genome.fa.s6.2.7.7.80.10.50.1000.311.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  311  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105263010--105263115	52	2.0	52	94	3	187	49	16	11	23	1.77
105268620--105268678	22	2.6	23	73	10	59	23	16	28	30	1.97
105269707--105269826	56	2.1	56	98	0	231	45	9	23	22	1.81
105270952--105271135	40	4.6	41	79	10	195	25	22	26	25	2.00
105270952--105271135	79	2.3	80	81	11	202	25	22	26	25	2.00
105271005--105271168	79	2.1	79	82	10	194	27	21	25	25	1.99
105276502--105276526	9	2.8	9	100	0	50	44	0	0	56	0.99
105277786--105277826	21	1.9	22	85	5	57	73	0	7	19	1.07
105280437--105280543	52	2.1	52	100	0	214	41	17	12	28	1.86
105284859--105284925	30	2.3	30	94	2	118	53	13	2	29	1.54
105284911--105284938	5	5.6	5	100	0	56	60	0	0	39	0.97
105286288--105286352	26	2.5	26	82	5	78	29	10	12	47	1.75
105287107--105287148	20	2.1	20	100	0	84	40	21	14	23	1.90
105288274--105288300	14	1.9	14	100	0	54	37	0	18	44	1.50
105288597--105288640	22	2.0	22	86	0	61	52	0	0	47	1.00
105288660--105288701	13	2.9	14	80	13	50	54	0	0	45	0.99
105288664--105288700	16	2.3	16	86	13	58	59	0	0	40	0.97
105288733--105288784	15	3.2	15	73	19	50	53	1	0	44	1.11
105290746--105290790	23	2.0	23	81	0	54	40	11	6	42	1.67
105300996--105301025	7	4.1	7	95	4	51	40	0	0	60	0.97
105304018--105304108	47	1.9	48	84	10	125	52	0	12	35	1.39
105306569--105306642	30	2.5	30	95	0	130	35	40	16	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105306571--105306642	15	4.9	14	75	21	67	34	41	15	8	1.77
105306569--105306665	30	3.2	28	81	11	104	31	41	17	9	1.81
105306722--105306764	18	2.4	18	88	0	59	18	27	6	46	1.75
105310948--105311696	126	6.0	126	92	0	1248	26	20	17	35	1.95
105311706--105311745	19	2.1	19	85	0	53	45	20	2	32	1.64
105311818--105311876	19	3.1	19	82	4	66	44	18	3	33	1.67
105311947--105312004	7	8.3	7	80	14	66	53	32	0	13	1.40
105311946--105312004	21	2.8	21	92	0	100	52	32	0	15	1.43
105312232--105312277	21	2.1	22	84	11	60	65	0	4	30	1.12
105315082--105315210	50	2.5	51	88	2	197	34	15	23	26	1.94
105315186--105315365	31	5.8	31	86	0	243	28	18	24	28	1.98
105315385--105315509	47	2.7	48	83	8	159	33	15	20	30	1.94
105315477--105315559	42	2.0	43	87	2	123	37	14	25	22	1.92
105319632--105319666	17	2.1	17	94	0	61	28	8	17	45	1.77
105324846--105324887	3	14.0	3	100	0	84	0	33	0	66	0.92
105325943--105325974	8	4.0	8	100	0	64	50	0	0	50	1.00
105325936--105325985	24	2.2	22	82	7	55	50	0	2	48	1.12
105325928--105325978	16	3.5	15	80	15	63	45	0	0	54	0.99
105327308--105327370	30	2.1	30	96	0	117	58	11	3	26	1.47
105333261--105333318	30	1.9	30	89	0	89	41	3	24	31	1.71
105333530--105333561	13	2.5	13	94	0	55	31	0	12	56	1.37
105333656--105333897	50	4.7	50	86	4	297	26	24	29	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105333656--105333903	100	2.4	103	88	6	360	25	24	29	20	1.99
105336014--105336127	40	2.9	39	75	7	106	33	23	16	26	1.96
105336368--105336414	24	2.0	23	84	12	60	44	19	0	36	1.51
105337079--105337128	25	1.9	27	84	8	68	6	26	4	64	1.35
105340579--105340613	3	11.7	3	100	0	70	65	0	0	34	0.93
105349038--105349195	84	1.9	82	88	2	235	41	9	6	42	1.63
105351251--105351314	22	2.9	22	81	9	60	68	3	3	25	1.18
105354115--105354213	52	1.9	52	93	0	171	34	19	14	32	1.91
105360028--105360166	3	46.3	3	69	8	68	30	7	4	58	1.44
105360105--105360152	21	2.3	21	96	0	87	29	10	0	60	1.30
105365392--105365487	24	4.0	23	75	16	79	38	22	25	13	1.91
105365443--105365524	26	3.3	26	83	6	107	39	23	21	15	1.92
105366537--105366590	27	2.0	27	82	7	65	37	5	3	53	1.42
105373018--105373074	25	2.2	26	78	9	64	64	3	5	26	1.30
105373998--105374032	12	2.9	12	91	0	52	80	0	5	14	0.89
105375951--105376109	27	5.9	27	78	11	157	35	21	23	20	1.96
105375951--105376109	54	3.0	54	85	2	205	35	21	23	20	1.96
105377734--105377839	26	4.1	26	90	4	169	35	22	7	33	1.83
105378911--105379036	64	2.0	64	83	0	162	31	27	15	24	1.96
105378995--105379152	55	2.8	56	71	14	139	34	22	16	25	1.95
105387523--105387560	11	3.4	11	80	20	51	68	0	0	31	0.90
105387580--105387621	21	2.0	20	86	9	57	35	7	2	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105387660--105387734	30	2.5	30	82	2	96	30	10	9	49	1.69
105387660--105387721	31	2.0	31	87	3	90	30	11	6	51	1.63
105387865--105387919	29	2.0	28	82	13	69	25	3	3	67	1.23
105388141--105388315	60	2.9	59	79	2	179	46	10	19	22	1.81
105389220--105389269	25	2.0	25	96	0	91	38	0	26	36	1.57
105390480--105390564	33	2.6	32	77	5	89	28	20	29	22	1.98
105390615--105390731	45	2.6	45	83	0	153	36	17	23	22	1.94
105390884--105390929	23	2.0	23	84	12	60	45	10	6	36	1.65
105390891--105390940	23	2.2	22	82	10	57	40	14	8	38	1.75
105393643--105393748	46	2.3	46	93	0	176	46	14	22	16	1.83
105393683--105393817	69	2.0	69	93	0	234	45	14	22	17	1.85
105393752--105393852	46	2.2	46	92	0	166	46	12	21	18	1.83
105393643--105393852	115	1.8	115	92	0	357	46	13	22	18	1.83
105397376--105397454	39	2.0	39	90	0	122	26	32	12	27	1.93
105398352--105398458	56	1.9	57	88	1	162	27	18	7	46	1.76
105408882--105408942	31	2.0	31	90	0	95	39	16	19	24	1.92
105408926--105408963	19	2.0	19	100	0	76	42	10	15	31	1.81
105410962--105410986	13	1.9	13	100	0	50	48	24	16	12	1.79
105417505--105417538	5	6.8	5	86	0	50	23	0	55	20	1.43
105418491--105418538	22	2.2	22	88	0	69	35	8	0	56	1.30
105421790--105421856	33	2.0	34	97	2	127	44	19	8	26	1.80
105422294--105422368	29	2.6	29	80	4	80	42	10	17	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105429908--105429940	17	2.0	17	88	5	50	54	0	3	42	1.15
105436645--105436706	30	2.1	30	96	0	115	38	14	6	40	1.72
105437196--105437222	2	13.5	2	100	0	54	48	0	0	51	1.00
105437270--105437297	3	9.3	3	100	0	56	67	0	0	32	0.91
105437656--105437729	11	6.7	11	70	22	57	50	1	0	48	1.09
105437694--105437743	20	2.5	21	87	6	77	58	2	0	40	1.10
105437905--105437949	23	2.0	22	86	4	63	40	0	13	46	1.43
105439231--105439296	33	2.0	33	100	0	132	42	12	9	36	1.74
105448225--105448329	44	2.4	44	82	6	117	31	25	16	26	1.96
105451248--105451344	51	1.9	51	95	0	176	53	1	30	14	1.48
105461920--105461993	22	3.4	22	74	10	53	16	29	20	33	1.94
105463899--105463939	22	1.9	22	85	14	59	39	7	7	46	1.60
105464434--105464528	46	2.0	47	82	8	113	35	21	18	24	1.95
105467272--105467313	20	2.1	20	95	0	75	30	28	14	26	1.95
105467074--105467534	244	1.9	244	93	0	798	27	24	13	34	1.92
105471598--105471700	50	2.0	51	90	1	163	49	10	11	28	1.72
105474927--105475023	19	5.2	17	72	15	59	65	2	4	27	1.21
105474939--105475032	19	5.1	17	74	16	80	64	2	2	30	1.16
105474969--105475032	29	2.2	27	81	13	74	67	1	1	29	1.09
105474945--105475032	10	9.2	10	71	14	60	64	2	2	30	1.18
105475288--105475341	19	2.8	19	78	13	65	35	1	0	62	1.06
105475378--105475405	14	2.0	14	100	0	56	21	7	14	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105475392--105475584	84	2.3	85	80	2	219	34	7	16	41	1.77
105478540--105478595	28	2.0	28	100	0	112	42	10	10	35	1.74
105485279--105485346	31	2.2	31	86	5	93	38	4	5	51	1.46
105485830--105485877	2	24.0	2	100	0	96	0	50	0	50	1.00
105489327--105489352	11	2.4	11	100	0	52	0	7	0	92	0.39
105489399--105489464	24	2.8	24	88	4	71	53	4	16	25	1.62
105491381--105491415	3	11.7	3	93	0	61	65	0	2	31	1.07
105491576--105491636	23	2.7	22	74	2	59	67	4	0	27	1.11
105492333--105492408	31	2.5	31	88	0	98	18	17	17	47	1.83
105494381--105494408	3	9.3	3	100	0	56	32	35	0	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345