genome.fa.s6.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  96  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31601678--31601735	25	2.2	26	85	11	75	34	3	3	58	1.32
31601888--31601969	27	3.3	24	74	14	69	30	10	3	54	1.52
31606050--31606096	23	2.0	23	100	0	94	42	0	17	40	1.49
31607966--31608206	43	5.6	43	94	0	419	12	24	32	30	1.92
31613250--31613289	19	2.1	19	85	0	53	40	15	0	45	1.46
31621051--31621216	85	2.0	85	90	0	260	32	19	5	42	1.74
31622840--31622907	30	2.3	30	94	0	118	39	8	22	29	1.84
31624893--31624930	19	2.0	19	100	0	76	42	0	10	47	1.38
31626762--31626891	64	2.0	65	96	1	244	23	18	17	40	1.91
31628994--31629030	4	9.2	4	100	0	74	75	0	24	0	0.80
31629791--31629900	47	2.4	46	81	7	134	26	16	22	34	1.95
31636249--31636277	4	7.2	4	100	0	58	75	0	24	0	0.80
31637040--31637150	47	2.4	47	83	6	145	26	16	22	35	1.95
31640315--31640460	79	1.8	79	86	5	215	24	21	18	34	1.96
31640712--31640745	17	1.9	17	88	5	50	23	20	11	44	1.84
31645775--31645944	81	2.1	82	98	1	333	20	31	18	30	1.96
31648599--31648628	14	2.1	14	93	0	51	50	3	0	46	1.18
31651361--31651576	112	1.9	112	83	1	281	39	25	6	28	1.81
31653339--31653378	21	1.9	21	89	0	62	60	0	27	12	1.33
31656191--31656278	20	4.4	20	80	8	81	44	4	10	40	1.59
31656292--31656353	20	3.1	21	77	9	58	46	3	8	41	1.49
31656494--31656532	20	2.0	20	89	0	60	46	5	10	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31656567--31656629	20	3.2	20	76	13	58	36	4	12	46	1.63
31656686--31656728	19	2.3	19	83	0	59	39	6	6	46	1.58
31657269--31657335	31	2.2	31	86	2	91	37	0	1	61	1.05
31675780--31676490	354	2.0	352	96	0	1314	36	24	13	24	1.92
31677891--31678052	43	3.8	43	79	11	156	24	16	25	34	1.95
31687674--31687844	46	3.7	45	76	13	170	22	29	19	28	1.98
31687674--31687847	94	1.9	90	85	9	242	22	29	20	27	1.98
31693744--31693932	96	2.0	96	90	0	297	34	14	17	32	1.91
31697094--31697125	13	2.5	13	100	0	64	37	46	15	0	1.46
31705171--31705211	22	1.9	22	85	5	57	48	19	4	26	1.69
31708292--31708368	29	2.6	29	79	4	82	46	15	14	23	1.82
31708486--31708589	52	2.0	52	100	0	208	36	7	13	42	1.73
31711020--31711137	26	4.3	27	74	16	100	48	0	8	42	1.39
31711071--31711142	31	2.4	31	88	2	101	50	0	6	43	1.29
31721464--31721507	21	2.1	21	95	4	81	54	4	6	34	1.47
31721478--31721603	31	4.1	30	69	18	80	56	7	1	34	1.38
31721567--31721738	25	7.1	25	72	16	82	54	4	5	35	1.44
31721478--31721518	11	3.9	11	78	12	50	53	7	2	36	1.42
31721438--31721728	26	12.2	25	69	22	159	55	5	4	34	1.43
31721438--31721738	51	6.3	49	71	17	180	55	5	4	34	1.42
31721666--31721780	11	10.8	10	68	24	58	59	3	1	35	1.25
31721687--31721767	39	2.2	35	82	10	90	59	3	2	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31721437--31721739	144	2.1	137	79	14	314	55	5	4	34	1.42
31721721--31721771	15	3.5	15	81	2	59	62	1	0	35	1.06
31723535--31723588	21	2.6	21	78	0	63	25	31	12	29	1.93
31723629--31723869	89	2.7	88	80	8	276	36	22	15	25	1.94
31723801--31723935	71	1.9	71	96	0	252	31	20	17	30	1.95
31736073--31736116	21	2.1	21	91	4	72	52	6	6	34	1.55
31736114--31736242	21	6.3	20	73	19	63	59	5	0	34	1.26
31736051--31736270	46	4.9	46	74	16	153	57	5	2	34	1.34
31736132--31736253	21	5.9	21	71	16	78	60	5	0	32	1.26
31736205--31736239	17	2.1	17	88	0	52	65	0	0	34	0.93
31749346--31749406	30	2.0	30	100	0	122	55	3	0	40	1.16
31751813--31751898	44	2.0	44	88	0	127	25	20	26	26	1.99
31751813--31751911	44	2.2	44	85	0	117	26	22	25	26	2.00
31752700--31754492	895	2.0	895	98	0	3487	28	27	17	26	1.98
31758304--31758377	23	3.4	24	62	34	58	33	22	14	28	1.94
31762565--31762646	40	2.0	40	97	0	155	53	9	1	35	1.42
31778363--31778423	30	2.0	30	83	0	77	31	22	8	37	1.84
31783340--31783374	18	1.9	18	100	0	70	45	17	20	17	1.85
31783531--31783581	22	2.3	22	89	0	75	31	21	23	23	1.98
31783540--31783587	22	2.2	22	84	0	60	27	22	27	22	1.99
31783730--31783906	27	6.6	27	80	6	189	41	19	12	25	1.88
31783719--31783906	81	2.3	81	85	1	243	40	19	14	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31783721--31783906	54	3.4	54	88	0	264	40	19	14	25	1.90
31795135--31795193	29	2.0	30	86	3	84	30	25	6	37	1.82
31797251--31797341	40	2.3	40	86	0	119	25	27	23	24	2.00
31801982--31802158	27	6.6	26	83	5	210	40	18	13	27	1.88
31801982--31802158	54	3.3	54	84	3	239	40	18	13	27	1.88
31802003--31802158	81	1.9	81	92	0	258	39	17	14	28	1.89
31801982--31802168	81	2.3	81	85	1	250	40	17	14	27	1.89
31806892--31806925	16	2.2	16	89	5	52	50	20	0	29	1.49
31815455--31815481	13	2.1	13	100	0	54	14	33	37	14	1.88
31818502--31818594	9	10.3	9	86	0	123	35	24	8	31	1.86
31818502--31818594	27	3.4	27	90	0	150	35	24	8	31	1.86
31819729--31819762	15	2.4	14	90	5	50	67	5	20	5	1.33
31827865--31827915	25	2.0	25	84	0	66	41	7	11	39	1.71
31841675--31841713	21	1.9	20	94	5	69	46	48	0	5	1.24
31842328--31842361	8	4.1	8	85	7	50	73	0	2	23	0.97
31846594--31846647	24	2.2	25	80	9	67	64	3	0	31	1.11
31846833--31846911	31	2.5	31	83	0	95	48	8	16	26	1.75
31855737--31855789	21	2.5	21	90	0	88	26	7	35	30	1.84
31856006--31856088	18	4.8	18	68	24	70	49	3	2	44	1.32
31857619--31857705	40	2.1	41	83	6	106	42	4	10	42	1.59
31857783--31857866	40	2.1	40	82	6	98	29	2	13	54	1.51
31860626--31860692	33	2.0	33	100	0	134	29	7	17	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31860722--31860771	4	12.5	4	100	0	100	26	0	24	50	1.50
31868074--31868163	45	2.0	45	100	0	180	53	6	2	37	1.40
31882046--31882120	13	5.8	13	76	9	57	13	8	2	76	1.12
31882087--31882120	9	3.8	9	85	14	52	20	0	2	76	0.92
31882087--31882129	14	3.2	13	84	15	52	23	0	2	74	0.93
31882176--31882254	30	2.6	30	75	11	72	37	1	1	59	1.14
31882192--31882277	39	2.0	43	87	12	126	40	0	1	58	1.06
31882231--31882306	31	2.7	27	80	15	82	39	0	2	57	1.12
31882290--31882322	14	2.3	15	89	5	50	45	0	0	54	0.99
31882788--31882842	12	4.0	13	75	25	51	50	1	0	47	1.11
31882838--31882874	13	3.0	13	84	7	51	62	0	0	37	0.96
31882930--31883012	10	6.9	13	71	28	53	60	6	0	33	1.21
31882909--31883063	24	6.2	24	71	18	104	56	5	1	37	1.30
31882938--31882978	13	3.3	13	76	13	50	63	4	0	31	1.15
31883070--31883117	21	2.3	21	82	10	64	52	0	0	47	1.00
31883078--31883116	20	2.0	21	90	10	64	56	0	0	43	0.99
31882812--31883141	140	2.4	139	75	13	324	54	3	1	39	1.30
31883093--31883193	33	3.0	34	85	8	118	56	1	1	39	1.22
31883127--31883205	20	4.1	20	66	25	53	58	1	1	39	1.14
31883159--31883205	22	2.1	23	88	4	69	57	2	0	40	1.11
31883332--31883399	21	3.2	22	79	10	63	61	1	1	35	1.14
31883340--31883399	21	2.9	21	85	7	70	61	1	1	35	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31883364--31883427	31	2.0	32	90	3	103	62	1	0	35	1.05
31883498--31883537	17	2.4	17	87	8	55	82	5	7	5	0.94
31883696--31883724	14	2.0	15	93	6	51	55	0	0	44	0.99
31883768--31883825	14	3.7	15	75	11	55	55	0	1	43	1.10
31883768--31883807	17	2.5	17	81	18	50	55	0	2	42	1.13
31883808--31883917	58	1.9	56	80	10	125	58	2	1	37	1.23
31884744--31884802	28	2.1	29	96	3	111	6	32	3	57	1.41
31885557--31885821	131	2.0	133	97	1	498	23	12	16	46	1.82
31888193--31888281	44	2.0	46	89	8	139	35	24	5	33	1.79
31888267--31888336	16	4.4	16	87	0	95	32	27	1	38	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345