genome.fa.s6.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  183  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61788091--61788178	27	3.3	27	81	10	101	35	19	23	21	1.96
61788979--61789062	25	3.4	25	86	6	118	28	21	23	26	1.99
61789268--61789346	31	2.5	31	95	0	140	30	18	24	26	1.98
61800937--61800983	19	2.5	19	96	0	85	23	23	36	17	1.95
61814323--61814679	47	7.6	47	91	1	561	32	8	29	29	1.87
61816233--61816291	25	2.4	25	91	5	93	23	23	20	32	1.98
61817101--61817178	27	2.9	27	79	11	88	20	20	21	37	1.95
61817196--61817448	27	9.3	27	77	5	134	32	9	19	38	1.84
61817196--61817448	110	2.3	108	80	4	267	32	9	19	38	1.84
61817310--61817448	54	2.6	54	81	4	163	30	8	20	39	1.83
61817427--61817583	27	5.8	27	87	0	206	40	6	22	30	1.79
61817399--61817574	81	2.2	81	83	0	208	40	6	21	31	1.79
61817427--61817583	81	1.9	81	90	0	251	40	6	22	30	1.79
61818820--61818879	24	2.5	24	97	0	111	35	0	36	28	1.58
61820307--61820418	27	4.2	26	80	7	125	16	23	22	37	1.94
61820307--61820418	54	2.1	54	86	3	154	16	23	22	37	1.94
61821471--61821504	10	3.3	10	84	8	50	29	8	8	52	1.62
61824537--61824718	40	4.6	39	83	6	217	23	26	23	26	2.00
61832746--61832959	40	5.5	40	91	5	316	24	28	23	24	2.00
61832746--61832959	79	2.7	79	90	6	305	24	28	23	24	2.00
61839805--61839916	27	4.2	26	78	7	116	16	22	23	38	1.93
61845143--61845258	39	3.0	39	89	0	187	27	29	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61851641--61851757	39	3.0	39	91	0	180	29	28	19	22	1.98
61851593--61851757	78	2.1	78	81	5	183	29	29	20	21	1.98
61860571--61860856	40	7.2	40	91	4	397	24	27	22	24	2.00
61866183--61866298	42	2.8	42	78	0	124	28	15	25	31	1.96
61870638--61870752	27	4.3	27	85	7	144	20	21	21	36	1.95
61875445--61875497	27	2.0	25	82	7	61	56	9	16	16	1.65
61876340--61876525	96	1.9	96	88	6	279	33	18	12	34	1.89
61891549--61891943	27	14.7	27	80	5	244	38	20	8	31	1.83
61891954--61892005	27	1.9	27	88	7	79	38	13	13	34	1.84
61892050--61892146	27	3.6	27	84	5	108	32	22	23	20	1.98
61892885--61892915	16	1.9	16	93	0	53	29	22	12	35	1.91
61892949--61893098	26	5.8	26	87	0	203	28	22	22	27	1.99
61892949--61893098	78	1.9	77	90	4	239	28	22	22	27	1.99
61895559--61895912	27	13.3	27	73	12	128	39	20	7	31	1.81
61895709--61895884	26	6.7	26	78	13	184	40	19	8	31	1.82
61895657--61895913	54	4.9	53	76	10	172	41	20	7	30	1.80
61895923--61895973	27	1.9	26	88	11	77	39	11	13	35	1.82
61896024--61896111	27	3.3	26	88	4	115	36	20	23	19	1.95
61896901--61897079	24	7.3	25	80	9	185	29	20	22	28	1.98
61896901--61897074	48	3.6	49	88	6	234	29	20	21	28	1.98
61897284--61897353	27	2.5	29	81	9	99	30	20	21	28	1.98
61899361--61899536	40	4.5	40	79	10	170	26	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61907490--61907674	79	2.3	81	83	7	227	24	22	27	24	2.00
61907491--61907674	40	4.6	40	82	9	207	25	22	27	24	2.00
61907543--61907707	79	2.1	79	83	6	201	26	21	27	24	1.99
61916560--61916674	29	4.0	28	75	10	99	28	28	15	26	1.96
61921148--61921187	18	2.2	19	86	13	57	12	37	30	20	1.89
61923768--61923853	28	3.0	28	84	3	109	27	27	15	29	1.96
61927684--61927859	50	3.5	49	85	1	226	25	17	26	30	1.97
61935144--61935342	62	3.1	62	68	25	178	48	4	33	13	1.63
61935089--61935353	130	2.0	131	94	0	469	47	5	32	13	1.66
61939454--61939479	13	2.0	13	100	0	52	30	0	7	61	1.24
61940853--61941098	40	6.2	40	90	1	379	23	21	26	28	1.99
61945132--61945179	25	1.9	25	100	0	96	39	4	29	27	1.75
61951715--61951934	40	5.7	40	78	9	204	25	27	20	25	1.99
61951788--61951927	75	1.9	75	82	5	176	25	27	20	27	1.99
61951866--61951943	40	1.9	41	82	10	97	26	28	20	24	1.99
61955364--61955394	15	2.1	15	100	0	62	32	0	19	48	1.49
61966486--61966640	67	2.3	66	80	8	170	23	27	14	34	1.94
61976573--61976657	33	2.6	33	82	0	98	28	20	22	29	1.98
61977304--61977394	27	3.4	27	80	3	105	36	20	21	20	1.95
61977522--61977609	27	3.3	27	80	0	95	25	13	23	37	1.92
61977600--61977670	27	2.6	27	86	4	90	35	14	16	33	1.89
61978553--61978687	39	3.5	39	92	0	216	31	24	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61986126--61986347	40	5.6	40	92	1	340	26	22	26	25	2.00
61997943--61998167	47	4.7	47	76	11	201	24	28	19	27	1.99
61997946--61998122	96	1.8	96	87	8	268	24	29	18	26	1.98
61998690--61998764	30	2.5	30	97	0	141	33	28	9	29	1.88
62000457--62000539	33	2.5	32	75	11	87	26	22	18	32	1.97
62004915--62004972	22	2.6	22	81	7	64	41	17	5	36	1.72
62004951--62005022	19	3.9	19	85	10	114	37	15	9	37	1.80
62004944--62005022	35	2.2	37	84	13	112	36	16	8	37	1.80
62004983--62005020	17	2.5	15	87	12	51	34	15	10	39	1.82
62005401--62005571	45	3.8	45	88	3	238	26	29	13	30	1.94
62005401--62005570	89	1.9	89	90	2	270	27	29	13	30	1.94
62005399--62005660	134	1.9	136	81	5	316	26	27	15	30	1.96
62005600--62005893	78	3.8	78	88	3	441	24	22	18	33	1.97
62006119--62006784	87	7.6	87	79	6	643	30	26	14	28	1.95
62006453--62006769	44	7.2	44	75	9	261	27	27	16	28	1.97
62006119--62006681	262	2.1	262	83	5	674	31	25	14	27	1.95
62006207--62006784	175	3.3	174	87	3	729	29	26	15	28	1.96
62007737--62007780	8	5.8	8	78	10	56	0	13	0	86	0.57
62007737--62007769	9	3.7	9	92	8	50	0	12	0	87	0.53
62007739--62007781	22	2.0	22	95	0	77	0	13	0	86	0.58
62007752--62007915	83	2.0	83	85	9	228	15	20	11	51	1.74
62013065--62013098	17	2.0	17	88	0	50	38	14	8	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62013082--62013123	19	2.2	19	95	0	75	35	19	9	35	1.84
62013888--62014013	55	2.2	58	84	4	168	53	3	0	42	1.19
62013888--62014044	58	2.8	55	75	15	142	54	3	0	41	1.23
62015597--62015630	15	2.2	16	89	5	52	73	8	5	11	1.24
62022436--62022544	37	2.9	37	93	0	182	26	30	19	23	1.98
62022690--62022876	48	3.8	48	87	5	277	31	26	6	35	1.83
62022846--62023039	47	4.1	47	87	0	271	27	28	10	33	1.90
62022939--62023010	22	3.1	22	66	24	58	25	29	12	33	1.92
62022799--62023039	94	2.6	94	82	4	272	28	28	9	33	1.88
62025729--62025757	2	14.5	2	100	0	58	51	0	48	0	1.00
62029635--62029759	45	2.8	45	93	0	223	22	23	27	27	1.99
62030335--62030367	16	1.9	18	88	11	52	24	15	12	48	1.78
62039536--62039603	33	2.1	33	88	0	100	47	16	7	29	1.73
62039892--62039924	11	3.1	11	86	8	50	42	30	0	27	1.56
62040135--62040263	24	5.5	23	77	10	111	31	19	21	27	1.97
62045331--62045480	68	2.2	68	86	6	203	22	28	17	32	1.96
62045331--62045526	68	2.8	67	81	8	189	23	27	16	31	1.96
62048934--62049051	60	2.0	60	98	0	227	27	11	26	35	1.90
62049340--62049412	31	2.4	31	85	0	92	21	19	10	47	1.79
62049368--62049437	25	2.8	25	97	0	131	21	22	10	45	1.81
62049380--62049426	13	3.7	13	72	16	53	21	25	10	42	1.85
62049340--62049458	6	19.3	6	66	17	57	21	19	11	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62049340--62049437	25	3.6	28	86	8	100	21	20	11	46	1.81
62051213--62051460	50	5.0	50	80	2	266	31	25	17	25	1.97
62051213--62051455	101	2.4	101	84	1	301	31	25	17	25	1.97
62051472--62051504	14	2.5	13	90	9	50	42	27	9	21	1.83
62051217--62051503	151	1.9	149	84	3	378	33	25	16	25	1.96
62057910--62058094	40	4.7	40	82	7	209	24	22	27	25	2.00
62057963--62058127	79	2.1	79	84	6	210	25	21	27	25	1.99
62060880--62060912	11	3.1	11	86	8	50	42	30	0	27	1.56
62061154--62061249	23	4.2	23	72	16	83	30	19	21	28	1.98
62068037--62068075	18	2.2	17	86	13	53	33	0	20	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345