Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  276  of  345  ( 41358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93992938--93992986
22
2.3
22
85
3
64
20
34
30
14
1.92
93995662--93995701
19
2.0
20
85
4
55
25
22
12
40
1.89
94009042--94009105
24
2.6
25
87
4
87
32
31
15
20
1.94
94009129--94009178
24
2.1
24
88
0
73
32
30
12
26
1.92
94009134--94009510
189
2.0
188
95
0
682
39
19
10
30
1.85
94009134--94009510
94
4.0
94
97
0
682
39
19
10
30
1.85
94014712--94014807
29
3.3
30
78
8
92
22
35
15
26
1.94
94019094--94019308
40
5.4
40
86
5
294
26
29
20
24
1.99
94019094--94019301
79
2.6
80
88
5
307
25
28
21
24
1.99
94021301--94021338
18
2.1
19
90
5
60
18
36
15
28
1.92
94021451--94021495
8
5.6
8
81
0
54
6
26
17
48
1.72
94031682--94031762
29
2.8
29
85
7
119
29
25
16
28
1.96
94033754--94034011
40
6.5
40
91
2
378
22
24
28
24
2.00
94040571--94040604
11
3.2
11
91
4
52
29
0
0
70
0.87
94041105--94041142
18
2.1
18
85
9
51
57
2
0
39
1.12
94041092--94041146
28
1.9
29
85
10
78
58
3
0
38
1.16
94041391--94041442
25
2.1
25
82
3
61
30
21
9
38
1.85
94049549--94049600
22
2.3
23
81
15
56
51
0
0
48
1.00
94049693--94049725
16
1.9
18
88
11
52
36
3
0
60
1.12
94051059--94051118
30
2.0
30
83
6
77
56
10
1
31
1.42
94051724--94051754
11
2.8
11
90
0
53
32
0
0
67
0.91
94051877--94051938
30
2.1
30
90
6
99
59
11
3
25
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94058274--94058456
40
4.6
41
80
11
213
24
22
27
25
2.00
94058327--94058489
79
2.1
77
83
4
202
26
20
26
25
1.99
94061836--94061977
52
2.9
48
83
16
184
30
9
30
28
1.88
94061838--94061980
46
2.9
47
85
14
184
30
9
30
29
1.88
94063415--94063624
79
2.8
77
89
5
313
26
21
26
25
1.99
94063415--94063624
39
5.5
40
88
7
294
26
21
26
25
1.99
94063575--94063666
33
2.7
32
72
12
76
25
25
26
23
2.00
94163239--94163362
28
4.5
28
92
4
191
25
12
29
32
1.93
94171376--94171443
27
2.5
28
92
2
111
25
14
29
30
1.95
94171376--94171456
27
3.0
27
85
5
92
28
13
25
32
1.94
94180330--94180479
67
2.2
67
81
8
171
32
17
28
21
1.96
94180354--94180537
67
2.8
64
77
8
194
29
17
29
22
1.97
94190768--94190868
42
2.4
42
86
0
130
21
21
27
28
1.99
94197424--94197584
84
1.9
84
85
2
225
31
13
19
36
1.90
94198943--94199031
25
3.6
25
80
3
99
28
25
16
29
1.97
94209493--94209539
23
2.1
22
88
4
67
57
25
2
14
1.49
94217637--94217760
49
2.6
49
83
2
153
12
25
14
47
1.79
94217628--94217785
48
3.3
48
79
6
169
11
27
12
48
1.74
94225292--94225413
49
2.5
49
82
0
163
13
27
9
50
1.70
94225292--94225449
49
3.3
48
78
6
160
12
27
10
50
1.72
94237500--94237547
15
3.1
16
77
16
57
12
12
16
58
1.63
94237503--94237574
30
2.4
29
82
8
83
13
15
15
55
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94241786--94241900
29
4.0
28
85
2
131
26
13
29
29
1.95
94241799--94241909
57
1.9
58
87
1
161
26
13
30
29
1.94
94245884--94245933
25
2.0
25
96
0
91
28
22
16
34
1.95
94249867--94249913
19
2.3
20
82
10
60
36
0
14
48
1.44
94250412--94250804
101
3.9
101
91
0
633
27
19
24
29
1.98
94250262--94250806
151
3.6
151
80
3
612
26
19
24
28
1.99
94251007--94251038
16
2.0
16
93
0
55
46
0
18
34
1.49
94252237--94252261
13
1.9
13
100
0
50
32
4
16
48
1.64
94253964--94254002
15
2.6
15
92
8
62
15
17
15
51
1.77
94256959--94257302
50
6.9
50
76
3
244
28
16
24
30
1.97
94257067--94257302
99
2.4
100
81
2
260
27
16
25
30
1.96
94256960--94257299
149
2.3
151
89
1
504
27
17
24
30
1.97
94257502--94257533
16
2.0
16
93
0
55
46
0
18
34
1.49
94259513--94259619
42
2.5
42
80
3
117
28
24
16
29
1.97
94264999--94265023
11
2.3
11
100
0
50
16
8
20
56
1.65
94266953--94267044
44
2.1
44
85
0
121
32
25
22
19
1.97
94275894--94275925
16
2.0
16
93
0
55
25
15
6
53
1.65
94276559--94276767
41
5.1
40
83
8
217
36
20
22
20
1.95
94276566--94276767
81
2.5
82
82
5
223
35
21
22
20
1.96
94276944--94277019
36
2.0
39
85
7
104
30
5
23
40
1.77
94277575--94277604
15
2.0
15
93
0
51
56
0
10
33
1.32
94277578--94277641
20
2.8
24
70
20
64
54
0
6
39
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94284570--94284609
21
1.9
21
94
0
71
30
10
12
47
1.74
94291026--94291143
44
2.7
43
90
2
200
30
19
22
27
1.98
94291034--94291184
44
3.5
43
85
4
126
31
19
19
29
1.97
94296835--94296908
26
2.8
26
83
0
85
21
22
18
36
1.95
94299963--94300004
20
2.0
21
86
13
61
57
0
33
9
1.31
94305935--94306449
47
11.0
47
88
0
742
32
11
29
27
1.91
94306150--94306225
23
3.2
25
62
24
63
28
13
34
23
1.92
94305956--94306449
94
5.3
94
94
0
835
32
11
29
26
1.91
94306612--94306763
37
4.1
37
93
0
241
21
21
32
25
1.97
94308012--94308350
40
8.5
40
89
0
489
24
21
27
26
1.99
94312465--94312979
47
11.0
47
88
0
744
32
11
29
27
1.91
94312680--94312755
23
3.2
25
62
24
63
28
13
34
23
1.92
94312486--94312979
94
5.3
94
93
0
828
32
11
28
26
1.92
94313142--94313293
37
4.1
37
93
0
241
21
21
32
25
1.97
94317612--94317646
15
2.3
15
90
0
52
71
0
8
20
1.11
94328978--94329048
6
11.7
6
89
7
72
16
0
8
74
1.05
94328982--94329039
12
4.8
12
91
2
80
15
0
10
74
1.08
94328978--94329039
18
3.4
18
88
4
90
16
0
9
74
1.07
94337028--94337252
40
5.6
40
80
4
229
25
22
26
25
2.00
94337028--94337288
80
3.3
80
79
4
251
26
22
25
25
2.00
94340441--94340480
21
2.0
20
85
5
53
45
20
0
35
1.51
94344708--94344797
40
2.2
40
86
3
119
24
25
25
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94346098--94346131
18
1.9
18
94
5
61
58
5
8
26
1.51
94346856--94346915
10
6.0
10
83
11
61
66
1
6
25
1.25
94347573--94347763
96
2.0
97
81
1
222
32
23
14
30
1.94
94348807--94348859
20
2.7
19
85
5
70
77
0
3
18
0.92
94351351--94351390
8
4.9
8
87
3
53
37
0
25
37
1.56
94360910--94360963
25
2.2
25
100
0
108
42
11
25
20
1.85
94362650--94362746
47
2.1
47
98
0
185
35
2
25
37
1.68
94366973--94367032
10
6.0
10
84
11
79
20
8
3
68
1.30
94371913--94372131
40
5.5
40
84
4
275
25
20
27
26
1.99
94371915--94372121
79
2.6
80
85
5
278
24
20
28
26
1.99
94374071--94374258
40
4.7
40
93
3
326
24
27
22
25
2.00
94374038--94374258
80
2.8
80
90
4
333
23
27
22
26
2.00
94381959--94382221
40
6.6
40
87
3
316
24
20
28
26
1.99
94381998--94382256
80
3.3
80
84
3
238
25
20
28
25
1.99
94389915--94390177
40
6.6
40
87
3
316
24
20
28
26
1.99
94389954--94390212
80
3.3
80
84
3
238
25
20
28
25
1.99
94393230--94393430
39
5.2
39
86
9
259
25
26
21
25
2.00
94393253--94393437
78
2.4
79
89
6
288
25
27
22
25
2.00
94396864--94396908
20
2.2
20
88
0
63
35
13
2
48
1.54
94398563--94398601
16
2.4
16
87
12
53
76
10
0
12
1.01
94398570--94398606
18
2.1
18
90
10
58
78
10
0
10
0.97
94402739--94403576
47
17.6
47
92
2
1334
33
8
28
29
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94402739--94403576
96
8.8
94
92
1
1334
33
8
28
29
1.87
94402739--94403576
143
5.9
141
93
1
1316
33
8
28
29
1.87
94403695--94403832
37
3.7
37
97
0
249
24
18
31
25
1.98
94405401--94405439
19
2.0
20
90
5
62
33
0
17
48
1.48
94413681--94413719
19
2.0
20
85
5
53
35
2
20
41
1.66
94420865--94421084
49
4.6
48
74
11
175
23
27
21
28
1.99
94420816--94421040
93
2.4
91
81
5
234
24
28
19
28
1.99
94421001--94421179
46
3.8
46
88
2
252
21
29
20
28
1.98
94420963--94421189
46
4.9
46
81
4
199
23
29
19
27
1.98
94420915--94421189
92
3.0
93
80
7
285
22
29
20
28
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345