genome.fa.s6.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  107  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35411152--35411300	40	3.7	40	86	3	201	21	13	28	36	1.91
35417414--35417544	6	21.3	6	66	16	63	50	12	17	19	1.78
35417435--35417544	31	3.4	31	72	14	94	50	12	18	19	1.78
35417423--35417544	37	3.5	37	74	13	121	50	12	18	18	1.77
35417765--35417816	27	2.0	26	84	3	68	34	21	26	17	1.95
35418052--35418245	27	7.2	27	86	2	237	40	5	22	31	1.76
35418196--35418289	27	3.5	27	77	8	84	32	7	21	38	1.81
35418073--35418272	81	2.5	81	80	4	226	39	6	22	32	1.79
35418304--35418368	27	2.4	27	80	10	71	33	9	18	38	1.83
35419646--35419717	36	2.0	36	88	0	108	22	38	19	19	1.93
35423103--35423154	26	2.0	26	96	0	95	28	34	23	13	1.92
35423205--35423257	26	2.0	26	96	0	97	28	35	22	13	1.92
35423071--35423335	103	2.6	103	92	3	435	29	30	20	19	1.97
35423664--35423727	30	2.2	29	81	10	76	29	28	6	35	1.82
35423671--35423727	30	1.9	30	85	3	80	29	24	7	38	1.82
35430553--35430818	103	2.6	104	92	1	428	30	30	20	18	1.96
35431143--35431206	30	2.2	29	81	10	76	29	28	6	35	1.82
35431150--35431206	30	1.9	30	85	3	80	29	24	7	38	1.82
35434457--35434516	27	2.2	27	79	5	68	33	23	18	25	1.97
35447039--35447088	23	2.2	23	86	13	68	42	20	14	24	1.88
35447122--35447216	27	3.5	27	80	0	91	20	22	17	40	1.92
35447139--35447227	27	3.3	27	80	3	90	20	17	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35447150--35447236	27	3.2	27	77	6	70	18	19	17	44	1.87
35447231--35447492	27	9.7	27	87	1	310	34	16	15	33	1.90
35447733--35447757	2	12.5	2	100	0	50	52	0	48	0	1.00
35452855--35452913	20	2.8	21	75	17	68	45	22	18	13	1.84
35454167--35454209	20	2.2	20	91	0	68	44	23	23	9	1.82
35465486--35465638	43	3.6	43	75	9	150	30	16	21	31	1.95
35465497--35465654	86	1.8	85	83	4	210	29	17	22	30	1.96
35481514--35481674	42	3.8	42	85	1	196	31	23	14	31	1.94
35483168--35483199	14	2.4	13	90	10	55	62	12	6	18	1.50
35485639--35485726	6	14.3	6	73	17	74	47	14	18	19	1.82
35485648--35485726	31	2.5	31	91	0	122	48	13	18	18	1.81
35486156--35486754	27	22.2	27	85	3	722	26	18	18	36	1.93
35486743--35486813	26	2.6	27	82	6	83	32	8	19	39	1.82
35486631--35486834	27	7.7	26	77	6	122	26	11	21	40	1.88
35486442--35486834	54	7.3	52	76	9	149	27	14	19	38	1.91
35488348--35488451	26	4.0	26	93	0	181	32	7	24	35	1.84
35490140--35490171	14	2.3	14	100	0	64	0	6	62	31	1.20
35503251--35503414	42	3.9	42	84	1	202	29	23	17	29	1.97
35506159--35506215	23	2.5	22	83	11	62	45	28	12	14	1.80
35507930--35508004	37	2.0	37	82	10	91	25	38	1	34	1.64
35510908--35511080	47	3.7	47	86	8	221	26	18	32	22	1.97
35510908--35511080	94	1.8	95	87	8	264	26	18	32	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35520730--35520945	46	4.6	46	81	10	208	28	18	28	24	1.98
35520780--35520998	47	4.7	46	79	14	184	28	18	29	23	1.98
35520735--35520992	140	1.8	140	82	6	335	29	17	28	24	1.98
35527432--35527572	51	2.8	51	92	4	232	29	24	12	32	1.93
35527596--35527696	28	3.8	28	81	10	129	25	25	16	31	1.97
35533038--35533067	16	1.9	16	93	6	53	30	0	20	50	1.49
35539523--35539653	65	2.0	65	92	0	217	40	25	11	22	1.87
35546106--35546167	31	2.0	32	83	3	81	35	17	24	22	1.95
35549170--35549309	76	1.9	75	86	1	199	57	8	2	30	1.43
35549242--35549562	159	2.0	160	96	0	590	40	16	8	34	1.78
35550913--35550975	18	3.6	18	72	10	58	52	6	3	38	1.43
35551053--35551116	32	2.0	33	84	3	85	71	1	4	21	1.12
35551050--35551095	21	2.4	19	80	16	58	76	0	4	19	0.96
35554067--35554253	50	3.8	49	79	7	189	25	18	27	27	1.98
35558635--35558680	3	15.3	3	100	0	92	67	0	0	32	0.91
35561932--35561978	3	15.7	3	100	0	94	65	0	0	34	0.93
35562632--35562671	20	2.0	20	90	0	62	27	10	12	50	1.72
35562618--35562683	35	1.9	34	90	6	107	31	7	13	46	1.71
35563296--35563334	18	2.2	18	100	0	78	46	10	0	43	1.37
35565007--35565043	19	1.9	19	94	0	65	45	8	45	0	1.32
35570129--35570195	29	2.4	27	73	9	71	43	10	8	37	1.71
35570131--35570189	29	2.0	29	83	0	73	47	10	6	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35573502--35573538	18	2.1	18	100	0	74	29	10	27	32	1.90
35574179--35574220	20	2.3	19	88	12	61	16	4	11	66	1.40
35576604--35576637	8	4.2	8	96	0	59	14	0	0	85	0.60
35576904--35577607	236	3.0	235	88	2	1011	46	11	18	23	1.82
35581189--35581434	27	9.3	26	75	11	173	42	20	15	21	1.89
35581423--35581547	27	4.7	25	77	9	106	26	17	18	37	1.93
35581396--35581525	54	2.4	53	78	5	136	30	19	15	34	1.93
35581423--35581547	54	2.3	54	81	0	142	26	17	18	37	1.93
35581476--35581558	27	3.1	26	79	6	85	24	19	21	34	1.96
35581895--35581937	18	2.4	18	88	0	68	20	13	11	53	1.71
35589142--35589324	79	2.3	81	83	7	223	24	22	27	24	2.00
35589143--35589326	40	4.6	40	82	9	207	24	22	28	24	2.00
35589195--35589359	79	2.1	79	83	6	201	26	21	27	24	1.99
35596195--35596393	40	5.0	40	83	6	226	24	22	27	26	2.00
35607037--35607070	13	2.7	13	86	4	52	23	0	0	76	0.79
35614558--35614591	18	1.9	17	94	5	59	20	35	29	14	1.93
35618669--35618852	78	2.3	81	84	6	234	25	27	22	25	2.00
35618669--35618852	40	4.7	40	83	6	232	25	27	22	25	2.00
35626650--35626873	40	5.7	40	82	5	231	25	27	21	25	1.99
35626650--35626873	79	2.8	77	80	7	245	25	27	21	25	1.99
35626805--35626882	40	1.9	41	82	10	97	26	28	20	24	1.99
35632891--35632953	29	2.2	29	88	2	92	26	28	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35632891--35632976	28	3.0	28	83	3	91	26	26	15	31	1.95
35634272--35634308	8	4.6	8	86	0	56	13	8	32	45	1.73
35635816--35635905	46	2.0	45	95	2	162	24	20	25	30	1.99
35636565--35636595	2	15.5	2	93	0	53	0	45	0	54	0.99
35638771--35638870	40	2.5	40	75	6	121	41	18	23	18	1.91
35640658--35640743	20	4.2	20	76	10	77	38	25	25	10	1.88
35641293--35641318	7	3.7	7	100	0	52	30	30	11	26	1.92
35652790--35652967	94	1.9	95	85	1	250	26	20	29	22	1.99
35652751--35653105	46	7.5	46	71	10	186	27	20	28	23	1.99
35652788--35653106	48	6.7	49	73	10	216	26	19	29	23	1.98
35658934--35659038	40	2.6	41	76	8	108	35	20	15	28	1.93
35666894--35666958	28	2.3	28	86	0	94	32	26	7	33	1.85
35667065--35667154	28	3.2	28	84	10	121	22	22	22	33	1.97
35667074--35667165	28	3.2	28	87	4	96	23	25	18	32	1.97
35667606--35667648	18	2.4	18	80	0	59	25	2	4	67	1.22
35681872--35682091	94	2.3	94	82	4	264	27	21	29	21	1.99
35681872--35682226	46	7.5	46	71	10	186	26	20	29	23	1.99
35682103--35682227	49	2.5	49	81	3	144	27	20	30	22	1.98
35687035--35687106	36	2.0	36	100	0	144	30	22	25	22	1.99
35688091--35688195	40	2.6	41	76	8	108	35	20	15	28	1.93
35691563--35691632	27	2.6	27	90	2	104	31	28	11	28	1.92
35691563--35691660	28	3.5	28	87	2	126	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35699162--35699226	28	2.3	28	86	0	94	32	26	7	33	1.85
35699332--35699422	28	3.2	28	87	4	130	23	24	20	31	1.98
35699332--35699447	56	2.1	55	82	9	137	21	24	19	34	1.96
35699876--35699916	18	2.3	18	86	0	55	24	2	4	68	1.22
35723042--35723097	29	2.0	29	85	3	78	17	41	21	19	1.91
35728216--35728296	33	2.4	35	75	10	87	30	23	17	28	1.97
35728599--35728651	26	2.0	26	85	7	72	20	16	22	39	1.92
35729898--35729957	24	2.4	25	86	8	79	20	41	5	33	1.74
35736107--35736187	33	2.4	35	77	10	96	32	23	16	28	1.96
35745168--35745411	40	6.2	40	91	3	361	25	21	27	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345