Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  307  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103822018--103822067
22
2.2
23
78
3
57
20
2
8
70
1.23
103826150--103826223
31
2.4
29
86
8
103
37
10
27
24
1.88
103826151--103826211
31
2.0
31
96
0
113
36
11
27
24
1.90
103826863--103826908
14
3.4
14
80
14
51
84
13
0
2
0.71
103826872--103826907
6
5.8
6
87
6
54
83
16
0
0
0.65
103826854--103826920
12
5.5
12
78
7
64
85
8
4
1
0.80
103827369--103827492
65
1.9
65
91
0
203
19
21
10
48
1.79
103828028--103828307
99
2.8
99
82
4
316
31
17
21
29
1.96
103828395--103828482
45
2.0
45
81
2
106
31
23
21
22
1.98
103828130--103828885
143
5.3
143
85
2
989
31
18
21
28
1.97
103828130--103828892
287
2.7
287
90
0
1152
32
19
20
27
1.97
103830479--103830549
25
2.8
25
73
25
60
26
2
2
67
1.18
103830489--103830578
43
2.1
44
87
2
128
30
3
3
63
1.27
103830533--103830781
26
9.5
26
75
7
200
30
5
5
58
1.43
103830582--103830748
54
3.1
53
78
11
137
31
5
4
58
1.43
103830784--103830813
7
4.3
7
91
0
51
30
0
0
70
0.88
103830850--103830913
25
2.5
26
84
2
85
31
6
3
59
1.38
103832764--103832809
23
1.9
24
82
8
58
56
6
4
32
1.45
103836387--103836444
30
2.0
29
86
10
82
32
1
3
62
1.22
103848499--103848626
65
2.0
65
96
0
238
42
7
17
32
1.78
103855476--103855535
26
2.3
27
83
13
72
28
5
1
65
1.23
103859032--103859056
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103860316--103860349
18
1.9
18
88
5
52
41
0
14
44
1.45
103862532--103862567
18
1.9
19
88
5
56
22
8
11
58
1.59
103863371--103863420
24
2.1
24
100
0
100
54
6
16
24
1.64
103870166--103870222
28
2.0
28
93
0
96
35
1
1
61
1.17
103870176--103870219
18
2.4
17
85
11
52
31
2
2
63
1.19
103870218--103870296
27
2.7
30
78
9
74
41
1
1
55
1.16
103870229--103870317
31
3.0
31
79
12
105
37
0
2
60
1.09
103874216--103874244
14
2.0
15
93
6
51
6
17
6
68
1.34
103883591--103883658
16
4.2
16
90
7
102
27
0
33
38
1.57
103883591--103883658
32
2.1
32
94
0
118
27
0
33
38
1.57
103883788--103884097
157
2.0
157
92
0
521
43
3
5
47
1.41
103904556--103904733
64
2.8
64
82
5
193
28
26
20
24
1.99
103907004--103907037
17
1.9
18
94
5
61
58
5
8
26
1.51
103907758--103907795
10
3.8
10
83
13
51
65
2
7
23
1.32
103907799--103907853
12
4.6
12
72
17
51
58
12
0
29
1.35
103932375--103932404
15
2.0
15
93
0
51
40
3
0
56
1.16
103933839--103933890
24
2.2
24
89
6
79
36
3
3
55
1.36
103940068--103940223
69
2.3
69
94
2
269
38
12
22
26
1.89
103942689--103942755
13
4.9
13
70
10
53
37
26
7
28
1.84
103942695--103942733
14
2.9
14
84
3
53
38
25
7
28
1.83
103947657--103947708
25
2.1
25
100
0
104
25
26
11
36
1.90
103954879--103954937
8
7.2
8
74
14
50
57
1
0
40
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103955589--103955623
18
1.9
18
88
0
52
25
5
2
65
1.28
103955668--103955709
15
2.6
16
85
10
59
26
2
0
71
0.98
103955668--103955709
17
2.6
16
88
7
59
26
2
0
71
0.98
103957552--103957619
30
2.3
30
84
5
84
47
5
19
27
1.72
103960043--103960362
46
7.0
46
94
0
525
38
15
23
22
1.92
103964740--103964786
21
2.3
21
85
3
60
57
12
0
29
1.36
103971075--103971105
2
15.5
2
100
0
62
51
0
0
48
1.00
103977075--103977221
43
3.4
43
84
3
190
32
24
15
27
1.95
103981167--103981216
25
2.0
25
96
0
91
34
8
0
58
1.28
103981171--103981231
25
2.5
24
84
7
77
32
11
0
55
1.36
103981020--103981332
173
1.8
173
85
4
443
43
9
3
43
1.54
103981346--103981442
45
2.2
47
76
16
107
38
16
2
43
1.60
103984663--103984710
17
2.8
16
78
12
51
45
18
0
35
1.50
103985606--103985639
17
2.0
17
100
0
68
35
29
11
23
1.90
103991041--103991081
21
2.0
21
81
18
50
21
26
19
31
1.97
103995956--103996058
51
2.0
51
94
0
179
27
15
18
38
1.91
103997573--103998002
140
3.1
140
87
0
628
25
20
22
30
1.98
103997865--103998128
126
2.1
126
84
1
350
26
19
21
32
1.97
103997728--103998246
266
2.0
266
85
0
707
26
20
22
30
1.98
103999492--103999537
22
2.1
22
84
4
58
28
0
17
54
1.43
103999493--103999588
29
3.3
28
71
17
79
22
0
22
54
1.45
103999585--103999652
27
2.5
26
83
9
84
13
0
33
52
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104000485--104000522
3
12.7
3
94
0
67
36
0
34
28
1.58
104000485--104000545
6
10.2
6
90
0
59
42
1
34
21
1.63
104002975--104003407
35
12.0
35
71
11
252
24
18
16
39
1.91
104003028--104003407
37
10.5
35
69
20
126
25
18
16
39
1.91
104002991--104003378
72
5.4
71
77
8
349
25
18
15
40
1.90
104002991--104003407
110
3.8
107
76
12
293
24
19
16
39
1.91
104003201--104003439
110
2.2
111
81
5
279
24
21
15
38
1.92
104002972--104003378
73
5.6
71
77
8
342
24
18
16
40
1.90
104003198--104003436
73
3.2
74
79
9
170
23
21
16
38
1.93
104004861--104004917
30
1.9
30
92
0
96
24
35
24
15
1.95
104006860--104006917
30
1.9
30
85
0
80
17
29
31
22
1.96
104026842--104026891
24
2.1
24
85
7
66
20
10
4
66
1.38
104029284--104029310
14
1.9
14
100
0
54
22
7
11
59
1.56
104031164--104031207
20
2.2
20
92
8
72
31
13
13
40
1.84
104031164--104031230
20
3.3
19
84
12
64
31
13
13
41
1.83
104034928--104034994
34
2.0
34
96
0
125
31
8
23
35
1.86
104036368--104036485
34
3.5
33
79
8
132
44
0
11
43
1.47
104036564--104037042
126
3.9
125
85
3
591
39
15
16
28
1.89
104036564--104037074
244
2.1
246
84
4
654
38
15
16
29
1.89
104040605--104040646
18
2.4
18
77
18
52
47
9
21
21
1.79
104043842--104043866
7
3.6
7
100
0
50
88
0
0
12
0.53
104047905--104047931
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104049051--104049080
3
10.0
3
100
0
60
33
0
0
66
0.92
104051809--104051859
27
1.9
26
84
4
66
21
29
17
31
1.96
104054876--104054913
19
2.0
20
89
5
60
26
0
26
47
1.52
104055009--104055134
65
1.9
65
82
3
155
52
8
11
27
1.66
104059459--104059499
20
2.0
20
95
0
73
19
34
19
26
1.96
104064140--104064307
46
3.6
47
79
8
159
23
29
17
28
1.97
104066664--104066738
37
2.0
37
100
0
150
41
13
24
21
1.88
104068086--104068110
13
1.9
13
100
0
50
8
32
32
28
1.86
104074192--104074227
18
2.0
18
100
0
72
27
22
11
38
1.88
104076092--104076254
43
3.8
42
78
8
152
28
17
24
29
1.97
104076091--104076254
86
1.9
85
80
3
186
28
17
24
29
1.97
104086474--104086998
266
2.0
267
86
2
743
25
22
19
32
1.97
104088373--104088485
43
2.7
42
78
12
115
22
19
29
29
1.98
104093558--104093584
14
1.9
14
100
0
54
66
11
0
22
1.22
104097057--104097127
35
2.0
36
86
2
99
66
16
4
12
1.40
104097588--104097661
26
2.9
25
82
9
87
32
18
9
39
1.83
104107911--104107944
16
2.1
16
88
0
50
55
2
0
41
1.15
104107962--104108009
23
2.0
25
84
11
66
62
6
0
31
1.20
104110849--104110981
54
2.5
54
97
0
248
24
19
27
28
1.98
104118987--104119049
22
2.8
23
76
9
67
61
12
9
15
1.55
104126388--104126453
31
2.1
31
97
0
123
21
22
7
48
1.75
104126661--104126700
20
2.0
20
100
0
80
30
20
15
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104126794--104126854
14
4.5
14
77
8
72
1
26
0
72
0.94
104126797--104126831
17
1.9
17
88
11
52
2
22
0
74
0.95
104127573--104127625
26
2.0
26
100
0
106
18
16
33
30
1.94
104130573--104130667
46
2.0
47
97
2
183
43
14
12
29
1.83
104130858--104130897
14
3.1
14
73
26
52
47
7
7
37
1.60
104132513--104132551
19
2.1
19
95
0
69
38
5
0
56
1.22
104132634--104132668
14
2.4
15
90
9
63
74
14
11
0
1.08
104133572--104133681
38
2.8
40
72
8
91
22
19
27
30
1.98
104141136--104141246
38
2.8
40
74
8
102
22
20
27
29
1.99
104145682--104145738
24
2.4
24
84
0
69
45
10
7
36
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345