genome.fa.s6.2.7.7.80.10.50.1000.268.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  268  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91308437--91308950	47	11.0	47	87	0	715	32	11	28	27	1.91
91308458--91308950	94	5.3	94	92	0	808	32	11	28	26	1.91
91309113--91309258	37	3.9	37	91	0	229	21	19	32	26	1.97
91310357--91310402	22	2.1	22	84	4	58	26	17	13	43	1.85
91311298--91311481	50	3.7	50	82	1	181	26	17	26	29	1.98
91313832--91313959	46	2.8	46	82	1	157	21	13	28	35	1.91
91316757--91316865	37	2.9	37	94	0	182	26	30	20	22	1.98
91317009--91317237	47	4.9	46	80	10	136	25	30	10	33	1.90
91317073--91317457	47	8.1	47	89	3	554	26	30	11	31	1.92
91317073--91317437	147	2.5	146	90	2	578	26	30	12	31	1.92
91317357--91317431	22	3.3	22	64	29	57	25	30	13	30	1.94
91317096--91317457	194	1.9	194	94	0	643	27	29	11	31	1.92
91321336--91321607	40	6.8	40	95	0	463	26	29	21	22	1.99
91322860--91322997	36	3.9	36	90	4	217	26	30	18	24	1.98
91322861--91323001	71	2.0	73	92	2	241	26	30	19	24	1.98
91323206--91323636	47	9.1	47	94	2	666	26	30	12	31	1.92
91330872--91330922	27	1.9	26	84	4	66	17	9	0	72	1.11
91349536--91349562	6	4.5	6	100	0	54	29	0	0	70	0.88
91356818--91356871	24	2.2	24	83	9	65	42	16	14	25	1.87
91356825--91356865	18	2.3	19	80	20	52	39	17	14	29	1.89
91356833--91356872	6	6.3	6	88	5	53	37	15	15	32	1.88
91367345--91367382	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91367612--91367782	93	1.8	93	91	0	279	30	28	19	22	1.98
91367607--91367779	46	3.7	46	77	10	190	31	27	19	22	1.98
91368202--91368261	30	2.0	30	86	0	84	30	25	6	38	1.81
91371726--91371775	25	2.0	25	96	0	91	30	14	28	28	1.95
91376433--91376460	13	2.2	13	100	0	56	17	7	21	53	1.67
91378661--91378753	40	2.3	40	82	10	102	29	22	13	34	1.93
91380275--91380430	54	2.9	54	88	0	213	31	19	7	41	1.78
91380275--91380431	81	1.9	81	82	5	192	31	20	7	41	1.79
91380275--91380432	27	5.9	27	81	3	165	31	20	6	41	1.78
91380262--91380442	81	2.2	81	76	3	186	34	20	6	38	1.79
91380261--91380567	54	5.7	54	79	6	192	36	19	7	36	1.80
91380424--91380637	81	2.6	81	85	1	277	40	20	8	31	1.82
91380410--91380713	54	5.6	54	79	6	238	39	20	8	30	1.83
91380478--91380656	81	2.2	81	85	2	243	40	20	8	30	1.83
91380383--91380716	27	12.3	27	75	8	176	39	19	8	32	1.83
91380774--91380838	27	2.4	27	82	5	78	33	21	24	20	1.97
91381642--91381816	26	6.8	26	87	0	246	26	22	22	27	1.99
91381642--91381816	52	3.4	52	92	1	300	26	22	22	27	1.99
91381961--91382048	42	2.1	42	91	0	140	30	13	19	36	1.90
91384894--91384986	29	3.3	28	83	4	116	25	15	31	27	1.95
91384917--91384981	27	2.3	29	89	5	98	24	15	33	26	1.95
91386173--91386206	18	1.9	18	88	5	52	41	5	17	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91391619--91391684	28	2.3	29	84	2	80	31	21	3	43	1.67
91393214--91393388	46	3.8	46	80	10	212	21	22	29	27	1.99
91393209--91393381	93	1.9	93	95	0	310	21	22	29	26	1.99
91396150--91396524	48	7.8	48	77	1	322	23	28	18	29	1.98
91396151--91396528	96	3.9	96	85	0	488	23	28	18	29	1.98
91396153--91396520	144	2.6	144	80	3	373	23	28	19	29	1.98
91399888--91399980	39	2.4	39	83	3	116	32	19	24	23	1.98
91399973--91400188	39	5.5	39	88	1	315	20	23	27	28	1.99
91399933--91400178	78	3.2	77	82	5	280	22	21	27	28	1.99
91405448--91405854	48	8.5	48	94	0	661	33	8	28	29	1.86
91406027--91406129	37	2.8	37	93	0	179	24	20	32	23	1.98
91413393--91413524	39	3.4	39	92	2	203	30	19	25	25	1.98
91413517--91413732	39	5.5	39	93	1	360	20	24	28	27	1.99
91413400--91413730	78	4.2	78	83	7	318	23	22	26	26	2.00
91413468--91413731	117	2.2	117	85	6	356	23	23	27	26	2.00
91417540--91417587	23	2.0	23	88	4	69	62	6	6	25	1.42
91425071--91425130	27	2.2	27	81	0	75	26	23	18	31	1.97
91425176--91425467	80	3.6	80	80	8	308	29	10	19	40	1.85
91425205--91425441	107	2.2	107	82	4	273	29	9	19	41	1.82
91425159--91425475	27	11.9	27	76	6	211	28	11	20	39	1.87
91426483--91426559	13	5.9	13	84	3	93	29	6	27	36	1.82
91426483--91426559	39	2.0	39	86	0	109	29	6	27	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91427719--91427769	24	2.1	24	82	7	59	15	41	7	35	1.76
91447459--91447689	38	6.1	38	79	6	211	33	30	18	18	1.94
91453868--91454019	45	3.4	44	83	4	189	26	23	17	31	1.97
91455655--91455758	23	4.6	23	83	7	122	38	17	20	24	1.93
91455653--91455766	45	2.5	46	83	7	144	36	17	21	24	1.94
91463689--91463715	14	1.9	14	100	0	54	59	11	7	22	1.56
91465260--91465357	48	2.0	48	100	0	196	44	18	14	22	1.85
91470286--91470389	23	4.5	23	86	7	140	42	22	17	18	1.89
91474777--91474912	47	2.9	47	79	1	146	27	16	22	33	1.95
91477998--91478036	17	2.3	17	95	0	69	48	0	15	35	1.45
91479506--91479772	104	2.6	104	93	1	455	29	30	20	18	1.97
91480096--91480159	30	2.2	29	81	10	76	29	28	6	35	1.82
91480103--91480159	30	1.9	30	85	3	80	29	24	7	38	1.82
91486983--91487249	104	2.6	104	93	1	455	29	30	20	18	1.97
91487576--91487639	30	2.2	29	81	10	76	29	28	6	35	1.82
91487583--91487639	30	1.9	30	85	3	80	29	24	7	38	1.82
91488613--91488727	52	2.3	50	80	7	133	30	15	26	26	1.96
91488633--91488758	52	2.5	51	85	3	155	28	14	28	28	1.95
91488645--91488769	51	2.4	52	86	4	164	28	16	28	26	1.97
91489193--91489272	30	2.7	30	90	0	124	30	18	8	42	1.81
91489253--91489324	29	2.4	30	90	2	119	22	25	11	41	1.86
91489310--91489385	30	2.5	30	81	8	84	28	28	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91495564--91495682	27	4.4	27	88	5	152	26	22	15	36	1.93
91502121--91502174	27	2.0	27	85	3	74	38	16	22	22	1.93
91502176--91502374	27	7.4	27	84	4	213	26	21	17	35	1.95
91502177--91502374	81	2.4	80	86	1	252	26	21	16	35	1.94
91507182--91507322	39	3.6	39	84	3	167	31	4	20	43	1.73
91510512--91510557	19	2.4	19	96	0	83	39	30	15	15	1.88
91513307--91513331	7	3.6	7	100	0	50	0	44	0	56	0.99
91513814--91513900	39	2.2	39	83	0	102	36	22	20	19	1.95
91514465--91514512	15	3.3	15	77	11	55	16	0	33	50	1.46
91514516--91514578	22	2.9	22	81	6	76	17	0	38	44	1.49
91514479--91514601	7	17.3	7	71	6	68	18	0	37	43	1.50
91524132--91524156	11	2.3	11	100	0	50	16	0	0	84	0.63
91528573--91528891	48	6.6	48	90	2	464	26	28	19	24	1.99
91531096--91531120	13	1.9	13	100	0	50	36	16	8	40	1.77
91537969--91538017	22	2.2	23	78	10	57	51	8	12	28	1.68
91544488--91544791	42	7.2	42	64	15	144	27	26	17	29	1.97
91544531--91544834	41	7.2	41	65	17	149	28	26	17	27	1.98
91544483--91544883	84	4.8	84	90	0	604	28	26	17	27	1.98
91546763--91546792	15	2.1	15	93	6	53	36	26	6	30	1.82
91550920--91551320	84	4.8	84	89	1	597	27	25	17	28	1.98
91557362--91557530	46	3.6	46	80	6	196	28	18	27	24	1.98
91557362--91557537	94	1.9	94	89	0	271	28	18	27	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91558890--91558928	21	1.9	21	89	5	62	12	35	28	23	1.91
91561199--91561282	43	1.9	43	85	2	114	34	23	15	26	1.95
91567522--91567557	16	2.2	16	90	9	56	77	2	0	19	0.88
91568248--91568296	18	2.5	21	83	12	68	30	0	0	69	0.89
91568263--91568302	21	2.0	21	85	5	55	37	0	0	62	0.95
91568733--91568789	29	2.0	29	82	0	69	31	10	12	45	1.76
91569076--91569178	9	10.8	9	66	15	55	62	2	1	33	1.21
91569113--91569155	18	2.3	18	92	4	68	53	4	2	39	1.34
91570814--91570843	8	3.6	8	95	4	51	63	0	0	36	0.95
91571073--91571112	19	2.2	18	86	8	55	2	17	0	80	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345