genome.fa.s6.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  123  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41336387--41336421	18	1.9	18	94	0	61	34	20	14	31	1.92
41339677--41339832	43	3.6	43	78	8	140	28	13	24	33	1.93
41343589--41343758	43	4.0	43	78	9	159	25	14	25	34	1.93
41347648--41347881	112	2.1	112	97	0	441	22	26	26	23	2.00
41349033--41349120	45	2.0	45	93	0	149	38	25	13	22	1.91
41349055--41349124	21	3.2	21	65	15	52	40	24	12	22	1.89
41358755--41358786	15	2.1	15	100	0	64	31	18	15	34	1.93
41361749--41361787	14	2.8	14	100	0	78	25	7	7	58	1.52
41365514--41365639	55	2.3	54	82	9	148	28	30	25	15	1.95
41371186--41371233	25	1.9	25	100	0	96	12	8	25	54	1.65
41376475--41376590	48	2.4	48	85	2	144	27	26	18	27	1.98
41378238--41378290	16	3.3	16	76	5	54	37	15	16	30	1.90
41384465--41384716	23	10.7	23	78	7	227	31	23	18	26	1.97
41385306--41385560	137	1.9	137	83	1	332	20	21	25	32	1.98
41385305--41385651	137	2.5	137	78	4	322	21	19	25	33	1.97
41389198--41389239	21	2.0	20	86	4	57	50	0	16	33	1.46
41394111--41394376	137	1.9	137	82	0	334	21	20	25	32	1.97
41400096--41400207	55	2.1	54	98	1	215	33	5	17	42	1.72
41401038--41401191	42	3.6	42	83	3	148	31	14	24	29	1.95
41404320--41404354	18	1.9	18	88	0	52	51	8	34	5	1.56
41409093--41409151	25	2.4	25	88	0	82	23	22	22	32	1.98
41409795--41409836	20	2.2	19	83	12	50	59	4	16	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41413216--41413251	15	2.4	15	100	0	72	33	13	0	52	1.41
41414140--41414171	17	1.9	16	93	6	55	50	0	0	50	1.00
41414163--41414198	19	1.9	18	88	5	54	55	0	2	41	1.14
41416958--41417011	22	2.5	22	84	0	72	44	25	18	11	1.83
41417214--41417278	22	3.0	22	80	8	78	30	23	26	20	1.98
41417421--41417502	41	2.0	41	95	0	146	25	28	23	23	2.00
41417761--41417838	27	2.9	27	81	7	95	29	14	16	39	1.88
41419247--41419302	20	2.8	20	84	10	87	21	28	0	50	1.49
41419347--41419387	21	2.0	21	90	0	64	43	12	9	34	1.75
41425267--41425442	46	3.8	46	78	15	191	28	28	19	22	1.98
41425276--41425446	93	1.8	93	91	0	279	28	29	20	21	1.98
41426557--41426581	9	2.8	9	100	0	50	36	12	0	52	1.39
41430735--41430794	28	2.2	26	77	11	66	26	26	11	35	1.91
41430749--41430820	28	2.6	28	86	0	81	29	26	12	31	1.93
41432540--41432630	45	2.0	45	93	0	155	27	12	23	37	1.90
41444064--41444150	44	2.0	44	84	4	113	35	13	27	22	1.92
41445779--41445900	47	2.6	47	93	0	199	37	12	23	26	1.90
41445887--41446076	53	3.5	53	85	5	274	33	18	26	21	1.97
41446461--41446513	22	2.2	24	83	12	74	71	3	18	5	1.21
41446458--41446512	27	1.9	30	82	17	73	72	3	18	5	1.18
41447996--41448057	23	2.8	22	78	7	81	14	17	25	41	1.88
41449159--41449286	53	2.4	53	82	5	150	34	18	25	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41449388--41449421	16	2.1	16	88	5	50	41	5	17	35	1.74
41466156--41466342	78	2.4	80	93	3	317	25	22	27	24	2.00
41466156--41466375	80	2.8	79	87	7	315	26	22	26	24	2.00
41466156--41466342	40	4.7	40	92	5	317	25	22	27	24	2.00
41468181--41468225	22	2.0	22	100	0	90	28	22	17	31	1.97
41470419--41470457	19	2.1	19	90	0	60	12	10	5	71	1.28
41472742--41472792	26	2.0	26	96	0	93	13	23	33	29	1.93
41472665--41473030	103	3.6	104	93	2	600	19	20	29	30	1.97
41480320--41480370	26	2.0	26	96	0	93	11	23	35	29	1.90
41480242--41480606	102	3.6	102	94	2	610	19	20	29	30	1.97
41495287--41495420	59	2.3	59	89	0	205	32	8	19	39	1.83
41495515--41495591	3	25.7	3	92	5	129	0	2	31	66	1.05
41500684--41500835	65	2.3	65	85	0	205	22	19	20	37	1.94
41500875--41501044	26	6.8	26	70	14	108	20	18	19	41	1.91
41512146--41512188	23	1.9	23	85	4	61	46	6	0	46	1.30
41518861--41518924	31	2.1	31	90	0	101	23	21	15	39	1.92
41519135--41519210	24	3.2	24	92	3	127	30	21	18	30	1.97
41519137--41519209	23	3.1	23	94	2	119	31	20	19	28	1.97
41519260--41519324	20	3.2	20	93	0	112	32	21	12	33	1.90
41519260--41519313	11	5.3	11	70	17	53	31	20	12	35	1.90
41522305--41522496	40	4.9	40	86	7	277	24	27	21	26	2.00
41522312--41522496	76	2.4	80	87	7	272	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41524588--41524645	28	2.1	28	100	0	116	22	31	15	31	1.95
41530377--41530598	40	5.6	40	86	3	297	23	26	22	27	1.99
41533201--41533244	19	2.4	18	85	7	54	40	9	0	50	1.34
41534698--41534743	22	2.1	22	100	0	92	26	19	21	32	1.97
41540398--41540442	5	9.0	5	100	0	90	80	0	0	20	0.72
41546806--41546977	47	3.7	46	77	9	136	22	30	19	27	1.98
41562291--41562418	49	2.6	49	79	7	134	20	27	25	27	1.99
41562441--41562559	48	2.5	48	85	0	166	23	29	17	29	1.97
41574422--41574483	20	3.4	20	70	25	73	22	0	17	59	1.37
41574420--41574486	34	2.0	34	100	0	134	23	0	17	58	1.39
41574432--41574486	17	3.2	17	68	27	53	23	0	20	56	1.42
41577517--41577563	24	1.9	25	95	4	87	57	0	2	40	1.11
41582363--41582519	84	1.9	84	86	0	224	29	19	21	29	1.97
41582360--41582519	28	5.7	28	82	2	178	30	19	21	29	1.97
41585169--41585242	29	2.6	29	86	4	96	27	16	31	25	1.96
41601662--41601783	46	2.7	46	81	7	115	24	30	18	26	1.98
41607815--41607882	34	2.0	34	97	0	127	32	11	22	33	1.90
41620964--41621015	17	3.3	17	69	20	58	36	28	3	30	1.75
41620951--41621026	30	2.6	29	91	6	109	40	30	2	26	1.69
41624788--41624815	6	4.7	6	100	0	56	14	0	0	85	0.59
41627099--41627218	43	2.8	42	79	7	143	25	25	19	30	1.98
41630219--41630262	3	14.7	3	80	0	52	63	0	4	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41630784--41630824	15	2.7	15	82	14	57	73	4	2	19	1.13
41630664--41630811	3	48.0	3	71	11	95	63	2	5	29	1.28
41630708--41630826	9	12.8	9	71	13	62	65	3	4	26	1.27
41632191--41632915	88	8.5	88	83	8	615	21	24	21	32	1.98
41632178--41632915	176	4.3	174	81	8	733	22	23	21	32	1.98
41632609--41632915	77	3.8	77	88	4	398	22	21	21	34	1.97
41632756--41632913	43	3.6	42	72	11	140	20	20	22	36	1.96
41632754--41632916	87	1.9	87	92	0	272	20	20	22	36	1.95
41642025--41642216	40	4.8	40	91	3	219	27	27	20	23	1.99
41650137--41650347	40	5.3	40	88	2	248	28	27	20	23	1.99
41653412--41653594	67	2.8	63	76	9	183	30	16	29	22	1.96
41657812--41657961	67	2.2	67	81	8	171	32	17	28	21	1.96
41657836--41658019	67	2.8	64	77	8	194	30	17	28	22	1.97
41660791--41660835	22	2.0	22	83	8	56	17	22	2	57	1.50
41666366--41666394	9	3.0	10	90	10	51	20	20	0	58	1.39
41677199--41677494	131	2.3	131	84	0	358	39	13	14	31	1.86
41681045--41681117	36	2.0	36	97	0	137	38	1	16	43	1.56
41685495--41685564	27	2.6	27	93	2	113	31	27	12	28	1.93
41693361--41693401	19	2.1	19	86	9	55	24	31	0	43	1.54
41703074--41703130	10	5.4	10	76	12	60	71	1	5	21	1.14
41709337--41709723	195	2.0	194	89	1	587	46	12	6	34	1.69
41709785--41709856	29	2.6	29	84	4	94	65	0	1	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41709786--41709854	10	6.9	10	73	15	54	63	0	1	34	1.03
41711698--41711917	49	4.6	49	70	12	161	29	17	28	24	1.97
41719478--41719608	49	2.7	49	92	0	217	24	21	29	25	1.99
41724134--41724576	219	2.0	220	85	2	595	32	14	19	33	1.92
41726355--41726431	22	3.5	22	72	10	75	27	22	12	37	1.91
41726331--41726430	45	2.2	44	82	1	137	31	21	13	35	1.91
41731716--41731817	41	2.5	41	84	4	136	29	15	25	29	1.96
41741130--41741315	40	4.6	40	77	7	171	29	15	23	32	1.95
41745059--41745105	24	2.0	24	95	0	85	12	25	14	46	1.80
41747639--41747700	27	2.3	26	78	8	70	37	0	11	51	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345