	30	3.4	30	86	2	123	41	34	9	13	1.78
74392977--74393151	27	6.4	27	81	10	196	30	28	16	25	1.96
74399818--74400024	27	7.6	27	82	7	238	26	15	27	30	1.96
74399818--74399998	84	2.2	81	84	7	231	27	16	27	29	1.96
74399819--74400024	111	1.9	110	87	3	306	26	15	27	30	1.96
74404083--74404115	7	4.9	7	85	7	50	15	0	0	84	0.61
74408361--74408390	16	1.9	15	93	6	51	33	23	0	43	1.54
74408600--74408883	50	5.6	50	78	6	279	31	25	16	26	1.96
74408651--74408832	101	1.8	101	87	0	274	29	24	18	28	1.98
74412070--74412144	39	1.9	39	81	5	89	34	13	16	36	1.87
74412132--74413120	39	24.6	39	74	7	670	32	14	23	30	1.94
74412639--74412743	54	1.9	54	86	3	149	32	16	22	28	1.96
74412443--74412951	132	4.0	129	76	12	446	31	14	23	30	1.94
74412549--74412781	93	2.5	93	97	0	439	32	15	23	29	1.95
74415975--74416014	20	2.0	20	85	5	53	5	20	17	57	1.58
74415982--74416019	20	2.0	20	85	10	53	2	18	18	60	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74418288--74418463	46	3.8	46	79	12	207	20	21	29	28	1.98
74418285--74418456	93	1.8	93	94	0	308	20	22	29	27	1.98
74422120--74422213	49	1.9	49	97	0	179	42	15	14	26	1.86
74425193--74425397	101	2.0	101	99	0	401	36	15	12	35	1.86
74425948--74425979	16	2.0	16	93	0	55	34	18	0	46	1.49
74426179--74426470	50	5.8	50	80	2	318	31	25	17	25	1.97
74426182--74426475	101	2.9	100	80	5	353	32	25	17	24	1.97
74426819--74426864	19	2.3	20	82	14	60	47	15	0	36	1.45
74428310--74428341	16	2.0	16	93	0	55	34	18	0	46	1.49
74428595--74428884	101	2.9	101	87	0	391	31	23	18	26	1.98
74428543--74428885	50	6.8	50	77	6	280	30	24	17	27	1.97
74428747--74428830	26	3.3	26	64	21	68	30	22	19	27	1.98
74428542--74428875	151	2.2	151	80	3	359	30	23	17	27	1.97
74429233--74429279	19	2.3	20	82	10	60	48	14	0	36	1.44
74429500--74429558	30	2.0	30	82	0	73	27	27	6	38	1.81
74450182--74450207	3	8.7	3	100	0	52	0	34	0	65	0.93
74453722--74453845	45	2.7	44	83	13	137	26	18	29	25	1.98
74459550--74459721	46	3.7	46	77	14	201	30	26	20	23	1.98
74459554--74459725	93	1.8	93	92	2	292	29	26	20	23	1.99
74460143--74460202	30	2.0	30	83	0	75	31	25	6	36	1.82
74464732--74464765	17	2.0	17	88	0	50	26	0	14	58	1.36
74476567--74476621	27	2.0	27	100	0	110	29	3	29	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74477481--74477635	42	3.7	42	83	8	181	29	17	27	26	1.98
74495880--74496102	40	5.7	40	83	6	240	25	27	21	25	1.99
74495880--74496102	79	2.8	77	81	8	243	25	27	21	25	1.99
74496034--74496111	40	1.9	41	82	10	97	26	28	20	24	1.99
74498945--74499077	48	2.8	47	80	5	142	21	28	21	28	1.99
74502165--74502290	37	3.2	39	78	12	125	28	27	19	24	1.98
74503567--74503591	12	2.1	12	100	0	50	24	36	8	32	1.84
74512111--74512147	18	2.1	18	90	10	58	0	21	0	78	0.75
74512111--74512140	15	1.9	16	93	6	53	0	20	0	80	0.72
74514886--74515002	41	3.0	39	81	10	141	24	20	26	28	1.99
74517076--74517153	36	2.1	37	88	2	113	25	32	17	24	1.97
74517271--74517634	47	7.8	47	96	0	649	29	30	8	31	1.86
74520520--74520817	39	7.6	40	85	4	331	25	28	21	24	1.99
74520520--74520896	79	4.8	78	83	5	354	25	28	21	24	1.99
74520553--74520896	39	8.7	40	85	6	221	25	27	21	25	1.99
74522747--74522825	37	2.1	37	90	0	122	25	31	18	24	1.98
74522944--74523445	47	10.7	47	93	1	814	28	30	8	32	1.88
74523251--74523326	22	3.3	22	64	10	62	28	30	11	28	1.92
74523009--74523493	232	2.1	230	87	6	682	30	28	8	32	1.87
74531713--74531856	59	2.4	60	80	10	161	27	25	19	27	1.99
74531849--74531893	20	2.3	19	85	11	56	24	28	20	26	1.99
74531861--74531904	19	2.2	20	84	4	54	34	25	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74542373--74542420	15	3.1	15	77	19	53	33	20	0	45	1.52
74542723--74542793	25	2.9	25	82	2	90	32	22	28	16	1.96
74542870--74542929	26	2.3	25	80	8	66	45	21	20	13	1.85
74543902--74543958	25	2.3	25	81	0	78	35	17	5	42	1.72
74547074--74547697	47	13.3	47	90	0	996	28	29	8	33	1.87
74547074--74547697	94	6.6	94	96	0	1104	28	29	8	33	1.87
74549687--74549891	27	7.6	27	84	5	243	25	15	28	30	1.96
74549688--74549891	109	1.9	108	87	3	302	25	15	28	30	1.96
74559519--74559722	40	5.1	40	90	3	288	26	28	22	22	1.99
74576095--74576201	29	3.7	29	77	6	119	26	14	32	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345