Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  141  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47612833--47612965
46
2.9
46
87
5
171
22
20
24
32
1.98
47631669--47631731
29
2.2
29
100
0
126
34
3
22
39
1.70
47633275--47633386
18
6.2
18
75
0
107
34
15
14
35
1.87
47633275--47633386
36
3.1
36
82
0
134
34
15
14
35
1.87
47633550--47633640
44
2.1
44
83
4
112
34
21
20
23
1.97
47634906--47634989
28
3.2
27
65
25
72
23
16
28
30
1.96
47634850--47635046
50
3.9
50
82
4
220
26
17
25
29
1.98
47637429--47637463
13
2.8
12
87
8
52
0
25
0
74
0.82
47637428--47637511
12
6.8
11
72
20
51
4
22
2
70
1.18
47637932--47637975
15
2.8
17
77
19
51
56
6
0
36
1.26
47642723--47642834
36
3.1
35
76
2
107
36
16
13
33
1.88
47642753--47642818
18
3.7
18
79
0
69
34
18
12
34
1.88
47656091--47656230
6
22.7
6
64
18
56
48
13
17
20
1.81
47656136--47656168
12
2.8
12
100
0
66
48
9
18
24
1.76
47656100--47656206
37
2.9
37
78
4
126
49
12
18
19
1.78
47656179--47656230
19
2.7
19
93
0
86
48
17
15
19
1.82
47656148--47656230
25
3.6
25
73
18
79
46
14
18
20
1.83
47656591--47656655
22
3.0
22
75
8
69
30
21
26
21
1.98
47657044--47657183
27
5.2
27
88
1
174
27
18
17
37
1.93
47657168--47657271
27
3.8
26
68
7
73
30
6
23
39
1.80
47658417--47658464
20
2.4
21
74
22
57
39
18
4
37
1.70
47662451--47662540
45
2.0
45
100
0
180
24
11
6
57
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47667127--47667589
27
17.1
27
82
1
135
35
20
7
36
1.82
47667141--47667403
54
4.9
54
88
0
319
30
22
7
40
1.81
47667166--47667403
81
2.9
81
85
1
325
29
21
7
41
1.80
47667382--47667573
54
3.6
54
79
6
201
40
21
7
30
1.80
47667382--47667573
81
2.4
81
80
5
219
40
21
7
30
1.80
47667382--47667604
81
2.8
82
79
7
217
39
21
8
30
1.83
47667423--47667604
54
3.4
54
82
5
183
40
21
8
28
1.83
47667593--47667753
27
6.0
27
87
2
216
34
17
22
25
1.96
47667593--47667753
81
2.0
81
91
2
261
34
17
22
25
1.96
47667957--47668023
25
2.7
25
88
2
100
29
26
20
22
1.99
47685945--47686004
30
2.0
30
90
0
93
30
25
5
40
1.77
47692172--47692283
42
2.7
42
84
2
145
32
25
14
27
1.95
47699814--47700076
40
6.6
40
87
3
316
26
28
20
24
1.99
47707765--47708027
40
6.6
40
87
3
316
26
28
20
24
1.99
47720542--47720664
56
2.2
57
82
10
146
27
16
24
31
1.96
47723872--47723986
29
4.0
29
85
6
146
27
29
15
26
1.96
47723863--47723973
58
1.9
58
88
1
170
27
30
16
26
1.96
47724197--47724232
8
4.5
8
89
0
54
11
25
19
44
1.83
47724205--47724239
16
2.2
16
89
0
52
11
22
17
48
1.79
47725313--47725345
16
2.1
16
100
0
66
18
6
27
48
1.71
47729561--47729621
30
2.0
30
83
0
77
31
22
8
37
1.84
47730059--47730093
11
3.2
11
95
0
61
8
20
5
65
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47734525--47734590
23
2.8
23
81
6
80
51
0
4
43
1.22
47734632--47734676
17
2.8
15
81
15
54
44
0
4
51
1.21
47734642--47734676
17
2.2
17
90
10
56
48
0
0
51
1.00
47736838--47736874
15
2.5
15
91
4
58
40
16
18
24
1.90
47736846--47736877
15
2.1
15
100
0
64
31
12
28
28
1.93
47755729--47755759
16
1.9
16
100
0
62
19
29
32
19
1.96
47759747--47759852
44
2.4
44
81
4
108
30
13
23
33
1.93
47771961--47772178
40
5.5
40
90
2
316
25
27
22
24
2.00
47781996--47782112
46
2.5
45
84
12
132
21
20
28
29
1.98
47785472--47785687
55
4.0
54
80
6
258
34
16
25
23
1.95
47785479--47785681
108
1.9
110
88
4
313
33
17
25
24
1.96
47785800--47785844
23
1.9
24
86
4
65
42
8
24
24
1.83
47793616--47793712
40
2.4
40
86
10
128
28
28
16
25
1.97
47803579--47803656
33
2.4
33
82
6
95
23
23
19
34
1.96
47808704--47808732
6
5.0
6
95
4
51
48
0
0
51
1.00
47808704--47808741
18
2.1
18
85
9
51
47
2
0
50
1.15
47809020--47809048
6
5.0
6
95
4
51
48
0
0
51
1.00
47809132--47809182
25
2.0
26
85
11
70
35
1
9
52
1.46
47809929--47809962
17
2.0
17
88
0
50
29
0
0
70
0.87
47819558--47819791
50
4.8
50
95
1
332
25
18
30
25
1.98
47819558--47819791
98
2.4
98
88
2
328
25
18
30
25
1.98
47820410--47820552
70
2.0
70
97
0
268
38
18
17
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47831633--47831808
46
3.8
46
76
12
198
22
21
28
28
1.99
47835010--47835041
16
2.0
16
93
0
55
40
3
0
56
1.15
47837653--47837792
35
4.0
35
79
5
140
35
36
1
26
1.66
47837653--47837783
70
1.9
70
85
3
183
35
35
1
27
1.66
47845701--47845778
40
1.9
42
82
10
99
16
28
19
35
1.93
47846866--47846951
44
2.0
44
88
4
129
36
13
17
32
1.89
47851717--47851898
90
2.0
90
98
0
355
48
3
15
31
1.63
47865633--47865766
42
3.1
44
79
8
148
26
16
29
28
1.97
47866063--47866226
38
4.3
38
88
0
220
21
21
23
32
1.98
47866224--47866349
45
2.8
45
89
2
182
22
23
26
26
2.00
47871029--47871136
42
2.6
42
82
5
130
25
25
34
13
1.93
47875153--47875180
5
5.6
5
100
0
56
82
0
0
17
0.68
47876519--47876548
12
2.4
13
94
5
53
63
0
3
33
1.11
47899566--47899884
46
6.7
48
76
13
234
25
19
30
24
1.98
47903175--47903204
13
2.3
13
100
0
60
26
40
26
6
1.81
47907833--47907873
19
2.2
19
100
0
82
46
17
4
31
1.69
47909366--47909430
32
2.0
32
100
0
130
36
3
15
44
1.62
47911032--47911083
25
2.1
25
85
0
68
38
17
7
36
1.78
47914592--47914625
17
2.0
17
100
0
68
23
17
17
41
1.90
47915461--47915493
5
6.8
5
93
6
59
57
0
0
42
0.98
47929066--47929196
49
2.6
50
80
7
151
28
16
28
27
1.97
47932248--47932435
94
2.0
94
91
0
304
24
22
25
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47934856--47934934
39
2.0
39
95
0
140
44
18
3
32
1.68
47936208--47936247
15
2.8
14
85
14
55
47
15
0
37
1.45
47942094--47942133
16
2.4
17
87
4
55
47
0
2
50
1.14
47945957--47946005
25
2.0
25
84
4
64
63
8
0
28
1.23
47945969--47946033
25
2.9
23
82
15
75
66
9
0
24
1.21
47945995--47946033
19
2.0
20
95
5
71
71
10
0
17
1.12
47946035--47946089
11
4.8
12
80
4
51
69
5
1
23
1.19
47960938--47961111
43
4.0
43
81
3
215
31
24
16
27
1.96
47965540--47965628
46
1.9
46
100
0
178
28
29
10
32
1.89
47968868--47969183
49
6.7
49
71
11
196
24
28
19
27
1.98
47968966--47969179
47
4.6
46
72
12
143
24
29
19
26
1.98
47968868--47969183
94
3.4
94
75
10
286
24
28
19
27
1.98
47968868--47969187
140
2.3
141
80
7
353
24
29
19
27
1.98
47973991--47974254
47
5.7
45
73
12
169
23
29
19
26
1.98
47973943--47974254
94
3.3
92
78
11
307
24
28
19
27
1.98
47976835--47976964
43
3.0
43
77
6
156
31
23
17
26
1.97
47978296--47978522
48
4.7
48
80
3
197
27
18
30
22
1.98
47978299--47978617
49
6.6
48
80
6
256
27
18
30
23
1.98
47979813--47979854
22
2.0
22
85
4
59
14
40
26
19
1.89
47982672--47982774
25
4.2
25
77
5
93
41
27
9
21
1.84
47987847--47987902
20
2.8
19
79
15
60
8
26
23
41
1.84
48000763--48001031
46
5.8
45
74
14
235
21
18
29
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48000809--48000977
47
3.6
47
72
10
184
21
17
30
30
1.97
48000759--48001023
93
2.8
93
91
0
440
21
18
29
29
1.97
48006061--48006848
47
16.6
47
91
2
1225
32
8
29
29
1.87
48006068--48006848
96
8.2
96
93
2
1292
32
8
29
29
1.87
48019165--48019485
47
6.7
47
92
3
507
31
9
29
29
1.88
48019451--48019516
31
2.1
31
97
0
123
27
12
34
25
1.91
48019357--48019581
125
1.8
125
90
0
360
30
10
32
27
1.90
48019479--48019583
47
2.2
47
81
0
138
32
9
32
25
1.88
48019402--48019563
78
2.1
78
91
0
261
29
11
33
25
1.91
48019702--48019780
37
2.1
37
84
9
99
22
16
32
27
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345