genome.fa.s6.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  137  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46309268--46309441	93	1.9	93	86	8	223	28	17	25	28	1.97
46314879--46315146	49	5.6	48	76	9	219	23	28	19	28	1.98
46314923--46315146	93	2.4	92	81	8	236	22	28	20	28	1.98
46322853--46322983	49	2.7	49	82	4	149	22	25	22	29	1.99
46330479--46330541	10	6.8	9	76	8	56	34	1	3	60	1.22
46330488--46330542	9	5.9	10	81	12	55	34	0	3	61	1.13
46333579--46333691	43	2.7	43	79	10	117	32	23	17	26	1.97
46333683--46333757	37	2.0	37	92	0	123	30	20	24	25	1.98
46337768--46337807	16	2.4	17	95	4	73	32	12	20	35	1.90
46338208--46338255	24	2.0	24	91	0	78	37	18	22	20	1.94
46339670--46339736	33	2.0	33	97	0	125	35	14	17	31	1.91
46340120--46340189	35	2.0	35	91	0	113	42	12	17	27	1.85
46340736--46340960	113	2.0	113	85	1	308	32	15	15	36	1.89
46341166--46341207	20	2.1	20	95	0	75	61	4	7	26	1.42
46341665--46341709	23	2.0	23	100	0	90	48	17	15	17	1.81
46346320--46346359	21	1.9	21	94	0	71	27	20	30	22	1.98
46348082--46348196	27	4.3	26	81	5	113	38	23	21	16	1.93
46351733--46351845	27	4.2	27	81	7	122	16	23	23	36	1.94
46351733--46351851	54	2.2	54	85	5	161	17	23	22	36	1.95
46353869--46353907	19	2.1	19	95	0	69	15	46	15	23	1.83
46361600--46361634	12	2.8	12	95	4	61	5	48	25	20	1.71
46364888--46364975	27	3.3	27	84	4	115	19	23	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46366172--46366209	2	18.5	2	89	5	58	47	0	2	50	1.15
46367169--46367200	11	2.9	11	100	0	64	75	0	0	25	0.81
46372326--46372407	38	2.2	38	97	0	155	47	19	7	25	1.75
46384052--46384134	31	2.7	31	94	3	143	28	26	15	28	1.96
46384354--46384423	25	2.8	25	84	0	95	24	24	24	27	2.00
46386377--46386562	40	4.7	40	89	2	277	30	26	19	23	1.98
46394406--46394614	40	5.3	40	86	3	239	26	26	22	24	2.00
46394406--46394614	79	2.7	80	82	5	223	26	26	22	24	2.00
46396576--46396641	27	2.4	27	82	5	80	19	21	19	39	1.93
46396694--46396779	27	3.1	26	73	17	75	33	9	17	39	1.82
46396781--46396880	27	3.7	27	81	4	130	28	8	24	40	1.83
46396782--46396920	27	5.1	27	74	9	95	28	10	23	36	1.89
46396900--46397004	27	3.9	26	80	10	97	42	10	19	27	1.83
46396912--46397004	27	3.4	27	88	2	132	43	9	20	26	1.83
46396984--46397042	27	2.2	27	84	0	73	28	8	20	42	1.81
46399239--46399402	56	2.9	56	88	5	217	31	15	28	24	1.96
46399239--46399367	28	4.6	28	79	6	136	31	16	27	24	1.96
46399453--46399576	32	3.9	32	82	0	140	39	12	22	25	1.89
46402577--46402747	93	1.8	93	92	0	288	29	28	20	21	1.98
46402573--46402744	46	3.7	46	80	10	206	30	27	20	21	1.98
46408727--46408824	28	3.5	27	77	10	108	25	16	30	27	1.96
46408726--46408853	56	2.3	56	88	0	184	28	17	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46408774--46408852	28	2.8	28	78	0	95	31	20	24	24	1.98
46408726--46408889	56	2.9	56	85	1	168	28	17	28	26	1.97
46411506--46411707	40	5.1	40	89	4	286	22	22	28	26	1.99
46418556--46418796	40	6.0	40	88	2	326	22	21	28	26	1.99
46421788--46421852	28	2.3	28	91	0	103	32	27	9	30	1.88
46421958--46422045	28	3.2	27	82	14	110	20	23	23	31	1.98
46421958--46422045	25	3.2	27	81	14	101	20	23	23	31	1.98
46423129--46423162	10	3.3	10	84	8	50	29	8	8	52	1.62
46429625--46429689	28	2.3	28	91	0	103	32	27	9	30	1.88
46429795--46429884	28	3.2	27	85	7	119	20	24	23	32	1.98
46429795--46429909	55	2.1	56	83	8	146	19	24	21	34	1.96
46432564--46432635	33	2.1	34	84	2	92	26	19	26	27	1.99
46436371--46436415	20	2.2	20	100	0	90	46	4	11	37	1.60
46437453--46437565	57	2.0	57	96	0	208	26	14	15	43	1.85
46445457--46445606	42	3.6	42	82	7	155	30	23	14	32	1.94
46453009--46453060	26	2.0	26	100	0	104	26	23	3	46	1.69
46453633--46453666	17	1.9	18	88	5	52	38	5	5	50	1.51
46453848--46453889	16	2.6	16	85	7	59	52	0	2	45	1.13
46465825--46465883	31	1.9	31	85	0	82	33	27	10	28	1.89
46481403--46481661	139	1.9	139	91	1	430	35	19	20	23	1.96
46486889--46487281	47	8.3	47	90	2	606	27	29	8	34	1.87
46486889--46487281	96	4.1	94	89	2	606	27	29	8	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46486894--46487281	143	2.7	143	91	0	632	27	29	9	34	1.87
46492966--46493124	43	3.7	43	73	11	112	34	22	16	26	1.95
46495042--46495080	21	1.9	20	94	5	69	17	30	41	10	1.83
46496249--46496521	48	5.7	47	76	8	225	24	30	19	26	1.98
46506816--46506900	31	2.8	31	91	3	138	24	27	17	30	1.97
46507105--46507160	26	2.2	27	84	12	82	33	17	21	26	1.96
46511977--46512076	51	2.0	51	83	0	128	25	16	28	31	1.96
46514569--46514604	13	2.8	13	86	0	54	50	22	11	16	1.77
46517674--46517931	40	6.5	40	89	4	355	26	28	22	22	1.99
46527727--46527904	27	6.6	27	83	3	205	26	15	28	29	1.96
46527728--46527883	82	1.9	81	88	3	233	26	15	28	29	1.96
46527724--46527904	82	2.2	81	83	2	229	27	15	27	29	1.96
46535693--46535870	27	6.6	27	83	3	205	26	15	28	29	1.96
46535694--46535849	82	1.9	81	88	3	233	26	15	28	29	1.96
46535690--46535870	82	2.2	81	83	2	229	27	15	27	29	1.96
46537207--46537375	40	4.2	40	90	3	261	26	27	23	21	1.99
46541557--46541590	17	2.0	17	100	0	68	35	17	23	23	1.95
46553062--46553121	27	2.3	26	82	2	66	33	20	23	23	1.97
46553480--46553510	11	2.8	11	100	0	62	9	29	29	32	1.89
46553794--46553908	27	4.3	26	77	10	106	23	19	20	37	1.94
46553798--46553912	54	2.1	54	87	1	160	23	20	18	37	1.94
46553811--46553911	27	3.7	27	85	0	139	23	17	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46562459--46562726	47	5.8	46	74	12	167	27	19	29	23	1.98
46562462--46562729	94	2.9	93	81	6	319	27	20	29	23	1.98
46563463--46563581	55	2.2	55	86	3	159	21	23	30	24	1.99
46566293--46566366	29	2.6	29	89	4	105	25	16	32	25	1.96
46569081--46569227	56	2.6	56	83	0	186	35	24	14	25	1.93
46575714--46575795	26	3.2	26	96	0	146	31	7	24	36	1.83
46579641--46579673	13	2.6	13	85	4	50	45	24	0	30	1.53
46582117--46582291	56	3.1	56	83	4	158	36	24	12	26	1.91
46586687--46586716	2	15.0	2	100	0	60	50	0	50	0	1.00
46588936--46589005	25	2.8	25	84	4	97	25	22	24	27	2.00
46589039--46589103	21	3.0	21	84	2	76	33	16	12	36	1.87
46602698--46602767	25	2.8	25	75	0	68	25	18	24	31	1.98
46615051--46615135	44	1.9	44	90	0	134	20	20	29	30	1.97
46619890--46620075	20	9.3	20	67	11	94	15	28	18	37	1.91
46619865--46620099	40	5.9	40	80	0	227	15	28	18	37	1.92
46622819--46622875	30	1.9	30	85	7	80	31	22	7	38	1.81
46632369--46632433	25	2.6	24	81	13	69	33	7	1	56	1.37
46636816--46636872	29	1.9	30	85	3	80	35	1	8	54	1.42
46638611--46638645	18	1.9	18	100	0	70	31	5	0	62	1.18
46644308--46644411	26	4.0	26	92	0	172	35	23	7	33	1.83
46646057--46646189	24	5.7	24	84	4	155	36	20	19	23	1.95
46646051--46646191	72	2.0	69	83	4	174	37	19	20	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46660730--46660765	18	2.0	18	100	0	72	50	0	22	27	1.50
46664394--46664540	73	2.0	74	91	1	242	27	20	13	38	1.90
46664394--46664540	37	4.0	37	92	1	242	27	20	13	38	1.90
46672040--46672224	37	5.0	37	95	0	325	27	20	13	38	1.90
46675974--46676073	32	3.2	32	69	13	109	48	6	4	42	1.46
46685571--46685757	96	1.9	96	84	4	252	26	19	28	25	1.99
46685576--46685757	48	3.8	48	78	4	179	26	20	28	24	1.99
46695198--46695251	27	2.0	27	85	0	72	38	9	12	38	1.76
46695497--46695643	49	3.0	50	86	2	224	26	17	27	28	1.97
46695497--46695687	99	1.9	98	80	10	219	27	17	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345