genome.fa.s6.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  159  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54139500--54139758	95	2.8	94	81	6	278	24	22	24	28	2.00
54139581--54139757	48	3.7	48	88	1	257	25	22	23	28	1.99
54141307--54141336	14	2.1	14	100	0	60	20	6	26	46	1.75
54143166--54143228	24	2.6	24	87	5	83	20	15	30	33	1.94
54145387--54145448	26	2.3	26	78	8	72	32	12	19	35	1.90
54145349--54145456	26	4.1	26	66	22	64	33	17	18	30	1.94
54145359--54145506	27	5.6	27	73	7	79	32	15	17	34	1.91
54145387--54145597	27	7.9	27	74	5	151	26	16	19	37	1.93
54146856--54146944	44	2.0	44	100	0	178	34	26	11	26	1.90
54151297--54151337	13	3.0	14	75	17	50	70	0	7	21	1.11
54152589--54152633	21	2.2	20	88	7	65	20	35	24	20	1.96
54157321--54157594	43	6.5	42	77	7	250	31	24	14	29	1.95
54157313--54157587	128	2.1	128	82	2	329	30	24	14	29	1.95
54157384--54157595	85	2.5	85	90	0	325	31	24	15	28	1.95
54159736--54159768	16	2.0	17	88	5	50	27	27	3	42	1.70
54163892--54163938	23	2.0	23	100	0	94	40	25	8	25	1.84
54163938--54164297	43	8.4	43	86	2	467	31	24	15	28	1.96
54163938--54164297	85	4.2	84	86	3	449	31	24	15	28	1.96
54166198--54166349	40	3.8	40	88	3	200	21	24	29	25	1.99
54173541--54173929	47	8.1	47	86	5	535	30	12	30	26	1.93
54173709--54173784	24	3.2	24	62	23	61	28	13	32	25	1.93
54173541--54173929	100	4.0	98	91	3	596	30	12	30	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54174137--54174356	37	5.9	37	95	0	377	23	18	30	26	1.98
54178403--54178618	79	2.7	80	84	6	255	24	22	27	25	2.00
54178403--54178618	40	5.5	40	84	7	248	24	22	27	25	2.00
54182672--54182826	39	4.0	39	91	3	258	21	24	29	23	1.99
54188431--54188581	38	4.0	38	92	1	250	21	23	29	24	1.99
54193291--54193462	93	1.8	93	95	2	310	28	29	20	20	1.98
54193284--54193459	46	3.8	46	79	14	209	29	29	20	20	1.98
54207888--54207930	18	2.4	18	84	0	59	48	9	20	20	1.77
54208541--54208565	7	3.6	7	100	0	50	60	12	0	28	1.32
54210326--54210533	46	4.5	45	74	10	136	27	25	19	27	1.99
54210463--54210632	46	3.7	44	72	17	132	25	28	17	28	1.98
54210552--54210657	46	2.3	47	82	9	119	29	31	15	24	1.95
54218010--54218371	47	7.7	46	75	9	247	24	29	19	27	1.98
54218007--54218371	137	2.6	141	78	9	381	24	29	18	27	1.98
54220176--54220257	25	3.1	25	74	13	76	62	3	3	30	1.30
54220176--54220289	55	2.1	55	88	1	167	61	3	3	31	1.30
54220477--54220523	21	2.2	22	77	11	53	36	2	19	42	1.63
54221218--54221257	18	2.2	18	86	8	55	32	0	0	67	0.91
54225196--54225252	30	1.9	30	88	0	87	21	36	0	42	1.53
54228179--54228222	23	1.9	23	100	0	88	40	9	0	50	1.34
54228603--54228642	19	2.1	19	85	0	53	22	32	5	40	1.76
54231400--54231516	62	1.9	59	86	5	162	50	3	4	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54231502--54231560	20	3.0	19	80	11	66	55	0	5	38	1.22
54242424--54242462	20	2.1	19	85	9	53	2	25	17	53	1.56
54242832--54242963	47	2.8	48	85	1	176	34	29	15	21	1.94
54257378--54257431	26	2.3	22	81	18	56	46	18	1	33	1.60
54264089--54264163	25	3.0	25	78	7	82	60	0	0	40	0.97
54264089--54264163	12	6.1	12	78	4	78	60	0	0	40	0.97
54264089--54264163	37	2.0	37	94	0	132	60	0	0	40	0.97
54267559--54267617	20	3.0	20	92	0	100	37	10	20	32	1.86
54267668--54267861	24	8.1	24	93	0	327	28	21	21	27	1.99
54275724--54275782	20	3.0	20	92	0	100	37	10	20	32	1.86
54275833--54276002	24	7.1	24	89	0	261	29	21	21	27	1.99
54279529--54279619	35	2.6	35	78	3	103	42	17	9	29	1.82
54288284--54288308	12	2.1	12	100	0	50	48	0	0	52	1.00
54293392--54293434	21	2.0	23	86	9	63	51	2	6	39	1.42
54293398--54293454	21	2.8	21	82	12	57	59	1	5	33	1.30
54299875--54299946	37	1.9	37	88	5	110	29	31	18	20	1.96
54300093--54300473	48	7.8	48	87	6	570	31	26	6	35	1.81
54300096--54300473	98	3.9	98	95	0	677	31	26	6	35	1.82
54300489--54300607	23	5.1	22	62	28	59	24	30	13	31	1.93
54300443--54300636	47	4.1	47	91	0	298	26	28	10	33	1.90
54300395--54300636	94	2.6	93	86	4	308	27	28	10	33	1.89
54305083--54305139	27	2.0	29	90	6	91	59	3	1	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54305097--54305149	19	2.8	19	86	8	65	66	3	1	28	1.20
54305300--54305338	19	1.9	19	85	10	51	30	5	12	51	1.62
54305380--54305491	10	11.6	10	66	18	51	31	4	1	62	1.25
54305446--54305491	19	2.4	18	92	7	74	28	0	2	69	1.00
54305483--54305533	25	2.0	25	88	7	77	39	0	0	60	0.97
54312845--54312875	16	1.9	16	93	0	53	74	0	9	16	1.07
54314320--54314356	13	2.8	13	91	4	56	27	0	21	51	1.48
54314881--54314933	20	2.7	20	88	2	81	24	37	26	11	1.89
54317731--54318218	47	10.4	47	91	0	733	28	29	7	34	1.86
54318016--54318094	25	3.3	25	66	16	76	31	29	5	34	1.79
54320891--54321064	88	2.0	88	95	0	312	29	17	19	33	1.95
54323099--54323208	43	2.6	42	81	5	132	29	17	24	29	1.97
54328235--54328279	11	3.9	11	80	11	54	35	0	2	62	1.08
54329671--54329709	18	2.2	18	100	0	78	35	5	5	53	1.45
54330123--54330431	46	6.7	46	87	1	406	42	14	22	20	1.89
54330711--54330743	17	2.0	17	88	5	50	48	3	15	33	1.60
54338442--54338550	40	2.7	40	80	5	114	33	12	20	33	1.90
54344289--54344417	43	3.0	43	89	1	188	27	20	28	24	1.99
54344307--54344498	43	4.6	41	80	7	176	26	19	29	24	1.99
54348765--54348936	93	1.8	93	92	2	292	27	29	21	21	1.99
54348758--54348933	46	3.8	47	77	10	191	28	29	21	21	1.98
54354244--54354372	46	2.8	46	89	2	188	30	29	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54356813--54356842	15	2.0	15	93	0	51	63	0	6	30	1.20
54359634--54359724	47	1.9	47	84	0	119	24	17	24	34	1.96
54362215--54362494	30	9.4	30	77	6	196	26	23	11	39	1.88
54362329--54362491	60	2.7	60	82	7	222	25	23	12	38	1.90
54362477--54362551	29	2.5	30	80	8	91	20	29	9	41	1.83
54364172--54364222	26	2.0	25	81	11	59	52	0	5	41	1.25
54364150--54364227	30	2.5	31	81	6	88	51	1	5	42	1.32
54364934--54364980	15	3.0	16	75	12	53	38	2	0	59	1.09
54365757--54365795	12	3.1	12	85	10	51	58	0	0	41	0.98
54371779--54372332	279	2.0	279	86	2	781	34	13	18	33	1.90
54378617--54378652	18	1.9	19	88	5	56	55	0	2	41	1.14
54381011--54381155	70	2.1	70	100	0	290	26	12	8	53	1.66
54383146--54383185	15	2.7	15	100	0	80	22	20	22	35	1.96
54388091--54388194	43	2.4	42	85	6	129	29	20	25	24	1.99
54397683--54397734	25	2.1	25	100	0	104	34	13	28	23	1.92
54407323--54407363	21	1.9	22	85	5	57	48	17	14	19	1.81
54411554--54411698	40	3.6	40	85	4	175	24	24	24	26	2.00
54411518--54411698	81	2.3	80	82	2	204	25	24	23	25	2.00
54411522--54411698	40	4.5	39	79	4	133	25	24	24	25	2.00
54414355--54414400	24	1.9	25	86	8	69	32	15	6	45	1.71
54419159--54419219	30	2.0	30	83	0	77	31	22	8	37	1.84
54433937--54434063	35	3.6	34	73	9	105	29	22	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54436376--54436432	28	2.0	28	96	0	105	35	14	29	21	1.92
54445563--54445735	48	3.6	48	84	1	168	25	20	30	23	1.98
54445557--54445732	96	1.8	96	85	2	246	25	20	30	23	1.99
54451290--54451336	23	2.0	23	91	0	76	31	8	34	25	1.86
54456323--54456362	21	2.0	20	85	5	53	12	37	25	25	1.91
54464858--54465007	48	3.1	48	79	1	167	26	22	28	22	1.99
54474983--54475022	21	1.9	21	89	0	62	10	40	25	25	1.86
54478827--54479103	46	6.0	46	89	0	367	41	14	22	21	1.89
54478827--54479098	91	3.0	91	89	1	391	41	14	22	21	1.89
54478841--54479088	137	1.8	137	89	0	388	42	14	22	20	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345