genome.fa.s6.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  37  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10521700--10521756	26	2.2	26	90	6	89	38	26	24	10	1.88
10521805--10521863	26	2.3	26	81	0	73	47	15	10	27	1.77
10522957--10523017	30	2.0	30	84	6	79	19	18	0	62	1.33
10523970--10524001	12	2.5	13	90	10	57	6	21	0	71	1.07
10526345--10526378	18	1.9	17	88	5	50	44	23	11	20	1.84
10528167--10528232	27	2.5	26	79	18	82	25	13	21	39	1.90
10528331--10528367	18	2.1	19	90	10	60	18	43	27	10	1.83
10534331--10534375	8	5.4	8	82	10	54	37	0	0	62	0.96
10534332--10534375	13	3.4	13	78	12	54	38	0	0	61	0.96
10534313--10534368	18	3.1	18	84	7	60	32	1	1	64	1.14
10534330--10534377	18	2.8	17	84	9	62	37	0	0	62	0.95
10537670--10537703	18	1.9	17	88	5	50	14	5	0	79	0.91
10545857--10545891	2	17.5	2	100	0	70	51	0	48	0	1.00
10549758--10549800	19	2.3	19	84	8	52	51	2	9	37	1.47
10550955--10551013	22	2.7	22	78	2	75	47	3	0	49	1.18
10552474--10552560	17	5.1	18	70	14	69	43	2	0	54	1.13
10552479--10552557	24	3.2	24	71	13	79	41	2	0	55	1.13
10556238--10556285	24	2.0	25	83	4	62	66	4	22	6	1.32
10567386--10567466	4	20.2	4	100	0	162	50	24	0	24	1.49
10569587--10569638	27	1.9	27	84	7	70	36	26	0	36	1.57
10573671--10573710	20	2.0	20	100	0	80	25	0	20	55	1.44
10575405--10575443	16	2.4	17	86	4	53	74	0	2	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10576077--10576119	17	2.5	17	80	3	50	58	2	2	37	1.24
10576584--10576621	19	2.0	19	100	0	76	26	5	21	47	1.71
10577214--10577282	23	2.9	24	84	14	90	36	0	2	60	1.11
10577973--10578034	29	2.1	31	87	6	92	35	3	6	54	1.42
10580339--10580492	46	3.4	45	83	4	184	33	22	20	24	1.97
10591230--10591314	42	2.0	44	81	11	104	10	12	8	68	1.40
10592030--10592087	29	2.0	29	100	0	116	37	17	10	34	1.84
10594108--10594154	24	1.9	24	82	4	58	46	0	0	53	1.00
10595545--10595602	23	2.4	24	85	11	82	62	6	3	27	1.37
10595558--10595601	23	1.9	23	100	0	88	61	4	4	29	1.36
10595903--10595949	21	2.2	21	85	11	60	42	2	0	55	1.12
10605002--10605038	2	18.5	2	100	0	74	51	0	0	48	1.00
10614806--10614848	2	21.5	2	100	0	86	48	0	0	51	1.00
10617411--10617484	37	2.0	37	92	2	123	52	12	6	28	1.64
10622784--10622846	18	3.5	18	77	0	72	36	14	12	36	1.84
10622784--10622863	18	4.4	19	75	9	62	35	15	13	36	1.86
10622782--10622863	36	2.3	36	80	4	94	34	15	13	36	1.87
10623021--10623045	6	4.2	6	100	0	50	52	16	16	16	1.76
10623036--10623127	44	2.1	44	84	8	116	36	22	19	20	1.95
10624511--10624561	25	2.0	25	82	14	61	43	11	3	41	1.60
10624939--10624986	20	2.4	20	74	22	55	39	18	4	37	1.70
10630642--10630756	43	2.7	42	80	7	126	26	18	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10630642--10630804	85	1.9	85	84	9	217	27	17	26	28	1.98
10631564--10631588	13	1.9	13	100	0	50	16	32	44	8	1.76
10631958--10631986	15	2.0	15	93	6	51	55	6	0	37	1.27
10634274--10634312	8	4.6	8	81	12	51	41	0	0	58	0.98
10640803--10641031	115	2.0	115	95	0	413	37	14	14	33	1.86
10642613--10642670	29	2.0	29	100	0	116	37	10	13	37	1.79
10649271--10649301	12	2.6	12	94	0	53	0	25	0	74	0.82
10649381--10649411	16	1.9	16	93	0	53	54	3	0	41	1.16
10653062--10653555	247	2.0	247	100	0	988	30	19	15	34	1.93
10653669--10653722	26	2.1	26	100	0	108	40	3	14	40	1.64
10666335--10666510	46	3.8	46	78	15	191	21	19	29	29	1.98
10666332--10666502	93	1.8	93	92	0	288	21	20	29	28	1.98
10678262--10678333	18	4.0	18	85	0	99	34	15	22	27	1.94
10683978--10684098	47	2.7	46	70	13	108	60	4	9	25	1.47
10703601--10703676	38	2.0	39	82	5	93	34	25	6	34	1.82
10706199--10706227	2	14.5	2	100	0	58	48	0	0	51	1.00
10707010--10707047	20	1.9	20	88	0	58	44	10	15	28	1.80
10708343--10708405	29	2.2	29	97	0	117	28	11	15	44	1.81
10708597--10708648	15	3.2	15	73	19	50	44	0	1	53	1.11
10711715--10711776	21	2.9	19	76	19	54	66	0	4	29	1.12
10711801--10711853	21	2.5	21	81	6	54	69	1	1	26	1.09
10711824--10711853	14	2.1	14	93	0	51	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10712340--10712385	18	2.5	20	79	13	53	65	0	6	28	1.17
10714036--10714996	206	4.7	206	89	3	1447	29	22	17	30	1.97
10720312--10720354	21	2.0	21	100	0	86	48	23	4	23	1.69
10725110--10725216	26	4.2	26	86	5	155	37	23	5	33	1.78
10725110--10725216	52	2.1	51	92	1	178	37	23	5	33	1.78
10732204--10732311	26	4.2	26	91	0	180	37	24	6	32	1.81
10737055--10737112	5	11.2	5	74	7	53	67	0	3	29	1.07
10737052--10737113	21	2.9	20	77	18	63	67	0	3	29	1.06
10737602--10737641	14	2.9	14	88	7	55	67	0	2	30	1.04
10737664--10737709	18	2.5	20	79	13	53	65	0	6	28	1.17
10756389--10756534	56	2.6	55	85	4	193	32	3	17	46	1.64
10756670--10756718	24	2.0	24	100	0	98	32	4	18	44	1.68
10756673--10756729	24	2.5	22	88	8	80	31	1	17	49	1.57
10763151--10763198	16	3.0	16	84	6	62	60	14	6	18	1.55
10769717--10769776	28	2.1	29	81	12	70	65	5	0	30	1.14
10775260--10775303	17	2.5	18	81	7	63	25	0	2	72	0.96
10775245--10775287	21	2.0	22	86	9	61	27	2	0	69	1.00
10776118--10776153	16	2.1	18	90	10	58	50	0	0	50	1.00
10776774--10776811	19	2.0	20	85	10	53	44	2	0	52	1.14
10777515--10777547	16	2.0	17	94	5	59	63	6	6	24	1.40
10780359--10780389	4	8.0	4	92	7	55	22	0	0	77	0.77
10781170--10781213	16	2.8	16	76	13	54	52	11	20	15	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10781431--10781517	28	3.1	28	80	6	95	26	12	32	28	1.93
10781435--10781493	29	2.0	29	87	6	84	23	13	32	30	1.93
10785488--10785566	29	2.8	28	79	7	88	22	15	31	30	1.95
10789519--10789605	28	3.1	28	83	6	113	26	13	32	27	1.94
10792599--10792648	25	2.0	24	92	3	82	14	30	18	38	1.89
10792607--10792664	25	2.3	25	85	11	75	18	29	18	32	1.96
10794461--10794525	23	2.7	24	76	11	62	46	3	15	35	1.62
10794582--10794701	24	4.9	23	75	14	98	58	5	6	30	1.45
10794742--10794785	23	1.9	23	90	9	72	63	0	2	34	1.07
10795067--10795105	16	2.4	16	86	0	51	43	28	5	23	1.75
10795257--10795369	29	3.9	30	91	5	187	19	6	48	25	1.72
10796056--10796562	91	5.7	90	79	9	431	35	18	16	28	1.93
10796046--10796561	90	5.8	89	79	7	425	36	18	16	28	1.93
10796389--10796421	14	2.4	14	94	0	57	63	6	12	18	1.48
10796011--10797015	146	6.2	172	78	13	551	35	18	15	29	1.93
10796499--10797441	72	12.9	72	85	5	1197	33	20	16	30	1.94
10796518--10797521	219	4.5	220	89	4	1373	33	20	15	30	1.94
10796510--10797441	364	2.6	362	94	2	1602	32	20	15	30	1.94
10797622--10797666	13	3.4	13	87	6	72	68	6	11	13	1.37
10797460--10797810	100	3.6	99	84	9	410	37	19	17	25	1.94
10797635--10797810	90	2.0	87	86	5	246	38	20	17	24	1.93
10814601--10814655	25	2.3	23	78	12	58	43	3	16	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10814717--10814784	22	2.9	24	80	8	77	57	5	7	29	1.50
10814804--10814933	25	5.5	24	71	15	92	56	3	4	35	1.35
10814794--10814854	14	4.1	14	78	18	61	60	1	3	34	1.23
10814746--10814847	28	3.6	30	73	12	90	58	4	4	31	1.40
10814796--10814858	25	2.5	27	80	15	80	58	1	3	36	1.23
10815172--10815210	16	2.4	16	86	0	51	43	28	5	23	1.75
10815358--10815515	30	5.3	30	92	0	253	22	6	47	24	1.74
10815452--10815505	18	3.3	18	66	28	57	20	7	50	22	1.73
10820692--10820728	18	2.1	18	89	0	56	35	5	10	48	1.61
10824962--10825015	15	3.3	15	74	18	54	44	0	1	53	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345