Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  295  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100089949--100090035
41
2.1
41
93
0
147
33
16
26
24
1.95
100089990--100090122
55
2.4
54
75
1
131
37
18
22
21
1.94
100090083--100090202
53
2.3
53
80
2
134
38
18
25
17
1.92
100090787--100090859
35
2.1
35
97
0
137
17
21
21
38
1.93
100097896--100097970
34
2.2
33
80
4
87
64
4
5
26
1.33
100099753--100099852
49
2.0
49
96
0
182
33
3
27
37
1.72
100101449--100101506
8
6.9
8
74
18
55
60
5
1
32
1.29
100103981--100104048
34
2.0
34
94
0
118
41
26
11
20
1.87
100106140--100106180
20
2.1
20
90
4
66
7
24
0
68
1.15
100108968--100109017
3
16.7
3
80
15
59
70
0
30
0
0.88
100108968--100109017
17
2.9
16
82
11
64
70
0
30
0
0.88
100109527--100109607
16
4.9
16
73
7
65
70
3
6
19
1.24
100109537--100109606
32
2.2
32
84
5
88
71
4
5
18
1.23
100109641--100110119
145
3.2
150
86
5
656
58
7
6
27
1.49
100109979--100110279
120
2.4
122
87
6
399
57
8
7
25
1.55
100112906--100113045
26
5.1
26
71
21
124
48
12
2
37
1.52
100112920--100113018
18
5.4
18
75
14
96
48
11
3
37
1.54
100112906--100113045
56
2.5
55
94
2
244
48
12
2
37
1.52
100112929--100113029
30
3.5
29
77
20
122
49
9
2
37
1.51
100112920--100113018
35
2.7
38
74
16
100
48
11
3
37
1.54
100117944--100118115
38
4.5
38
91
2
247
18
20
27
33
1.96
100117934--100118115
75
2.4
78
87
5
264
19
19
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100126018--100126152
38
3.5
38
86
2
180
17
20
28
34
1.94
100128113--100128249
42
3.3
40
80
13
149
51
10
4
33
1.57
100128188--100128220
16
2.1
16
100
0
66
63
12
0
24
1.28
100128113--100128249
45
3.3
43
78
11
139
51
10
4
33
1.57
100128212--100128272
25
2.4
26
86
10
90
44
6
6
42
1.56
100130145--100130187
16
2.6
17
81
7
52
46
0
0
53
1.00
100130147--100130193
24
2.0
24
82
0
58
48
0
2
48
1.13
100130313--100130380
32
2.2
31
86
5
100
29
1
2
66
1.15
100130314--100130357
23
2.0
22
86
4
61
34
0
2
63
1.07
100130760--100130827
16
4.2
16
90
7
102
27
0
33
38
1.57
100130760--100130827
32
2.1
32
94
0
118
27
0
33
38
1.57
100130957--100131266
157
2.0
157
94
0
539
44
3
4
47
1.41
100131020--100131269
76
3.1
81
63
24
186
46
4
3
45
1.39
100132145--100132174
13
2.3
13
100
0
60
60
13
6
20
1.55
100136504--100136543
18
2.1
18
90
9
62
5
27
0
67
1.11
100138670--100138725
26
2.2
26
96
0
103
30
7
25
37
1.82
100142982--100143037
24
2.3
24
87
0
85
28
28
12
30
1.93
100149207--100149270
5
12.8
5
88
6
78
85
0
12
1
0.66
100149217--100149285
6
12.0
6
79
13
74
84
0
14
1
0.70
100149212--100149283
23
3.1
22
86
7
90
84
0
12
2
0.72
100159981--100160242
48
5.5
50
73
14
182
24
28
17
29
1.97
100160075--100160245
94
1.8
94
83
5
231
25
26
18
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100175344--100175521
27
6.6
27
84
3
205
29
28
15
26
1.96
100175365--100175520
82
1.9
81
88
3
233
29
28
15
26
1.96
100183526--100183703
27
6.6
27
84
3
205
29
28
15
26
1.96
100183547--100183702
82
1.9
81
88
3
233
29
28
15
26
1.96
100196369--100196399
16
1.9
16
100
0
62
58
0
35
6
1.24
100201536--100201958
48
8.9
48
75
5
367
28
18
25
27
1.98
100201536--100201958
144
3.0
144
85
3
527
28
18
25
27
1.98
100203744--100203904
41
4.0
40
74
15
150
27
27
22
22
1.99
100212173--100212340
41
4.1
41
76
7
135
26
28
22
22
1.99
100212190--100212331
41
3.5
41
82
7
148
26
28
22
23
1.99
100214677--100214719
22
2.0
22
100
0
86
41
18
11
27
1.85
100220664--100220692
7
4.1
7
100
0
58
55
0
0
44
0.99
100232631--100232671
21
2.0
20
85
4
55
34
0
19
46
1.50
100233220--100233383
43
3.8
43
83
4
163
29
16
23
29
1.96
100239420--100239522
42
2.4
44
84
9
133
31
24
19
25
1.98
100239396--100239557
43
3.8
42
76
11
114
30
25
19
24
1.98
100239969--100240001
17
2.0
16
94
5
57
63
18
0
18
1.31
100239967--100240000
8
4.1
8
88
3
50
61
20
0
17
1.34
100240837--100241131
144
2.0
147
80
7
332
30
1
15
52
1.50
100241904--100241965
31
2.0
31
100
0
124
35
12
16
35
1.87
100242682--100242757
22
3.7
21
76
15
68
40
17
6
35
1.75
100242718--100242808
19
4.9
19
88
8
143
36
15
10
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100242718--100242803
35
2.4
36
92
5
138
36
15
11
37
1.83
100242732--100242787
17
3.5
15
88
9
60
35
16
10
37
1.83
100242923--100242962
21
2.0
20
85
5
53
10
2
15
72
1.21
100243155--100243354
45
4.5
45
86
3
251
25
29
14
31
1.94
100243169--100243334
89
1.9
89
89
2
262
27
30
13
28
1.94
100243306--100243533
88
2.5
88
82
6
246
27
25
17
29
1.97
100243605--100244076
87
5.4
87
89
1
694
32
25
14
27
1.95
100243897--100244031
41
3.2
41
64
24
98
34
21
14
28
1.93
100244041--100244208
44
3.8
44
93
0
273
26
29
15
28
1.96
100245180--100245221
12
3.5
11
87
12
57
0
14
0
85
0.59
100245178--100245231
13
4.2
13
79
9
58
0
14
0
85
0.61
100245178--100245228
19
2.7
20
91
8
81
0
15
0
84
0.63
100251258--100251319
31
2.0
31
96
0
115
35
12
17
33
1.88
100252038--100252113
22
3.7
21
76
15
68
40
17
6
35
1.75
100252074--100252164
35
2.5
37
89
8
141
36
16
10
36
1.84
100252088--100252143
17
3.5
15
88
9
60
35
16
10
37
1.83
100252074--100252164
19
4.9
19
89
8
152
36
16
10
36
1.84
100252283--100252321
21
1.9
20
84
5
51
10
2
15
71
1.23
100255444--100255599
42
3.7
42
74
13
133
25
16
23
34
1.95
100265807--100266175
204
1.8
204
93
0
639
34
19
8
37
1.83
100267537--100267577
20
2.0
22
85
9
59
78
7
4
9
1.10
100271622--100271673
18
2.9
18
76
15
54
75
15
0
9
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100271628--100271684
11
4.9
11
76
19
53
78
12
0
8
0.95
100273346--100273387
3
14.0
3
80
9
50
64
4
2
28
1.26
100273346--100273387
15
2.8
15
86
13
68
64
4
2
28
1.26
100278308--100278341
17
2.0
17
100
0
68
5
17
5
70
1.28
100279031--100279120
3
32.7
3
73
16
54
68
3
1
26
1.11
100279031--100279115
35
2.5
35
81
9
95
68
3
1
27
1.13
100279051--100279115
10
6.5
10
74
13
53
70
3
0
26
1.01
100295369--100295520
25
6.2
24
73
10
94
36
21
25
16
1.94
100300373--100300600
62
3.7
62
75
4
192
28
24
26
20
1.99
100302767--100302877
27
4.1
26
86
7
141
17
25
21
36
1.95
100302767--100302877
54
2.1
54
87
3
161
17
25
21
36
1.95
100308819--100309099
62
4.5
61
78
4
215
26
24
27
21
1.99
100311527--100311561
13
2.8
12
87
8
52
28
0
0
71
0.86
100311901--100311958
27
2.1
28
81
9
66
22
8
0
68
1.16
100315870--100315912
17
2.5
17
81
11
52
16
4
6
72
1.24
100316006--100316347
41
8.4
41
85
2
393
32
21
22
23
1.98
100316387--100316456
36
1.9
36
85
0
95
48
31
1
18
1.57
100316894--100316952
15
4.0
15
74
12
52
16
1
42
38
1.59
100317064--100317107
16
2.6
17
82
7
54
52
2
2
43
1.26
100317728--100317793
29
2.2
29
82
10
80
30
19
0
50
1.48
100329656--100329724
27
2.6
27
88
0
93
33
24
15
26
1.95
100330623--100330680
22
2.8
21
78
5
64
22
24
20
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100340917--100340951
18
1.9
18
94
0
61
14
34
28
22
1.93
100342746--100342828
43
1.9
43
95
0
148
28
31
19
20
1.97
100342751--100342877
43
3.0
43
82
2
130
30
29
17
22
1.97
100343196--100343234
5
7.6
5
97
2
69
17
0
2
79
0.84
100350718--100350777
15
4.0
15
84
0
75
55
13
18
13
1.70
100354628--100354743
43
2.7
42
81
1
133
30
25
18
25
1.98
100358732--100358798
6
11.3
6
79
9
75
79
2
2
14
0.98
100371464--100371512
23
2.2
23
85
3
64
32
18
28
20
1.96
100373022--100373075
16
3.4
16
82
5
65
37
3
29
29
1.75
100373230--100373279
26
2.0
26
88
4
75
42
0
4
54
1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345