genome.fa.s6.2.7.7.80.10.50.1000.275.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  275  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93682774--93682885	54	2.1	54	89	3	172	16	24	23	36	1.94
93689119--93689186	24	2.8	24	91	4	102	36	5	38	19	1.76
93689943--93689972	16	1.9	15	93	6	51	53	23	20	3	1.60
93690390--93690478	27	3.2	28	75	12	85	17	23	22	35	1.95
93690390--93690502	27	4.2	26	77	8	82	17	22	21	38	1.93
93691778--93691811	15	2.3	15	89	0	50	20	0	0	79	0.73
93694264--93694473	43	4.9	43	97	0	384	31	33	24	10	1.88
93697939--93698252	27	11.6	27	83	2	337	39	20	10	29	1.85
93697939--93698254	54	5.9	54	87	3	415	39	20	10	29	1.85
93698156--93698406	81	3.1	81	82	6	303	36	19	18	25	1.94
93698183--93698405	27	8.3	27	86	2	295	35	19	19	24	1.95
93698762--93698811	22	2.3	22	82	0	64	22	28	20	30	1.98
93699199--93699323	6	20.3	6	75	14	103	19	20	13	47	1.82
93699189--93699287	31	3.2	31	94	0	162	19	19	15	46	1.84
93699199--93699323	37	3.6	36	87	8	152	19	20	13	47	1.82
93699189--93699323	31	4.2	31	84	10	153	19	20	13	47	1.82
93700811--93701081	27	10.0	27	83	0	317	39	20	8	32	1.82
93700820--93701081	81	3.2	81	86	0	389	40	20	8	31	1.81
93700810--93701108	81	3.7	82	83	3	383	38	20	8	32	1.83
93700813--93701079	54	4.9	54	91	0	417	39	20	8	31	1.82
93701037--93701339	81	3.8	80	84	3	333	34	19	19	26	1.96
93701091--93701340	27	9.3	27	89	0	347	34	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93701697--93701746	22	2.3	22	85	0	73	24	28	18	30	1.97
93702134--93702215	6	13.3	6	75	10	58	19	19	14	46	1.84
93702111--93702213	31	3.3	30	86	4	125	19	17	13	49	1.79
93706013--93706120	23	4.5	22	77	8	90	32	21	22	24	1.98
93710714--93710775	26	2.4	26	94	0	115	24	22	24	29	1.99
93710816--93710852	19	1.9	19	100	0	74	35	21	10	32	1.88
93717249--93717350	31	3.1	31	79	15	89	22	21	16	39	1.92
93717235--93717333	38	2.6	38	92	6	166	24	19	15	41	1.89
93717572--93717644	26	2.8	26	93	4	121	23	23	26	27	2.00
93717702--93717787	5	17.6	5	70	17	65	36	19	8	36	1.82
93717694--93717758	20	3.2	20	91	0	112	33	18	10	36	1.86
93717702--93717787	9	8.8	10	73	14	65	36	19	8	36	1.82
93717722--93717787	29	2.3	29	92	5	107	36	21	7	34	1.82
93725599--93725730	35	3.6	36	80	11	153	31	11	24	33	1.90
93729392--93729537	40	3.7	40	88	3	206	21	23	25	30	1.99
93737407--93737521	39	2.9	40	92	2	196	22	19	26	32	1.97
93739108--93739259	43	3.5	43	79	8	157	30	25	19	24	1.98
93742788--93742977	50	3.8	50	75	6	177	30	25	17	27	1.97
93752874--93752956	42	2.0	43	85	7	116	30	27	20	21	1.98
93757488--93757567	37	2.2	37	83	0	97	26	31	17	25	1.97
93757686--93758340	47	13.9	47	92	3	1018	28	30	9	32	1.88
93759456--93759481	1	26.0	1	100	0	52	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93765183--93765213	15	2.1	15	93	0	53	22	3	29	45	1.68
93765100--93765276	85	2.1	85	90	8	281	22	3	33	39	1.73
93769932--93770057	46	2.7	46	96	0	225	29	27	22	20	1.98
93769934--93770076	46	3.1	45	88	4	146	28	28	21	20	1.98
93777412--93777633	46	4.8	46	84	9	308	29	28	20	21	1.98
93778055--93778114	30	2.0	30	90	0	93	31	25	6	36	1.82
93783828--93784059	49	4.7	49	86	2	311	25	17	27	29	1.98
93786664--93786777	43	2.7	42	84	2	156	28	17	25	28	1.98
93793054--93793173	43	2.8	42	80	7	152	29	17	24	29	1.97
93802601--93802668	20	3.4	20	82	8	84	5	27	25	41	1.78
93805831--93806144	46	6.7	46	71	14	187	28	20	27	22	1.99
93805831--93806178	138	2.5	137	81	7	366	28	20	27	23	1.99
93811246--93811379	43	2.9	46	82	11	166	20	18	30	30	1.96
93811375--93811419	20	2.1	22	88	12	67	37	4	20	37	1.73
93814989--93815080	27	3.3	28	89	3	123	27	10	28	33	1.90
93815013--93815096	27	3.0	27	85	5	87	29	10	25	34	1.90
93823030--93823127	27	3.5	28	90	2	135	26	13	28	31	1.94
93823058--93823139	27	3.0	27	87	5	94	29	12	25	32	1.92
93827075--93827258	40	4.6	39	85	4	219	24	22	27	25	2.00
93827075--93827258	79	2.3	80	84	6	223	24	22	27	25	2.00
93827127--93827291	79	2.1	79	84	6	210	26	21	27	25	1.99
93832830--93832888	30	1.9	31	86	3	84	47	3	20	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93833140--93833164	8	3.1	8	100	0	50	24	0	0	76	0.80
93841229--93841354	39	3.2	39	87	0	180	24	23	24	27	2.00
93846849--93846911	31	2.0	31	100	0	126	31	6	22	39	1.79
93847412--93847450	21	1.9	20	85	15	53	12	35	28	23	1.91
93850313--93850358	24	1.9	24	86	8	67	54	0	36	8	1.32
93852196--93852366	46	3.7	46	79	9	186	21	27	21	29	1.98
93852183--93852370	94	2.0	91	84	8	245	22	27	19	30	1.98
93852702--93852759	30	1.9	30	89	0	89	27	25	12	34	1.91
93854534--93854612	37	2.1	37	88	0	113	25	30	18	25	1.98
93854731--93854973	47	5.1	49	91	3	363	28	30	9	32	1.88
93854731--93854973	96	2.5	97	88	5	361	28	30	9	32	1.88
93858770--93858869	40	2.5	40	90	0	155	25	26	23	26	2.00
93859182--93859253	29	2.5	29	86	4	92	27	31	13	26	1.94
93859235--93859378	43	3.3	43	100	0	288	27	35	14	22	1.93
93861435--93861767	47	7.1	47	93	2	562	28	30	9	32	1.88
93865912--93866036	59	2.1	59	92	0	214	33	14	20	32	1.92
93868808--93868878	34	2.1	33	84	7	90	26	23	21	28	1.99
93887292--93887464	46	3.7	46	77	13	201	21	20	27	29	1.98
93887289--93887459	93	1.8	93	94	0	306	21	21	28	28	1.98
93898820--93899003	39	4.7	40	75	11	173	26	28	20	24	1.99
93901151--93901220	26	2.8	26	87	8	92	27	22	22	27	1.99
93903693--93903762	6	11.7	6	98	0	131	15	0	14	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93911753--93911792	21	2.0	20	85	5	53	45	20	0	35	1.51
93916227--93916332	40	2.7	40	79	5	108	25	25	25	23	2.00
93926251--93926417	43	3.9	43	77	3	167	32	24	16	26	1.96
93928220--93928259	21	2.0	20	90	5	62	42	22	0	35	1.54
93929101--93929139	12	3.2	12	85	0	51	5	0	12	82	0.83
93931409--93931482	33	2.2	33	78	7	78	40	4	1	54	1.28
93931423--93931494	16	4.4	16	69	20	60	40	2	1	55	1.23
93931670--93931945	148	1.9	147	87	3	376	39	9	5	46	1.58
93932178--93932211	9	3.8	9	88	0	50	26	11	17	44	1.83
93932339--93932377	19	2.1	19	85	9	53	56	5	2	35	1.35
93932560--93932593	15	2.3	15	94	0	59	50	8	0	41	1.34
93932873--93932912	14	2.9	14	82	14	55	0	40	0	60	0.97
93941111--93941145	16	2.2	16	89	0	52	51	0	17	31	1.45
93941320--93941571	117	2.1	120	87	8	376	51	4	1	42	1.30
93944856--93944973	43	2.8	42	79	7	148	31	16	22	29	1.96
93944861--93944995	42	3.2	41	80	4	144	29	14	25	30	1.95
93949494--93949664	43	4.0	43	78	3	157	28	11	23	35	1.90
93953886--93953926	20	2.0	20	100	0	82	41	4	19	34	1.73
93954102--93954162	30	2.0	30	93	0	104	40	16	18	24	1.90
93959680--93959733	27	2.0	27	85	0	72	40	12	7	38	1.72
93961868--93962167	46	6.4	48	76	12	218	23	29	18	28	1.98
93961763--93962162	94	4.2	95	73	15	278	26	29	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93966316--93966443	61	2.1	61	98	0	247	46	25	8	20	1.79
93970422--93970586	43	3.9	42	82	7	201	29	25	16	28	1.97
93974986--93975077	43	2.1	43	85	0	121	21	38	23	16	1.93
93978074--93978125	26	2.0	26	96	0	95	30	15	17	36	1.91
93978564--93978621	29	2.0	29	100	0	116	48	10	13	27	1.75
93987523--93987552	15	2.0	15	93	0	51	26	0	16	56	1.40
93988101--93988222	45	2.7	45	80	0	118	25	15	24	34	1.95
93988159--93988314	45	3.7	42	75	9	129	24	19	28	27	1.99
93989070--93989131	22	3.0	20	81	13	63	30	0	22	46	1.52
93990616--93990675	30	2.0	30	93	0	102	25	3	13	58	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345