Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  188  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63544962--63545003
6
7.0
6
78
10
50
16
16
14
52
1.75
63546265--63546387
23
5.2
23
77
9
97
24
21
17
36
1.94
63546330--63546394
26
2.6
25
75
15
64
29
24
18
27
1.98
63552574--63552745
79
2.2
78
83
7
213
25
22
28
24
1.99
63552521--63552743
40
5.6
39
79
7
207
25
21
27
24
1.99
63552601--63552778
79
2.2
80
82
3
200
25
22
28
23
1.99
63560527--63560701
46
3.8
46
79
7
210
29
28
21
21
1.99
63560532--63560702
93
1.8
93
92
0
288
28
29
21
21
1.98
63564440--63564499
28
2.2
26
77
11
66
28
25
10
36
1.88
63568192--63568270
28
2.8
28
84
0
95
34
11
24
30
1.90
63571272--63571501
116
2.0
116
93
0
397
28
18
10
41
1.84
63578518--63578559
21
2.0
21
95
0
75
19
21
23
35
1.96
63579100--63579182
22
3.7
23
80
12
75
20
10
4
63
1.44
63579108--63579181
11
6.6
11
76
11
62
18
9
5
66
1.40
63579100--63579194
12
8.2
12
71
19
78
21
9
6
63
1.47
63579119--63579195
21
3.3
24
85
8
97
19
9
6
64
1.43
63584873--63585023
42
3.6
42
74
12
132
31
15
25
28
1.95
63584915--63585023
41
2.7
42
79
12
120
30
15
26
27
1.96
63594036--63594281
40
6.2
40
92
1
397
27
26
22
23
2.00
63602180--63602432
39
6.5
39
92
2
368
27
26
22
24
2.00
63608687--63608767
6
13.0
6
73
17
67
49
16
16
18
1.80
63608660--63608767
31
3.5
31
91
3
146
48
14
17
19
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63608699--63608756
19
3.4
19
65
30
58
46
17
17
18
1.84
63609175--63609367
27
7.2
27
82
4
221
25
20
18
35
1.95
63609174--63609359
53
3.5
54
83
1
223
25
20
19
34
1.96
63609216--63609371
80
1.9
81
92
3
262
25
17
19
36
1.94
63609352--63609609
27
9.6
27
80
7
267
30
9
20
39
1.84
63609352--63609609
81
3.2
79
84
6
333
30
9
20
39
1.84
63611776--63611886
58
1.9
57
87
1
159
27
16
30
26
1.96
63611763--63611877
29
4.0
29
84
6
137
27
15
29
26
1.96
63624388--63624442
27
2.0
27
89
0
83
34
20
16
29
1.94
63624427--63624553
27
4.7
27
80
3
130
40
22
7
29
1.82
63624401--63624553
54
2.8
52
78
11
146
39
21
9
29
1.85
63624503--63624616
61
1.9
60
83
5
149
38
21
8
30
1.84
63624594--63624754
55
3.0
54
82
1
196
40
16
11
31
1.84
63624564--63624756
27
7.1
27
82
5
194
41
16
10
31
1.82
63625195--63625259
22
3.0
22
77
8
69
21
24
21
32
1.98
63625466--63625515
22
2.3
22
85
0
64
12
20
28
40
1.87
63641394--63641538
27
5.3
27
78
7
132
37
20
13
27
1.91
63641465--63641563
27
3.7
27
80
6
76
40
20
17
22
1.91
63641409--63641559
81
1.9
81
83
5
198
39
17
15
27
1.91
63641409--63641580
81
2.1
81
81
4
195
38
18
15
27
1.91
63643977--63644155
85
2.1
85
98
0
349
37
8
27
26
1.85
63646353--63646862
47
10.6
47
89
4
752
33
7
29
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63646353--63646862
96
5.3
96
94
2
839
33
7
29
29
1.85
63648289--63648754
40
11.6
40
92
0
734
22
21
29
27
1.99
63648936--63648987
25
2.1
25
85
7
70
28
7
32
30
1.85
63650451--63650629
85
2.1
85
98
0
349
37
8
27
26
1.85
63652822--63653327
47
10.6
47
92
2
814
33
8
29
28
1.86
63652822--63653327
96
5.3
96
94
1
858
33
8
29
28
1.86
63652938--63653013
22
3.3
22
64
10
62
32
10
27
28
1.90
63652822--63653327
143
3.5
142
93
2
854
33
8
29
28
1.86
63659047--63659144
28
3.5
28
86
5
135
29
30
19
20
1.97
63659945--63660068
21
5.9
21
84
7
162
42
16
26
14
1.86
63659945--63660068
63
2.0
63
87
6
180
42
16
26
14
1.86
63664003--63664043
21
1.9
22
85
5
57
63
14
7
14
1.50
63676911--63677091
40
4.6
40
87
2
258
26
25
22
24
2.00
63681253--63681279
13
2.1
13
100
0
54
29
7
22
40
1.81
63688871--63688957
43
2.0
42
91
2
138
48
11
32
8
1.68
63698462--63698510
20
2.5
20
89
0
71
16
34
30
18
1.93
63700017--63700056
15
2.7
15
88
11
57
57
15
17
10
1.64
63705605--63705660
29
1.9
29
82
7
69
16
25
23
35
1.94
63710159--63710241
34
2.5
33
79
14
98
30
22
20
26
1.98
63711831--63711870
15
2.7
15
88
11
57
57
15
17
10
1.64
63717944--63717972
14
2.0
15
93
6
51
27
0
20
51
1.47
63719097--63719265
43
4.0
43
75
9
166
24
15
27
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63719546--63719575
14
2.1
14
93
0
51
40
0
13
46
1.43
63723170--63723269
34
2.9
34
71
14
89
28
24
26
22
1.99
63724419--63724472
25
2.2
24
86
3
72
33
12
27
25
1.93
63738263--63738426
43
3.8
43
74
15
160
31
26
17
24
1.97
63739968--63739997
14
2.1
15
93
6
53
20
46
0
33
1.51
63755945--63756112
46
3.6
47
91
4
243
28
19
27
23
1.98
63755945--63756258
49
6.6
48
80
10
244
28
19
27
24
1.98
63766183--63766217
9
3.8
9
88
3
52
20
31
34
14
1.92
63776440--63776685
64
3.8
64
82
4
289
23
28
16
30
1.96
63776440--63776715
130
2.1
126
77
9
275
23
28
15
32
1.96
63777215--63777275
30
2.0
30
87
0
86
31
26
3
39
1.72
63779347--63779403
19
3.0
18
77
10
60
38
10
7
43
1.66
63780116--63780147
16
2.0
16
93
0
55
53
0
6
40
1.26
63780574--63780638
30
2.2
30
94
0
112
29
3
16
50
1.60
63786204--63786247
19
2.3
20
80
11
56
43
0
0
56
0.99
63786811--63786835
11
2.3
11
100
0
50
56
0
0
44
0.99
63786876--63786915
21
2.0
20
85
14
55
47
0
0
52
1.00
63786876--63786922
20
2.2
21
82
14
53
46
0
4
48
1.21
63801080--63801198
58
2.1
58
100
0
238
19
6
19
54
1.66
63809626--63809698
35
2.1
36
86
2
103
28
28
12
30
1.93
63814679--63814752
28
2.6
29
91
4
123
28
4
2
64
1.25
63814691--63814737
14
3.4
14
72
21
53
29
4
2
63
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63820624--63820837
26
8.5
26
68
12
131
36
25
14
23
1.93
63820731--63820822
46
2.0
46
83
8
116
35
26
17
20
1.95
63822818--63822943
66
1.9
66
80
3
146
31
33
14
20
1.92
63835889--63836028
58
2.4
58
93
0
235
35
21
17
25
1.95
63838903--63839148
43
5.7
43
81
1
269
22
17
20
39
1.93
63838905--63839148
129
1.9
129
85
1
337
22
17
20
38
1.93
63838893--63839185
129
2.3
126
75
8
293
24
17
19
39
1.92
63845780--63845817
19
2.0
19
85
10
51
13
23
44
18
1.85
63846172--63846266
47
2.0
47
100
0
190
33
14
21
30
1.93
63849295--63849407
6
18.3
6
68
21
56
48
14
16
20
1.80
63849304--63849407
31
3.4
31
86
2
111
49
13
17
20
1.80
63849811--63850100
27
10.2
27
79
10
210
25
20
16
37
1.93
63849813--63849977
80
2.1
81
89
4
255
25
20
16
36
1.94
63849935--63850047
35
3.2
35
91
5
183
20
17
20
41
1.90
63850086--63850346
27
9.7
25
77
12
103
30
9
21
37
1.86
63850108--63850335
81
2.8
81
82
4
192
31
10
21
36
1.87
63850136--63850398
81
3.2
80
84
3
287
31
9
20
38
1.85
63850193--63850398
27
7.6
27
87
0
268
31
9
19
39
1.84
63852796--63852848
26
2.0
26
82
7
63
20
15
22
41
1.89
63854051--63854154
24
4.3
23
83
7
109
20
34
6
38
1.79
63854058--63854154
48
2.0
49
83
2
124
21
34
6
38
1.79
63859915--63859993
37
2.1
37
86
4
106
26
30
17
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63860112--63860742
47
13.4
47
94
1
1048
29
29
8
32
1.87
63870688--63870749
26
2.4
26
97
0
115
19
17
30
32
1.95
63872531--63872764
48
4.9
48
79
4
249
32
29
18
18
1.95
63872531--63872770
95
2.5
96
83
3
297
32
29
18
19
1.96
63878967--63878998
16
2.0
16
93
0
55
34
18
0
46
1.49
63879209--63879591
50
7.6
50
77
4
376
30
25
18
26
1.98
63879259--63879440
101
1.8
101
87
2
276
30
24
18
26
1.98
63879206--63879592
150
2.6
151
91
0
632
29
25
18
26
1.98
63879939--63879985
19
2.3
20
82
10
60
48
17
0
34
1.47
63884440--63884487
25
1.9
25
91
0
78
35
25
14
25
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345