genome.fa.s6.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Length:  115140250

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  94  of  345  ( 41358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30917833--30917915	22	3.8	21	77	16	80	28	6	7	57	1.49
30917921--30917988	25	2.7	26	79	2	75	33	10	5	50	1.61
30918184--30918226	3	14.3	3	100	0	86	32	0	0	67	0.91
30918184--30918250	15	3.9	18	90	9	74	34	0	2	62	1.10
30918220--30918244	12	2.1	12	100	0	50	32	0	8	60	1.26
30918244--30918318	25	2.9	26	74	7	64	36	9	5	49	1.58
30926928--30927103	92	1.9	91	84	4	237	27	17	19	35	1.94
30926875--30927423	163	3.4	161	77	9	557	28	17	21	33	1.95
30927272--30927470	88	2.3	88	84	6	244	31	17	18	33	1.94
30927482--30927517	13	2.8	13	91	0	54	25	11	2	61	1.43
30927961--30928008	25	1.9	25	95	0	87	31	29	8	31	1.87
30928064--30928123	25	2.4	25	97	0	111	50	38	6	5	1.51
30928487--30928526	10	4.0	10	90	0	62	0	10	10	80	0.92
30929318--30929375	16	3.6	16	88	6	73	32	5	5	56	1.43
30929282--30929359	30	2.6	29	75	16	79	29	8	3	57	1.47
30929375--30929423	18	2.5	20	71	21	50	36	0	10	53	1.35
30929591--30929654	22	3.0	21	74	19	60	34	3	6	56	1.40
30929632--30929710	24	3.5	24	75	14	78	27	6	3	62	1.37
30929700--30929753	23	2.3	24	83	3	65	35	7	5	51	1.53
30929953--30929985	3	11.0	3	100	0	66	33	0	0	66	0.92
30930186--30930246	13	4.5	13	88	8	95	36	0	6	57	1.25
30930182--30930249	28	2.4	28	95	0	118	33	0	5	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30932225--30932249	12	2.1	12	100	0	50	16	44	0	40	1.47
30941836--30942047	46	4.6	47	80	12	217	24	29	18	27	1.98
30951704--30951746	21	1.9	24	86	13	65	41	4	0	53	1.21
30952299--30952344	24	2.0	23	91	4	74	23	8	0	67	1.18
30952498--30952531	16	2.1	16	89	10	52	41	0	0	58	0.98
30952667--30952707	13	3.2	13	89	0	64	34	0	2	63	1.08
30954364--30954427	31	2.1	31	100	0	128	53	12	6	28	1.62
30956964--30957109	57	2.5	57	79	6	145	29	22	16	31	1.96
30964543--30964591	18	2.6	19	77	6	55	48	18	14	18	1.80
30964566--30964676	45	2.5	45	89	0	168	45	16	15	23	1.85
30964888--30964974	40	2.2	40	85	0	111	39	19	9	32	1.83
30965634--30965668	11	3.0	11	88	12	52	0	22	0	77	0.78
30965707--30965742	17	2.1	18	89	5	56	5	8	2	83	0.89
30966018--30966076	24	2.4	23	81	13	57	49	5	0	45	1.24
30966026--30966105	35	2.3	35	81	8	85	47	6	1	45	1.36
30967544--30967641	43	2.3	43	83	0	115	23	29	27	19	1.98
30973314--30973346	9	3.8	9	92	8	59	45	0	12	42	1.41
30973314--30973346	17	1.9	17	100	0	66	45	0	12	42	1.41
30973217--30973457	128	1.9	128	97	0	455	34	14	13	37	1.85
30982696--30982720	13	1.9	13	100	0	50	16	20	40	24	1.91
30984459--30984532	36	2.1	36	100	0	148	32	8	13	45	1.73
30987156--30987194	19	2.1	19	90	0	60	28	0	5	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30987206--30987270	20	3.4	19	82	6	78	40	0	3	56	1.15
30992316--30992352	19	1.9	19	88	0	56	70	0	0	29	0.88
30996745--30996883	60	2.3	61	79	8	151	25	25	19	28	1.99
31001732--31001781	21	2.4	21	87	9	68	44	8	2	46	1.44
31002365--31002403	19	2.0	21	85	14	57	30	2	0	66	1.05
31004335--31004443	45	2.4	44	86	6	121	44	6	6	42	1.55
31004357--31004449	45	2.1	45	97	0	177	41	6	8	43	1.61
31011301--31011360	31	1.9	31	89	0	93	25	20	18	36	1.94
31011581--31011651	23	3.0	23	93	2	115	30	19	21	28	1.97
31011703--31011741	20	2.0	20	94	0	69	30	20	10	38	1.86
31011785--31011832	25	1.9	25	82	0	60	27	16	22	33	1.96
31015494--31015640	43	3.5	42	77	5	125	30	25	17	26	1.97
31033242--31033451	40	5.3	40	92	0	314	24	20	28	26	1.99
31033189--31033451	80	3.3	80	84	2	316	24	20	28	26	1.99
31033242--31033486	80	3.1	80	85	2	253	25	20	28	25	1.99
31041150--31041359	40	5.3	40	92	0	314	24	20	28	26	1.99
31041097--31041359	80	3.3	80	85	3	273	24	20	28	26	1.99
31041150--31041394	80	3.1	80	85	2	253	25	20	28	25	1.99
31043562--31043734	49	3.6	49	82	2	170	24	25	20	28	1.99
31043562--31043739	98	1.8	97	82	3	232	24	25	20	29	1.99
31045770--31045938	40	4.3	40	88	2	207	24	21	28	25	1.99
31045717--31045940	80	2.8	79	82	4	245	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31045792--31045973	78	2.3	80	81	2	217	25	21	28	24	1.99
31054461--31054572	49	2.3	49	81	3	118	24	27	20	27	1.99
31054564--31054683	46	2.6	46	85	2	150	24	29	19	27	1.98
31076662--31076746	42	2.0	42	84	4	109	30	22	17	29	1.97
31108454--31108482	13	2.2	13	100	0	58	58	13	0	27	1.36
31120131--31120237	29	3.7	29	74	6	110	29	14	29	25	1.95
31120123--31120235	58	2.0	57	84	5	147	31	14	28	25	1.94
31126349--31126380	16	2.0	16	100	0	64	50	25	6	18	1.70
31127881--31127986	29	3.7	28	76	6	106	29	16	28	26	1.96
31131226--31131276	15	3.4	16	79	12	56	39	1	0	58	1.09
31131225--31131273	19	2.6	19	84	9	57	38	2	0	59	1.09
31131225--31131388	17	9.1	17	65	20	59	35	4	1	58	1.25
31131419--31131474	16	3.5	16	80	4	51	32	3	1	62	1.23
31131613--31131685	22	3.4	22	78	17	73	39	5	0	54	1.23
31138675--31138758	29	2.9	28	72	11	80	30	15	28	25	1.96
31140286--31140351	33	2.0	33	90	0	105	45	13	18	22	1.84
31140578--31140627	21	2.4	21	93	0	82	32	22	16	30	1.95
31147591--31147627	18	2.1	18	100	0	74	16	24	5	54	1.63
31165684--31165741	30	1.9	30	92	0	98	36	12	22	29	1.90
31166083--31166345	46	5.6	45	79	9	171	28	19	29	22	1.98
31166122--31166345	46	4.8	48	80	7	210	28	19	30	22	1.98
31166083--31166345	140	1.9	141	83	4	343	28	19	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31172573--31172638	32	2.1	32	97	0	123	46	18	0	34	1.49
31179555--31179649	32	3.0	32	88	0	136	29	26	9	34	1.88
31180961--31181008	20	2.6	18	78	15	53	62	10	0	27	1.27
31188782--31188945	43	3.8	43	75	7	127	28	29	19	22	1.98
31188782--31188948	44	3.9	42	74	9	140	28	28	19	23	1.98
31196255--31196295	21	1.9	22	85	14	59	36	2	24	36	1.69
31196695--31196722	9	3.1	9	100	0	56	42	0	0	57	0.99
31206026--31206108	40	2.1	40	100	0	166	42	14	9	33	1.78
31213803--31213827	13	1.9	13	100	0	50	32	4	24	40	1.73
31214910--31215070	43	3.7	43	77	14	161	26	16	23	33	1.96
31221504--31221684	48	3.7	47	78	6	166	26	24	17	30	1.97
31221495--31221684	96	2.0	98	87	2	276	26	24	18	30	1.98
31223173--31223234	29	2.1	29	90	0	97	19	29	11	40	1.86
31226601--31226739	43	3.3	41	75	10	120	25	17	25	30	1.97
31234241--31234280	21	2.0	21	90	5	64	10	40	27	22	1.86
31241881--31242087	46	4.5	45	74	14	147	28	18	29	23	1.98
31242054--31242285	48	4.8	49	80	6	222	26	18	28	25	1.98
31244640--31244822	48	3.8	47	82	1	168	27	27	16	27	1.97
31244598--31244827	96	2.4	96	82	5	259	27	26	16	29	1.97
31246371--31246413	22	2.0	22	100	0	86	32	4	32	30	1.78
31246572--31246606	15	2.2	17	90	10	56	17	11	0	71	1.14
31251016--31251054	19	2.1	19	95	0	69	20	5	2	71	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31252475--31252505	7	4.4	7	100	0	62	16	54	0	29	1.42
31263398--31263435	7	5.4	7	93	0	67	15	52	0	31	1.43
31266110--31266260	18	7.9	18	67	13	79	37	15	11	34	1.85
31266435--31266629	45	4.3	45	90	0	273	41	18	19	20	1.91
31267038--31267079	5	8.2	5	84	5	57	38	23	0	38	1.55
31268447--31268481	9	4.0	9	88	7	54	17	11	0	71	1.14
31268447--31268493	17	2.7	18	86	6	69	17	10	0	72	1.12
31268447--31268489	13	3.3	13	83	9	52	16	11	0	72	1.13
31271265--31271434	46	3.7	45	78	9	182	22	30	19	27	1.98
31278827--31279191	46	7.7	48	74	11	220	24	29	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345